Wall clock time and date at job start Mon Mar 30 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46987 * 2 1 4 4 C 1.50700 * 109.47120 * 240.00355 * 2 1 3 5 5 H 1.08006 * 119.99907 * 240.00212 * 4 2 1 6 6 C 1.37879 * 120.00403 * 59.99237 * 4 2 1 7 7 N 1.31512 * 119.99626 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00157 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46666 * 90.00391 * 8 6 4 10 10 H 1.48498 * 109.47103 * 210.00235 * 8 6 4 11 11 H 1.48505 * 109.46828 * 330.00524 * 8 6 4 12 12 N 1.46495 * 109.47613 * 120.00014 * 2 1 3 13 13 N 1.40103 * 119.99964 * 270.00607 * 12 2 1 14 14 C 1.29753 * 120.00064 * 174.61587 * 13 12 2 15 15 C 1.51858 * 121.76082 * 4.18397 * 14 13 12 16 16 C 1.53182 * 107.32981 * 219.90019 * 15 14 13 17 17 O 1.42716 * 109.50562 * 301.52487 * 16 15 14 18 18 C 1.35593 * 118.78044 * 52.63382 * 17 16 15 19 19 C 1.38645 * 119.96982 * 157.83177 * 18 17 16 20 20 C 1.38216 * 120.08480 * 179.49389 * 19 18 17 21 21 C 1.38427 * 120.62298 * 359.97438 * 20 19 18 22 22 C 1.38091 * 120.11557 * 0.07827 * 21 20 19 23 23 C 1.39238 * 119.61629 * 0.02562 * 22 21 20 24 24 H 1.08993 * 109.47017 * 299.99768 * 1 2 3 25 25 H 1.08997 * 109.47584 * 60.00346 * 1 2 3 26 26 H 1.09003 * 109.46491 * 179.97438 * 1 2 3 27 27 H 0.96998 * 119.99818 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00245 * 89.99680 * 12 2 1 29 29 H 1.08995 * 109.92352 * 339.41255 * 15 14 13 30 30 H 1.09007 * 109.92262 * 100.59980 * 15 14 13 31 31 H 1.09000 * 109.53849 * 181.44275 * 16 15 14 32 32 H 1.09001 * 109.31889 * 61.47266 * 16 15 14 33 33 H 1.07997 * 119.96494 * 359.47426 * 19 18 17 34 34 H 1.07993 * 119.68910 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.94079 * 180.11238 * 21 20 19 36 36 H 1.07999 * 120.19343 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1203 -4.0081 9 1 1.3427 -2.1617 -4.4119 10 1 2.4864 -0.1414 -5.1124 11 1 3.6293 -1.7583 -3.7122 12 7 2.0184 -0.6906 1.1961 13 7 2.2519 0.0300 2.3747 14 6 2.5837 -0.5951 3.4623 15 6 2.8214 -2.0948 3.4815 16 6 2.2150 -2.6363 4.7798 17 8 2.8242 -1.9893 5.8965 18 6 2.8526 -0.6340 5.9300 19 6 2.9975 0.0259 7.1407 20 6 3.0373 1.4070 7.1765 21 6 2.9341 2.1459 6.0105 22 6 2.7882 1.5061 4.7955 23 6 2.7451 0.1151 4.7510 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 0.7093 1.1617 -3.4844 28 1 2.1801 -1.6467 1.1721 29 1 2.3358 -2.5589 2.6232 30 1 3.8914 -2.3016 3.4608 31 1 2.3885 -3.7106 4.8429 32 1 1.1428 -2.4401 4.7863 33 1 3.0790 -0.5398 8.0570 34 1 3.1507 1.9145 8.1230 35 1 2.9684 3.2246 6.0511 36 1 2.7072 2.0814 3.8850 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886961.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:37 Heat of formation + Delta-G solvation = 25.436260 kcal Electronic energy + Delta-G solvation = -18806.907144 eV Core-core repulsion = 15870.959561 eV Total energy + Delta-G solvation = -2935.947583 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.37152 -37.33695 -36.81576 -34.45893 -32.21380 -30.78677 -30.34250 -29.69568 -26.90115 -25.26755 -24.14960 -23.08065 -21.74290 -20.47868 -18.91393 -17.74971 -17.25084 -16.31457 -15.98244 -15.24384 -15.02800 -14.68560 -14.05451 -13.93119 -13.57019 -13.45560 -13.07742 -12.66916 -12.61763 -12.13043 -11.61580 -11.56504 -11.35270 -11.09858 -10.94342 -10.84836 -10.55006 -10.52172 -10.28980 -10.22988 -9.45696 -9.10222 -8.86000 -8.54876 -8.16418 -6.81904 -6.18796 -4.27592 1.19860 1.55550 2.87664 3.20586 3.27269 3.29401 3.32333 3.68285 4.06799 4.31752 4.69198 4.89759 5.00315 5.03276 5.13856 5.17691 5.20471 5.42375 5.48746 5.65796 5.68846 5.90530 6.04639 6.17498 6.37810 6.53386 6.69362 6.72194 6.86326 6.93679 6.98135 7.08737 7.50920 7.53899 7.70779 7.79082 8.08016 8.22645 8.79133 9.21859 9.39473 10.87041 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033061 B = 0.004392 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.719379 B = 6374.059284 C = 6868.356549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.296 3.704 3 H 0.043 0.957 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.620 5.620 13 N -0.180 5.180 14 C 0.010 3.990 15 C -0.137 4.137 16 C 0.075 3.925 17 O -0.319 6.319 18 C 0.131 3.869 19 C -0.151 4.151 20 C -0.095 4.095 21 C -0.153 4.153 22 C -0.066 4.066 23 C -0.073 4.073 24 H 0.012 0.988 25 H 0.091 0.909 26 H 0.026 0.974 27 H 0.265 0.735 28 H 0.369 0.631 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.464 -2.761 15.764 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.194 3.806 3 H 0.061 0.939 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.357 5.357 13 N 0.007 4.993 14 C -0.178 4.178 15 C -0.177 4.177 16 C -0.001 4.001 17 O -0.233 6.233 18 C 0.084 3.916 19 C -0.170 4.170 20 C -0.114 4.114 21 C -0.171 4.171 22 C -0.086 4.086 23 C -0.076 4.076 24 H 0.032 0.968 25 H 0.109 0.891 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.207 0.793 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.184 -1.775 15.108 15.368 hybrid contribution 0.413 -1.593 -1.054 1.954 sum 2.597 -3.369 14.054 14.684 Atomic orbital electron populations 1.22203 0.98868 0.99214 1.00621 1.18578 0.90167 0.93646 0.78203 0.93948 1.21215 1.32396 1.13345 0.90192 0.92240 1.24855 0.94776 0.94959 0.98959 1.69885 1.35953 1.22425 1.23997 0.86420 0.79195 0.79295 0.82054 1.20499 1.20955 1.19867 1.49095 1.71831 1.07873 1.06889 1.74016 1.04673 1.27153 0.93450 1.22352 1.11405 0.92183 0.91874 1.21626 1.02600 0.94596 0.98885 1.22760 0.96712 0.96655 0.83961 1.85718 1.75756 1.16710 1.45088 1.18888 0.97817 0.82085 0.92832 1.20399 1.06995 0.94126 0.95483 1.20912 0.99342 0.92842 0.98340 1.21042 1.03806 0.99893 0.92338 1.21151 0.96187 0.92798 0.98452 1.18369 1.05827 0.93436 0.89960 0.96846 0.89060 0.95530 0.92497 0.79299 0.89621 0.89613 0.87441 0.91911 0.85455 0.85823 0.85937 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.29 37.16 0.35 -3.31 16 2 C 0.30 7.48 3.23 -69.09 -0.22 7.26 16 3 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.53 -14.14 8.74 -34.44 -0.30 -14.44 16 5 H 0.06 1.55 7.79 -52.48 -0.41 1.14 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -24.42 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.62 -13.60 6.00 -5.88 -0.04 -13.63 16 13 N -0.18 -3.73 10.92 35.52 0.39 -3.35 16 14 C 0.01 0.18 6.82 -78.89 -0.54 -0.36 16 15 C -0.14 -1.99 6.00 -27.22 -0.16 -2.15 16 16 C 0.08 0.93 6.96 37.25 0.26 1.19 16 17 O -0.32 -4.49 10.23 -18.48 -0.19 -4.68 16 18 C 0.13 1.94 6.55 -38.73 -0.25 1.68 16 19 C -0.15 -1.89 9.97 -39.44 -0.39 -2.28 16 20 C -0.10 -1.08 10.02 -39.52 -0.40 -1.47 16 21 C -0.15 -1.90 10.04 -39.57 -0.40 -2.30 16 22 C -0.07 -1.00 9.63 -39.26 -0.38 -1.38 16 23 C -0.07 -1.19 5.84 -104.81 -0.61 -1.80 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.37 7.47 6.36 -182.59 -1.16 6.31 16 29 H 0.09 1.22 6.08 -51.93 -0.32 0.91 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.13 2.13 7.74 -52.49 -0.41 1.72 16 LS Contribution 303.11 15.07 4.57 4.57 Total: -1.00 -28.75 303.11 -8.36 -37.11 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.55 Total: 5.90 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -3.15 Total: -17.67 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.98 Total: -40.77 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.19 Total: -4.68 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.75 -8.36 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886961.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.542 kcal (2) G-P(sol) polarization free energy of solvation -28.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds