Wall clock time and date at job start Mon Mar 30 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00130 * 2 1 4 4 H 1.09004 * 109.47015 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47308 * 240.00200 * 3 2 1 6 6 O 1.45195 * 109.47214 * 120.00170 * 3 2 1 7 7 C 1.34230 * 117.00277 * 210.00293 * 6 3 2 8 8 O 1.20823 * 119.99740 * 359.97438 * 7 6 3 9 9 C 1.50695 * 120.00274 * 180.02562 * 7 6 3 10 10 C 1.50701 * 109.47556 * 179.97438 * 9 7 6 11 11 C 1.37633 * 120.12801 * 265.00650 * 10 9 7 12 12 C 1.38617 * 120.24598 * 180.29530 * 11 10 9 13 13 C 1.38655 * 120.49962 * 359.43755 * 12 11 10 14 14 C 1.37604 * 120.25111 * 0.55942 * 13 12 11 15 15 C 1.40697 * 120.12236 * 85.01918 * 10 9 7 16 16 C 1.41390 * 120.25030 * 359.96070 * 15 10 9 17 17 H 1.08004 * 119.99865 * 334.08548 * 16 15 10 18 18 C 1.39940 * 120.00399 * 154.08926 * 16 15 10 19 19 N 1.30822 * 119.99912 * 343.61139 * 18 16 15 20 20 Si 1.86803 * 120.00192 * 163.62242 * 18 16 15 21 21 H 1.48494 * 109.47012 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47407 * 119.99663 * 20 18 16 23 23 H 1.48508 * 109.46756 * 239.99409 * 20 18 16 24 24 H 1.07996 * 120.00147 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.00151 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99494 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47391 * 300.00116 * 5 3 2 28 28 H 1.09002 * 109.46797 * 59.99622 * 5 3 2 29 29 H 1.08995 * 109.47567 * 179.97438 * 5 3 2 30 30 H 1.09003 * 109.47324 * 59.99706 * 9 7 6 31 31 H 1.09000 * 109.47440 * 299.99785 * 9 7 6 32 32 H 1.07994 * 119.88003 * 0.02562 * 11 10 9 33 33 H 1.07999 * 119.74833 * 179.69429 * 12 11 10 34 34 H 1.08004 * 119.87487 * 180.29906 * 13 12 11 35 35 H 1.07992 * 120.12974 * 179.74704 * 14 13 12 36 36 H 0.97001 * 120.00439 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 8 2.8983 1.3820 1.1855 7 6 3.1389 2.6052 1.6831 8 8 2.6680 3.5794 1.1456 9 6 3.9974 2.7634 2.9115 10 6 4.1109 4.2252 3.2602 11 6 5.1867 4.9598 2.8161 12 6 5.2967 6.3030 3.1405 13 6 4.3209 6.9245 3.9048 14 6 3.2367 6.2096 4.3596 15 6 3.1176 4.8439 4.0413 16 6 2.0077 4.0994 4.5026 17 1 1.6799 3.2256 3.9590 18 6 1.3337 4.4947 5.6636 19 7 1.8969 5.3353 6.4928 20 14 -0.3702 3.8219 6.0294 21 1 -0.7806 2.8963 4.9431 22 1 -0.3466 3.0901 7.3212 23 1 -1.3381 4.9451 6.1143 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 3.6514 0.5577 -1.2493 28 1 2.3164 1.3284 -2.1392 29 1 3.4878 2.3303 -1.2495 30 1 4.9904 2.3589 2.7154 31 1 3.5437 2.2253 3.7437 32 1 5.9503 4.4870 2.2163 33 1 6.1468 6.8706 2.7919 34 1 4.4144 7.9728 4.1476 35 1 2.4799 6.6948 4.9581 36 1 1.4296 5.6096 7.2974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781579205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:01 Heat of formation + Delta-G solvation = -58.847339 kcal Electronic energy + Delta-G solvation = -19118.401960 eV Core-core repulsion = 16146.506814 eV Total energy + Delta-G solvation = -2971.895145 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98652 -37.72491 -36.29263 -34.09698 -33.65463 -31.80316 -30.00493 -29.49182 -27.09205 -25.11999 -23.62698 -21.03897 -20.89341 -19.94986 -19.27878 -17.21828 -17.16622 -16.11879 -15.58416 -15.33945 -14.55868 -14.33957 -13.94287 -13.66789 -13.62703 -12.95017 -12.65377 -12.50626 -12.17367 -11.80414 -11.68653 -11.54798 -11.21011 -11.10099 -11.01176 -10.77919 -10.70586 -10.40435 -10.29137 -9.76347 -9.55330 -9.51138 -9.39158 -9.18993 -7.36519 -7.33977 -6.76916 -4.38378 2.00222 2.73719 2.90780 2.99320 3.06857 3.12637 3.24601 3.54820 3.92647 4.63162 4.72796 5.03181 5.15079 5.36408 5.40269 5.66557 5.70686 5.81182 5.92401 5.98662 6.08989 6.13890 6.26312 6.41626 6.45985 6.48515 6.61670 6.75868 7.04513 7.06221 7.26237 7.38306 7.61176 7.88161 8.02665 8.09734 8.27570 8.51274 8.62237 8.87755 8.97138 10.17260 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.007626 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.652297 B = 3670.806022 C = 5172.130249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.150 4.150 3 C 0.108 3.892 4 H 0.086 0.914 5 C -0.163 4.163 6 O -0.360 6.360 7 C 0.459 3.541 8 O -0.493 6.493 9 C -0.042 4.042 10 C -0.194 4.194 11 C -0.077 4.077 12 C -0.240 4.240 13 C -0.104 4.104 14 C -0.158 4.158 15 C 0.130 3.870 16 C -0.457 4.457 17 H 0.074 0.926 18 C 0.078 3.922 19 N -0.792 5.792 20 Si 0.903 3.097 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.271 1.271 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.717 -8.167 -7.698 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.053 3.947 4 H 0.104 0.896 5 C -0.220 4.220 6 O -0.279 6.279 7 C 0.301 3.699 8 O -0.378 6.378 9 C -0.079 4.079 10 C -0.196 4.196 11 C -0.095 4.095 12 C -0.259 4.259 13 C -0.123 4.123 14 C -0.177 4.177 15 C 0.127 3.873 16 C -0.487 4.487 17 H 0.092 0.908 18 C -0.140 4.140 19 N -0.418 5.418 20 Si 0.727 3.273 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.197 1.197 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.135 0.865 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.920 -7.758 -7.658 10.940 hybrid contribution -0.861 -0.157 0.152 0.888 sum -1.782 -7.914 -7.507 11.053 Atomic orbital electron populations 1.23973 0.95727 1.02377 0.98809 1.22764 0.95604 0.97594 1.00868 1.21636 0.92495 0.96617 0.83946 0.89602 1.22124 1.00334 1.02980 0.96572 1.86621 1.64629 1.34006 1.42660 1.24485 0.79505 0.80354 0.85531 1.90620 1.48058 1.39735 1.59426 1.19991 0.97643 0.97810 0.92480 1.19060 0.98157 0.92205 1.10135 1.20320 0.96649 0.94144 0.98399 1.20313 1.01444 0.95185 1.08963 1.20701 0.95536 0.97618 0.98417 1.21298 0.98715 0.94139 1.03585 1.17358 0.90156 0.91461 0.88297 1.19525 1.10874 1.10996 1.07297 0.90760 1.25882 0.98914 0.93876 0.95340 1.69821 1.36626 1.26491 1.08822 0.86341 0.82167 0.79736 0.79041 1.18419 1.19872 1.19651 0.87704 0.88234 0.86532 0.91683 0.91132 0.91661 0.89407 0.87483 0.89555 0.89515 0.89458 0.86453 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 14.32 29.01 0.42 -1.50 16 2 C -0.15 -1.86 9.16 -36.03 -0.33 -2.19 16 3 C 0.11 1.63 2.93 -27.88 -0.08 1.55 16 4 H 0.09 1.44 6.80 -51.93 -0.35 1.09 16 5 C -0.16 -2.07 9.53 37.16 0.35 -1.72 16 6 O -0.36 -6.44 9.86 -39.26 -0.39 -6.83 16 7 C 0.46 9.48 7.56 36.00 0.27 9.76 16 8 O -0.49 -11.70 15.25 -18.75 -0.29 -11.99 16 9 C -0.04 -0.85 5.29 -29.04 -0.15 -1.01 16 10 C -0.19 -4.69 4.43 -103.91 -0.46 -5.15 16 11 C -0.08 -1.76 9.66 -39.66 -0.38 -2.15 16 12 C -0.24 -5.53 10.05 -39.29 -0.39 -5.93 16 13 C -0.10 -2.52 10.02 -39.66 -0.40 -2.92 16 14 C -0.16 -4.20 8.68 -38.87 -0.34 -4.54 16 15 C 0.13 3.47 5.56 -106.83 -0.59 2.87 16 16 C -0.46 -12.08 8.14 -37.75 -0.31 -12.39 16 17 H 0.07 1.93 6.68 -52.48 -0.35 1.58 16 18 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 19 N -0.79 -20.38 10.97 55.55 0.61 -19.77 16 20 Si 0.90 18.90 29.59 -169.99 -5.03 13.87 16 21 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H 0.10 0.93 8.06 -52.49 -0.42 0.51 16 25 H 0.10 1.14 7.83 -52.48 -0.41 0.73 16 26 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.51 8.05 -51.93 -0.42 1.09 16 31 H 0.11 2.17 7.06 -51.93 -0.37 1.80 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 35 H 0.12 3.20 6.22 -52.49 -0.33 2.87 16 36 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -29.32 313.16 -7.61 -36.93 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.74 Total: 6.50 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -2.49 Total: -23.43 kcal Atomic # 7 Polarization: -20.38 SS G_CDS: 0.61 Total: -19.77 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.67 Total: -18.81 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.32 -7.61 -36.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781579205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.922 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds