Wall clock time and date at job start Mon Mar 30 2020 06:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47101 * 2 1 4 4 C 1.50699 * 109.47477 * 119.99521 * 2 1 3 5 5 H 1.08004 * 119.99958 * 114.34575 * 4 2 1 6 6 C 1.37874 * 120.00014 * 294.35173 * 4 2 1 7 7 N 1.31515 * 119.99630 * 156.64861 * 6 4 2 8 8 Si 1.86793 * 120.00158 * 336.92332 * 6 4 2 9 9 H 1.48503 * 109.47431 * 179.72586 * 8 6 4 10 10 H 1.48498 * 109.47122 * 299.72242 * 8 6 4 11 11 H 1.48506 * 109.47193 * 59.72477 * 8 6 4 12 12 N 1.46500 * 109.47039 * 240.00184 * 2 1 3 13 13 N 1.40105 * 120.00258 * 90.00074 * 12 2 1 14 14 C 1.29751 * 119.99578 * 184.91370 * 13 12 2 15 15 C 1.51853 * 121.76820 * 3.83602 * 14 13 12 16 16 C 1.53181 * 107.33086 * 219.90060 * 15 14 13 17 17 O 1.42722 * 109.50339 * 301.51972 * 16 15 14 18 18 C 1.35590 * 118.77635 * 52.63509 * 17 16 15 19 19 C 1.38650 * 119.96577 * 157.83408 * 18 17 16 20 20 C 1.38217 * 120.08373 * 179.45201 * 19 18 17 21 21 C 1.38425 * 120.62173 * 0.03016 * 20 19 18 22 22 C 1.38082 * 120.11823 * 0.08923 * 21 20 19 23 23 C 1.39240 * 119.61872 * 359.96883 * 22 21 20 24 24 H 1.08999 * 109.47350 * 293.04505 * 1 2 3 25 25 H 1.09002 * 109.47260 * 53.04587 * 1 2 3 26 26 H 1.09008 * 109.46704 * 173.04806 * 1 2 3 27 27 H 0.96992 * 120.00560 * 355.20303 * 7 6 4 28 28 H 0.97004 * 119.99477 * 269.99167 * 12 2 1 29 29 H 1.09001 * 109.91948 * 339.40901 * 15 14 13 30 30 H 1.08999 * 109.92794 * 100.59225 * 15 14 13 31 31 H 1.08999 * 109.53781 * 181.43769 * 16 15 14 32 32 H 1.09002 * 109.32245 * 61.46976 * 16 15 14 33 33 H 1.07994 * 119.96439 * 359.46824 * 19 18 17 34 34 H 1.07995 * 119.68689 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.94039 * 180.11738 * 21 20 19 36 36 H 1.08006 * 120.19693 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5760 -1.6386 1.1341 6 6 1.7981 -0.1752 2.4793 7 7 1.8037 -0.9532 3.5397 8 14 1.4650 1.6535 2.6644 9 1 1.2395 1.9731 4.0970 10 1 2.6324 2.4225 2.1636 11 1 0.2581 2.0187 1.8799 12 7 2.0183 -0.6906 -1.1962 13 7 2.2518 0.0300 -2.3749 14 6 2.5924 -0.5944 -3.4601 15 6 2.6662 -2.1099 -3.5210 16 6 3.9006 -2.4736 -4.3518 17 8 3.7867 -1.8964 -5.6522 18 6 3.5342 -0.5684 -5.7570 19 6 3.8630 0.1093 -6.9211 20 6 3.5964 1.4607 -7.0349 21 6 3.0014 2.1521 -5.9937 22 6 2.6691 1.4946 -4.8258 23 6 2.9354 0.1335 -4.7027 24 1 -0.3634 0.4023 0.9456 25 1 -0.3634 0.6178 -0.8212 26 1 -0.3633 -1.0202 -0.1244 27 1 1.9033 -1.9125 3.4368 28 1 2.1801 -1.6467 -1.1721 29 1 2.7627 -2.5177 -2.5147 30 1 1.7706 -2.5065 -3.9991 31 1 3.9741 -3.5575 -4.4403 32 1 4.7933 -2.0876 -3.8596 33 1 4.3278 -0.4194 -7.7401 34 1 3.8548 1.9821 -7.9446 35 1 2.7963 3.2076 -6.0951 36 1 2.2052 2.0329 -4.0124 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:35 Heat of formation + Delta-G solvation = 6.721187 kcal Electronic energy + Delta-G solvation = -18864.278648 eV Core-core repulsion = 15927.519518 eV Total energy + Delta-G solvation = -2936.759129 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.52012 -38.49387 -38.35214 -36.29559 -34.13119 -32.28587 -31.74430 -31.00875 -28.77105 -26.83593 -25.28915 -24.29141 -22.92186 -22.06552 -20.48788 -19.65866 -18.76161 -18.15162 -17.28994 -16.67604 -16.42082 -15.80859 -15.42190 -15.17155 -14.90489 -14.77727 -14.66350 -14.38238 -14.26899 -13.77182 -13.63682 -13.28647 -12.74172 -12.60429 -12.46303 -12.37287 -11.99993 -11.94141 -11.74975 -11.60104 -11.22935 -10.89836 -10.48551 -10.09244 -9.29970 -8.89958 -8.42191 -6.46281 0.00628 0.48194 1.45847 1.50521 1.52635 1.70881 2.01693 2.27931 2.42986 2.92542 2.94508 3.42480 3.72711 3.79752 3.87822 4.06824 4.24558 4.39752 4.42225 4.48699 4.54718 4.61911 4.71215 4.75495 4.76557 4.88668 4.96154 5.12201 5.23749 5.41536 5.46818 5.57383 5.63104 5.85741 5.90689 5.93703 6.17227 6.42861 6.62482 7.27675 7.56968 8.51846 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.029433 B = 0.004833 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.087643 B = 5791.565802 C = 6444.689932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.283 3.717 3 H 0.026 0.974 4 C -0.624 4.624 5 H 0.028 0.972 6 C 0.001 3.999 7 N -0.919 5.919 8 Si 1.073 2.927 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.246 1.246 12 N -0.637 5.637 13 N -0.229 5.229 14 C 0.044 3.956 15 C -0.141 4.141 16 C 0.077 3.923 17 O -0.320 6.320 18 C 0.124 3.876 19 C -0.153 4.153 20 C -0.075 4.075 21 C -0.152 4.152 22 C -0.078 4.078 23 C -0.116 4.116 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.258 0.742 28 H 0.373 0.627 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.144 0.856 32 H 0.059 0.941 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.150 0.850 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 2.615 -21.818 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.178 3.822 3 H 0.044 0.956 4 C -0.663 4.663 5 H 0.046 0.954 6 C -0.200 4.200 7 N -0.553 5.553 8 Si 0.894 3.106 9 H -0.207 1.207 10 H -0.196 1.196 11 H -0.170 1.170 12 N -0.374 5.374 13 N -0.039 5.039 14 C -0.146 4.146 15 C -0.181 4.181 16 C 0.002 3.998 17 O -0.234 6.234 18 C 0.076 3.924 19 C -0.171 4.171 20 C -0.094 4.094 21 C -0.170 4.170 22 C -0.099 4.099 23 C -0.119 4.119 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.212 0.788 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.162 0.838 32 H 0.078 0.922 33 H 0.171 0.829 34 H 0.183 0.817 35 H 0.168 0.832 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.391 4.624 -20.207 20.867 hybrid contribution 0.385 -2.927 -0.227 2.961 sum 2.775 1.697 -20.433 20.691 Atomic orbital electron populations 1.22425 0.98229 1.00171 1.00133 1.18494 0.90416 0.92810 0.80475 0.95625 1.22164 1.41205 1.10181 0.92726 0.95350 1.26942 0.92382 1.09339 0.91357 1.70971 1.45643 1.05940 1.32745 0.83683 0.79017 0.71046 0.76843 1.20690 1.19573 1.17042 1.48340 1.74988 1.08047 1.06060 1.74049 1.08640 1.27482 0.93682 1.23118 1.05565 0.93864 0.92094 1.21736 1.01470 0.92738 1.02119 1.22917 0.95869 1.00383 0.80672 1.85733 1.86702 1.19813 1.31182 1.19200 0.95497 0.82977 0.94683 1.20839 1.04455 0.94847 0.96964 1.21434 0.95613 0.92802 0.99521 1.21379 1.01250 1.01447 0.92915 1.21221 0.97684 0.92459 0.98513 1.18515 1.05867 0.94978 0.92527 0.92701 0.93852 0.94116 0.93292 0.78847 0.90069 0.88478 0.83832 0.92247 0.82880 0.81700 0.83228 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.69 9.24 71.98 0.66 -6.03 16 2 C 0.28 13.81 2.83 44.24 0.13 13.94 16 3 H 0.03 1.30 6.72 -2.38 -0.02 1.28 16 4 C -0.62 -35.05 8.96 25.60 0.23 -34.82 16 5 H 0.03 1.73 8.01 -2.91 -0.02 1.70 16 6 C 0.00 0.08 5.19 84.65 0.44 0.52 16 7 N -0.92 -55.82 13.70 21.45 0.29 -55.53 16 8 Si 1.07 49.17 26.44 68.60 1.81 50.99 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.25 -10.13 6.15 99.48 0.61 -9.51 16 12 N -0.64 -28.15 6.01 -172.52 -1.04 -29.19 16 13 N -0.23 -9.33 10.92 -41.54 -0.45 -9.79 16 14 C 0.04 1.50 6.82 45.84 0.31 1.82 16 15 C -0.14 -3.93 6.05 30.28 0.18 -3.75 16 16 C 0.08 1.75 6.96 72.04 0.50 2.25 16 17 O -0.32 -8.08 10.23 -88.99 -0.91 -8.99 16 18 C 0.12 3.28 6.55 22.82 0.15 3.43 16 19 C -0.15 -3.09 9.98 22.36 0.22 -2.87 16 20 C -0.08 -1.28 10.02 22.31 0.22 -1.05 16 21 C -0.15 -3.10 10.04 22.28 0.22 -2.88 16 22 C -0.08 -2.20 9.63 22.47 0.22 -1.98 16 23 C -0.12 -3.54 5.84 -19.99 -0.12 -3.66 16 24 H 0.05 2.45 5.47 -2.39 -0.01 2.43 16 25 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.26 15.80 8.73 -92.71 -0.81 14.99 16 28 H 0.37 15.81 6.31 -213.31 -1.35 14.46 16 29 H 0.08 2.36 6.00 -2.39 -0.01 2.34 16 30 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.12 3.58 7.74 -2.91 -0.02 3.56 16 Total: -1.00 -66.63 299.62 2.70 -63.93 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.39 Total: 23.65 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 3.38 Total: -35.08 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -1.20 Total: -94.50 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.91 Total: -8.99 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 1.81 Total: 50.99 kcal Total: -66.63 2.70 -63.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.655 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds