Wall clock time and date at job start Mon Mar 30 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 120.00261 * 2 1 4 4 H 1.09006 * 109.46649 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47276 * 119.99481 * 3 2 1 6 6 O 1.45190 * 109.47489 * 240.00230 * 3 2 1 7 7 C 1.34231 * 117.00254 * 149.99528 * 6 3 2 8 8 O 1.20822 * 120.00162 * 0.02562 * 7 6 3 9 9 C 1.50704 * 120.00165 * 179.97438 * 7 6 3 10 10 C 1.50699 * 109.47232 * 180.02562 * 9 7 6 11 11 C 1.37630 * 120.12445 * 265.00240 * 10 9 7 12 12 C 1.38620 * 120.24373 * 179.97438 * 11 10 9 13 13 C 1.38648 * 120.50348 * 0.02562 * 12 11 10 14 14 C 1.37594 * 120.24811 * 0.02614 * 13 12 11 15 15 C 1.40700 * 120.12440 * 84.72396 * 10 9 7 16 16 C 1.41388 * 120.24425 * 0.02562 * 15 10 9 17 17 H 1.07999 * 120.00820 * 333.89146 * 16 15 10 18 18 C 1.39955 * 119.99923 * 153.89682 * 16 15 10 19 19 N 1.30826 * 119.99774 * 343.71370 * 18 16 15 20 20 Si 1.86803 * 120.00044 * 163.70601 * 18 16 15 21 21 H 1.48500 * 109.46834 * 90.00011 * 20 18 16 22 22 H 1.48496 * 109.47116 * 209.99992 * 20 18 16 23 23 H 1.48505 * 109.47044 * 330.00303 * 20 18 16 24 24 H 1.07996 * 120.00100 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99882 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.00219 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47166 * 300.00645 * 5 3 2 28 28 H 1.09006 * 109.46666 * 60.00764 * 5 3 2 29 29 H 1.08994 * 109.46821 * 180.02562 * 5 3 2 30 30 H 1.09006 * 109.46700 * 300.00402 * 9 7 6 31 31 H 1.09001 * 109.46808 * 60.00029 * 9 7 6 32 32 H 1.07995 * 119.87977 * 359.97438 * 11 10 9 33 33 H 1.08004 * 119.74707 * 179.97438 * 12 11 10 34 34 H 1.08001 * 119.87631 * 180.02562 * 13 12 11 35 35 H 1.08004 * 120.12921 * 179.97438 * 14 13 12 36 36 H 0.96995 * 119.99788 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 1.2493 6 8 2.8983 1.3821 -1.1855 7 6 3.1389 2.6053 -1.6831 8 8 2.6679 3.5795 -1.1455 9 6 3.9973 2.7637 -2.9115 10 6 4.1107 4.2254 -3.2601 11 6 3.2587 4.7828 -4.1861 12 6 3.3605 6.1272 -4.5082 13 6 4.3197 6.9251 -3.9036 14 6 5.1828 6.3889 -2.9759 15 6 5.0843 5.0268 -2.6359 16 6 5.9615 4.4662 -1.6792 17 1 5.6604 3.5961 -1.1147 18 6 7.2202 5.0388 -1.4636 19 7 7.7180 5.8731 -2.3398 20 14 8.1893 4.6121 0.0754 21 1 9.0479 3.4304 -0.1922 22 1 9.0411 5.7661 0.4598 23 1 7.2491 4.3005 1.1819 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 2.3164 1.3284 2.1392 28 1 3.6515 0.5577 1.2493 29 1 3.4877 2.3303 1.2495 30 1 4.9903 2.3591 -2.7154 31 1 3.5435 2.2255 -3.7437 32 1 2.5080 4.1706 -4.6636 33 1 2.6879 6.5563 -5.2363 34 1 4.3898 7.9715 -4.1619 35 1 5.9296 7.0121 -2.5064 36 1 8.5905 6.2697 -2.1905 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781579204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:59 Heat of formation + Delta-G solvation = -72.624627 kcal Electronic energy + Delta-G solvation = -19125.680540 eV Core-core repulsion = 16153.187967 eV Total energy + Delta-G solvation = -2972.492573 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.53762 -39.49374 -37.79880 -35.53644 -35.27756 -33.54458 -31.39963 -31.04858 -28.82465 -27.00006 -24.84750 -22.87650 -22.49837 -21.11540 -20.86219 -19.09894 -18.70055 -17.48573 -17.41610 -16.83732 -16.29615 -15.69367 -15.45963 -15.24443 -15.07164 -14.40815 -14.23541 -13.88573 -13.58924 -13.41081 -13.21602 -12.94439 -12.86395 -12.77489 -12.67310 -12.53473 -12.14733 -11.87286 -11.67206 -11.36343 -11.32856 -11.24488 -11.04367 -10.54663 -9.26073 -9.23423 -8.62990 -6.33945 0.85426 1.04568 1.16197 1.34905 1.37887 1.45829 1.52391 2.14306 2.18492 2.75835 3.65877 3.76035 3.93952 3.98516 4.13324 4.33338 4.34814 4.42583 4.55994 4.67536 4.72819 4.75465 4.77762 4.94610 5.01333 5.07848 5.16363 5.33852 5.49003 5.51176 5.57396 5.73231 5.74879 6.00311 6.12308 6.18918 6.37930 6.69308 6.93975 6.95827 7.06451 8.33387 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.007174 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.990906 B = 3902.185114 C = 5256.734333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.165 4.165 3 C 0.100 3.900 4 H 0.068 0.932 5 C -0.163 4.163 6 O -0.356 6.356 7 C 0.465 3.535 8 O -0.532 6.532 9 C -0.042 4.042 10 C -0.202 4.202 11 C -0.086 4.086 12 C -0.241 4.241 13 C -0.112 4.112 14 C -0.192 4.192 15 C 0.098 3.902 16 C -0.485 4.485 17 H 0.069 0.931 18 C 0.039 3.961 19 N -0.822 5.822 20 Si 0.969 3.031 21 H -0.255 1.255 22 H -0.265 1.265 23 H -0.267 1.267 24 H 0.095 0.905 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.418 -10.550 3.729 13.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.183 4.183 3 C 0.046 3.954 4 H 0.086 0.914 5 C -0.220 4.220 6 O -0.274 6.274 7 C 0.310 3.690 8 O -0.420 6.420 9 C -0.079 4.079 10 C -0.204 4.204 11 C -0.104 4.104 12 C -0.260 4.260 13 C -0.131 4.131 14 C -0.211 4.211 15 C 0.096 3.904 16 C -0.515 4.515 17 H 0.087 0.913 18 C -0.176 4.176 19 N -0.448 5.448 20 Si 0.790 3.210 21 H -0.180 1.180 22 H -0.190 1.190 23 H -0.192 1.192 24 H 0.113 0.887 25 H 0.153 0.847 26 H 0.152 0.848 27 H 0.114 0.886 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.124 0.876 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.360 -10.130 3.863 13.104 hybrid contribution 0.618 0.508 0.705 1.066 sum -6.742 -9.622 4.568 12.606 Atomic orbital electron populations 1.24218 0.95121 1.03564 0.96213 1.22732 0.96038 0.96417 1.03153 1.21955 0.92177 0.97907 0.83356 0.91415 1.22141 1.00658 1.02153 0.97033 1.86588 1.65008 1.32163 1.43686 1.24386 0.78487 0.80579 0.85561 1.90606 1.49796 1.40954 1.60664 1.20011 0.99564 0.95673 0.92677 1.19477 1.03624 0.93901 1.03374 1.20766 0.97237 0.95262 0.97115 1.20734 1.03603 0.94711 1.06991 1.20986 0.96003 0.98767 0.97323 1.21312 1.01500 0.95730 1.02562 1.17726 0.90880 0.91491 0.90288 1.19619 0.99490 1.12949 1.19427 0.91335 1.26646 0.98552 0.93223 0.99213 1.69865 1.17293 1.24103 1.33510 0.85400 0.78101 0.79360 0.78136 1.17957 1.18975 1.19168 0.88678 0.84721 0.84814 0.88625 0.90358 0.94468 0.87607 0.85845 0.86256 0.86392 0.87406 0.88310 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 14.32 67.78 0.97 -1.70 16 2 C -0.17 -3.53 9.16 25.65 0.23 -3.29 16 3 C 0.10 2.95 2.93 29.85 0.09 3.04 16 4 H 0.07 2.21 6.80 -2.38 -0.02 2.19 16 5 C -0.16 -4.43 9.53 71.98 0.69 -3.75 16 6 O -0.36 -12.45 9.86 -51.43 -0.51 -12.96 16 7 C 0.47 19.21 7.54 71.24 0.54 19.75 16 8 O -0.53 -25.73 15.25 21.98 0.34 -25.40 16 9 C -0.04 -1.69 5.29 29.10 0.15 -1.54 16 10 C -0.20 -9.77 4.43 -19.41 -0.09 -9.86 16 11 C -0.09 -3.82 9.66 22.22 0.21 -3.61 16 12 C -0.24 -10.80 10.05 22.46 0.23 -10.57 16 13 C -0.11 -5.46 10.02 22.22 0.22 -5.24 16 14 C -0.19 -10.51 8.69 22.73 0.20 -10.31 16 15 C 0.10 5.39 5.56 -21.29 -0.12 5.27 16 16 C -0.49 -26.34 8.14 23.46 0.19 -26.15 16 17 H 0.07 3.65 6.67 -2.91 -0.02 3.63 16 18 C 0.04 1.98 5.16 85.26 0.44 2.42 16 19 N -0.82 -43.34 10.95 21.83 0.24 -43.10 16 20 Si 0.97 39.10 29.59 68.60 2.03 41.13 16 21 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H 0.09 1.72 7.83 -2.91 -0.02 1.69 16 25 H 0.13 1.56 8.06 -2.91 -0.02 1.53 16 26 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 27 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 4.27 7.08 -2.38 -0.02 4.26 16 31 H 0.12 3.98 8.05 -2.39 -0.02 3.96 16 32 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 34 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 35 H 0.10 5.66 6.20 -2.91 -0.02 5.64 16 36 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 Total: -1.00 -64.81 313.12 7.12 -57.69 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 1.06 Total: 28.16 kcal Atomic # 6 Polarization: -49.48 SS G_CDS: 3.96 Total: -45.53 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.24 Total: -43.10 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.17 Total: -38.36 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -64.81 7.12 -57.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781579204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.936 kcal (2) G-P(sol) polarization free energy of solvation -64.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds