Wall clock time and date at job start Mon Mar 30 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46987 * 2 1 4 4 C 1.50700 * 109.47120 * 240.00355 * 2 1 3 5 5 H 1.08006 * 119.99907 * 240.00212 * 4 2 1 6 6 C 1.37879 * 120.00403 * 59.99237 * 4 2 1 7 7 N 1.31512 * 119.99626 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00157 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46666 * 90.00391 * 8 6 4 10 10 H 1.48498 * 109.47103 * 210.00235 * 8 6 4 11 11 H 1.48505 * 109.46828 * 330.00524 * 8 6 4 12 12 N 1.46495 * 109.47613 * 120.00014 * 2 1 3 13 13 N 1.40103 * 119.99964 * 270.00607 * 12 2 1 14 14 C 1.29753 * 120.00064 * 174.61587 * 13 12 2 15 15 C 1.51858 * 121.76082 * 4.18397 * 14 13 12 16 16 C 1.53182 * 107.32981 * 219.90019 * 15 14 13 17 17 O 1.42716 * 109.50562 * 301.52487 * 16 15 14 18 18 C 1.35593 * 118.78044 * 52.63382 * 17 16 15 19 19 C 1.38645 * 119.96982 * 157.83177 * 18 17 16 20 20 C 1.38216 * 120.08480 * 179.49389 * 19 18 17 21 21 C 1.38427 * 120.62298 * 359.97438 * 20 19 18 22 22 C 1.38091 * 120.11557 * 0.07827 * 21 20 19 23 23 C 1.39238 * 119.61629 * 0.02562 * 22 21 20 24 24 H 1.08993 * 109.47017 * 299.99768 * 1 2 3 25 25 H 1.08997 * 109.47584 * 60.00346 * 1 2 3 26 26 H 1.09003 * 109.46491 * 179.97438 * 1 2 3 27 27 H 0.96998 * 119.99818 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00245 * 89.99680 * 12 2 1 29 29 H 1.08995 * 109.92352 * 339.41255 * 15 14 13 30 30 H 1.09007 * 109.92262 * 100.59980 * 15 14 13 31 31 H 1.09000 * 109.53849 * 181.44275 * 16 15 14 32 32 H 1.09001 * 109.31889 * 61.47266 * 16 15 14 33 33 H 1.07997 * 119.96494 * 359.47426 * 19 18 17 34 34 H 1.07993 * 119.68910 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.94079 * 180.11238 * 21 20 19 36 36 H 1.07999 * 120.19343 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1203 -4.0081 9 1 1.3427 -2.1617 -4.4119 10 1 2.4864 -0.1414 -5.1124 11 1 3.6293 -1.7583 -3.7122 12 7 2.0184 -0.6906 1.1961 13 7 2.2519 0.0300 2.3747 14 6 2.5837 -0.5951 3.4623 15 6 2.8214 -2.0948 3.4815 16 6 2.2150 -2.6363 4.7798 17 8 2.8242 -1.9893 5.8965 18 6 2.8526 -0.6340 5.9300 19 6 2.9975 0.0259 7.1407 20 6 3.0373 1.4070 7.1765 21 6 2.9341 2.1459 6.0105 22 6 2.7882 1.5061 4.7955 23 6 2.7451 0.1151 4.7510 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 0.7093 1.1617 -3.4844 28 1 2.1801 -1.6467 1.1721 29 1 2.3358 -2.5589 2.6232 30 1 3.8914 -2.3016 3.4608 31 1 2.3885 -3.7106 4.8429 32 1 1.1428 -2.4401 4.7863 33 1 3.0790 -0.5398 8.0570 34 1 3.1507 1.9145 8.1230 35 1 2.9684 3.2246 6.0511 36 1 2.7072 2.0814 3.8850 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886961.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:37 Heat of formation + Delta-G solvation = 8.424147 kcal Electronic energy + Delta-G solvation = -18807.644845 eV Core-core repulsion = 15870.959561 eV Total energy + Delta-G solvation = -2936.685284 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.48162 -38.42939 -38.29335 -36.22808 -33.89216 -32.04131 -31.63135 -30.93493 -28.52954 -27.30671 -25.24156 -24.29093 -22.93751 -22.26053 -20.28028 -19.02060 -18.59823 -17.82061 -17.26415 -16.78593 -16.54230 -15.79808 -15.56162 -15.09679 -14.90623 -14.62561 -14.53500 -14.32919 -13.93786 -13.64765 -13.22862 -12.95397 -12.73957 -12.67072 -12.59165 -12.33669 -12.19704 -12.07634 -11.90431 -11.61914 -11.13259 -10.78724 -10.60777 -10.04902 -9.26986 -8.39408 -8.19379 -6.38198 0.04405 0.49562 1.41304 1.41893 1.52447 1.58009 2.08735 2.31196 2.44107 2.96360 3.08398 3.48419 3.77841 3.86969 3.91958 4.13052 4.26282 4.44072 4.48723 4.57853 4.65577 4.70137 4.81312 4.89072 4.96630 5.04730 5.09658 5.22005 5.41703 5.48494 5.56647 5.64882 5.74020 5.83837 5.89823 6.13702 6.36195 6.46008 6.79813 7.33456 7.69330 8.84531 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033061 B = 0.004392 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.719379 B = 6374.059284 C = 6868.356549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.307 3.693 3 H 0.000 1.000 4 C -0.549 4.549 5 H 0.061 0.939 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.971 3.029 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.270 1.270 12 N -0.636 5.636 13 N -0.233 5.233 14 C 0.037 3.963 15 C -0.140 4.140 16 C 0.078 3.922 17 O -0.320 6.320 18 C 0.125 3.875 19 C -0.151 4.151 20 C -0.076 4.076 21 C -0.153 4.153 22 C -0.082 4.082 23 C -0.114 4.114 24 H 0.015 0.985 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.267 0.733 28 H 0.374 0.626 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.146 0.854 32 H 0.061 0.939 33 H 0.155 0.845 34 H 0.166 0.834 35 H 0.148 0.852 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 -3.871 18.174 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.203 3.797 3 H 0.018 0.982 4 C -0.588 4.588 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.194 1.194 12 N -0.374 5.374 13 N -0.043 5.043 14 C -0.153 4.153 15 C -0.180 4.180 16 C 0.003 3.997 17 O -0.234 6.234 18 C 0.077 3.923 19 C -0.170 4.170 20 C -0.095 4.095 21 C -0.171 4.171 22 C -0.103 4.103 23 C -0.117 4.117 24 H 0.034 0.966 25 H 0.089 0.911 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.213 0.787 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.164 0.836 32 H 0.079 0.921 33 H 0.173 0.827 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.928 -2.890 17.536 18.012 hybrid contribution 0.253 -1.184 -1.485 1.916 sum 3.181 -4.074 16.051 16.863 Atomic orbital electron populations 1.22007 0.98645 0.99122 0.99604 1.18146 0.90303 0.91604 0.79638 0.98249 1.21495 1.32652 1.13547 0.91106 0.92118 1.25708 0.94810 0.95591 1.01911 1.70014 1.36797 1.23636 1.24748 0.85362 0.78763 0.78200 0.78106 1.19551 1.20661 1.19449 1.48525 1.74310 1.07732 1.06839 1.74047 1.08598 1.27778 0.93898 1.23113 1.06321 0.94237 0.91589 1.21747 1.03351 0.92443 1.00509 1.22933 0.96292 0.98398 0.82111 1.85724 1.75887 1.16346 1.45464 1.19166 0.97647 0.82410 0.93028 1.20839 1.05704 0.94887 0.95540 1.21417 0.96110 0.92506 0.99437 1.21361 1.02768 1.01361 0.91599 1.21193 0.97216 0.92693 0.99167 1.18539 1.09110 0.94133 0.89902 0.96580 0.91146 0.94964 0.92337 0.78698 0.89535 0.88808 0.83643 0.92065 0.82696 0.81659 0.83472 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.85 9.29 71.98 0.67 -6.18 16 2 C 0.31 16.34 3.23 44.25 0.14 16.48 16 3 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 4 C -0.55 -30.08 8.74 25.60 0.22 -29.85 16 5 H 0.06 3.22 7.79 -2.91 -0.02 3.20 16 6 C 0.02 1.10 5.30 84.66 0.45 1.55 16 7 N -0.91 -51.92 11.32 21.45 0.24 -51.67 16 8 Si 0.97 42.54 29.54 68.60 2.03 44.56 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 N -0.64 -29.28 6.00 -172.53 -1.04 -30.32 16 13 N -0.23 -10.18 10.92 -41.54 -0.45 -10.63 16 14 C 0.04 1.35 6.82 45.84 0.31 1.66 16 15 C -0.14 -3.98 6.00 30.28 0.18 -3.80 16 16 C 0.08 1.76 6.96 72.04 0.50 2.26 16 17 O -0.32 -8.20 10.23 -89.03 -0.91 -9.11 16 18 C 0.12 3.43 6.55 22.82 0.15 3.58 16 19 C -0.15 -3.21 9.97 22.36 0.22 -2.99 16 20 C -0.08 -1.40 10.02 22.31 0.22 -1.18 16 21 C -0.15 -3.46 10.04 22.28 0.22 -3.24 16 22 C -0.08 -2.53 9.63 22.48 0.22 -2.31 16 23 C -0.11 -3.69 5.84 -19.99 -0.12 -3.80 16 24 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 26 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 28 H 0.37 15.73 6.36 -213.32 -1.36 14.37 16 29 H 0.09 2.45 6.08 -2.39 -0.01 2.44 16 30 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 31 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.11 3.84 7.74 -2.91 -0.02 3.82 16 Total: -1.00 -64.76 303.11 3.00 -61.75 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -0.27 Total: 23.23 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 3.40 Total: -27.82 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -1.25 Total: -92.62 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.91 Total: -9.11 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -64.76 3.00 -61.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886961.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.178 kcal (2) G-P(sol) polarization free energy of solvation -64.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds