Wall clock time and date at job start Mon Mar 30 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00130 * 2 1 4 4 H 1.09004 * 109.47015 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47308 * 240.00200 * 3 2 1 6 6 O 1.45195 * 109.47214 * 120.00170 * 3 2 1 7 7 C 1.34230 * 117.00277 * 210.00293 * 6 3 2 8 8 O 1.20823 * 119.99740 * 359.97438 * 7 6 3 9 9 C 1.50695 * 120.00274 * 180.02562 * 7 6 3 10 10 C 1.50701 * 109.47556 * 179.97438 * 9 7 6 11 11 C 1.37633 * 120.12801 * 265.00650 * 10 9 7 12 12 C 1.38617 * 120.24598 * 180.29530 * 11 10 9 13 13 C 1.38655 * 120.49962 * 359.43755 * 12 11 10 14 14 C 1.37604 * 120.25111 * 0.55942 * 13 12 11 15 15 C 1.40697 * 120.12236 * 85.01918 * 10 9 7 16 16 C 1.41390 * 120.25030 * 359.96070 * 15 10 9 17 17 H 1.08004 * 119.99865 * 334.08548 * 16 15 10 18 18 C 1.39940 * 120.00399 * 154.08926 * 16 15 10 19 19 N 1.30822 * 119.99912 * 343.61139 * 18 16 15 20 20 Si 1.86803 * 120.00192 * 163.62242 * 18 16 15 21 21 H 1.48494 * 109.47012 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47407 * 119.99663 * 20 18 16 23 23 H 1.48508 * 109.46756 * 239.99409 * 20 18 16 24 24 H 1.07996 * 120.00147 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.00151 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99494 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47391 * 300.00116 * 5 3 2 28 28 H 1.09002 * 109.46797 * 59.99622 * 5 3 2 29 29 H 1.08995 * 109.47567 * 179.97438 * 5 3 2 30 30 H 1.09003 * 109.47324 * 59.99706 * 9 7 6 31 31 H 1.09000 * 109.47440 * 299.99785 * 9 7 6 32 32 H 1.07994 * 119.88003 * 0.02562 * 11 10 9 33 33 H 1.07999 * 119.74833 * 179.69429 * 12 11 10 34 34 H 1.08004 * 119.87487 * 180.29906 * 13 12 11 35 35 H 1.07992 * 120.12974 * 179.74704 * 14 13 12 36 36 H 0.97001 * 120.00439 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 8 2.8983 1.3820 1.1855 7 6 3.1389 2.6052 1.6831 8 8 2.6680 3.5794 1.1456 9 6 3.9974 2.7634 2.9115 10 6 4.1109 4.2252 3.2602 11 6 5.1867 4.9598 2.8161 12 6 5.2967 6.3030 3.1405 13 6 4.3209 6.9245 3.9048 14 6 3.2367 6.2096 4.3596 15 6 3.1176 4.8439 4.0413 16 6 2.0077 4.0994 4.5026 17 1 1.6799 3.2256 3.9590 18 6 1.3337 4.4947 5.6636 19 7 1.8969 5.3353 6.4928 20 14 -0.3702 3.8219 6.0294 21 1 -0.7806 2.8963 4.9431 22 1 -0.3466 3.0901 7.3212 23 1 -1.3381 4.9451 6.1143 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 3.6514 0.5577 -1.2493 28 1 2.3164 1.3284 -2.1392 29 1 3.4878 2.3303 -1.2495 30 1 4.9904 2.3589 2.7154 31 1 3.5437 2.2253 3.7437 32 1 5.9503 4.4870 2.2163 33 1 6.1468 6.8706 2.7919 34 1 4.4144 7.9728 4.1476 35 1 2.4799 6.6948 4.9581 36 1 1.4296 5.6096 7.2974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781579205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:01 Heat of formation + Delta-G solvation = -72.874888 kcal Electronic energy + Delta-G solvation = -19119.010240 eV Core-core repulsion = 16146.506814 eV Total energy + Delta-G solvation = -2972.503425 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.53661 -39.49703 -37.79823 -35.54213 -35.28074 -33.54768 -31.40130 -31.04813 -28.82859 -26.99942 -24.85119 -22.87130 -22.50427 -21.12195 -20.87486 -19.10649 -18.70331 -17.59291 -17.16225 -17.03411 -16.27017 -15.68622 -15.43776 -15.24294 -15.10343 -14.42158 -14.22789 -13.88054 -13.59918 -13.42187 -13.20061 -12.95672 -12.86695 -12.75590 -12.69035 -12.52922 -12.13851 -11.87950 -11.67163 -11.36818 -11.31004 -11.24818 -11.06157 -10.55916 -9.26548 -9.23672 -8.63855 -6.34744 0.84194 1.03088 1.15598 1.34357 1.38400 1.47450 1.50302 2.13815 2.18001 2.74900 3.65277 3.75612 3.95787 3.98558 4.13585 4.32917 4.35563 4.42217 4.55994 4.67593 4.73918 4.75988 4.78893 4.93005 5.01166 5.09028 5.15959 5.33352 5.48677 5.50650 5.55596 5.72586 5.74146 5.99961 6.11897 6.18616 6.37484 6.68951 6.93609 6.95579 7.05889 8.32910 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.007626 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.652297 B = 3670.806022 C = 5172.130249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.165 4.165 3 C 0.097 3.903 4 H 0.061 0.939 5 C -0.157 4.157 6 O -0.356 6.356 7 C 0.466 3.534 8 O -0.532 6.532 9 C -0.042 4.042 10 C -0.201 4.201 11 C -0.085 4.085 12 C -0.241 4.241 13 C -0.112 4.112 14 C -0.191 4.191 15 C 0.097 3.903 16 C -0.486 4.486 17 H 0.068 0.932 18 C 0.038 3.962 19 N -0.822 5.822 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.259 1.259 23 H -0.266 1.266 24 H 0.134 0.866 25 H 0.090 0.910 26 H 0.138 0.862 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.499 -9.898 -8.590 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.043 3.957 4 H 0.079 0.921 5 C -0.214 4.214 6 O -0.274 6.274 7 C 0.310 3.690 8 O -0.420 6.420 9 C -0.079 4.079 10 C -0.203 4.203 11 C -0.103 4.103 12 C -0.260 4.260 13 C -0.131 4.131 14 C -0.211 4.211 15 C 0.095 3.905 16 C -0.515 4.515 17 H 0.086 0.914 18 C -0.177 4.177 19 N -0.448 5.448 20 Si 0.791 3.209 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.191 1.191 24 H 0.152 0.848 25 H 0.108 0.892 26 H 0.156 0.844 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.685 -9.505 -8.552 12.805 hybrid contribution -0.874 0.379 0.341 1.012 sum -1.559 -9.126 -8.211 12.375 Atomic orbital electron populations 1.24222 0.95477 1.03374 0.96657 1.22783 0.95940 0.96779 1.02736 1.21987 0.92437 0.97544 0.83745 0.92076 1.22101 1.00498 1.02582 0.96195 1.86585 1.64826 1.32196 1.43830 1.24378 0.78792 0.80603 0.85223 1.90605 1.49623 1.41095 1.60712 1.20012 0.99694 0.95811 0.92420 1.19473 0.97676 0.94170 1.08971 1.20763 0.97004 0.94345 0.98195 1.20741 1.01771 0.95669 1.07779 1.20992 0.95128 0.98706 0.98249 1.21301 0.99732 0.94756 1.05262 1.17743 0.91337 0.91877 0.89563 1.19645 1.12120 1.11500 1.08253 0.91416 1.26647 1.02231 0.94074 0.94740 1.69869 1.38127 1.27487 1.09366 0.85341 0.77347 0.79113 0.79100 1.18746 1.18335 1.19105 0.84775 0.89165 0.84416 0.89917 0.88885 0.93631 0.85732 0.87702 0.86185 0.86345 0.87392 0.88378 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 14.32 67.78 0.97 -2.25 16 2 C -0.16 -3.72 9.16 25.65 0.23 -3.49 16 3 C 0.10 2.86 2.93 29.85 0.09 2.95 16 4 H 0.06 2.09 6.80 -2.38 -0.02 2.08 16 5 C -0.16 -3.75 9.53 71.98 0.69 -3.06 16 6 O -0.36 -12.45 9.86 -51.42 -0.51 -12.95 16 7 C 0.47 19.21 7.56 71.23 0.54 19.75 16 8 O -0.53 -25.72 15.25 21.97 0.34 -25.38 16 9 C -0.04 -1.70 5.29 29.10 0.15 -1.54 16 10 C -0.20 -9.72 4.43 -19.41 -0.09 -9.81 16 11 C -0.09 -3.78 9.66 22.22 0.21 -3.56 16 12 C -0.24 -10.73 10.05 22.46 0.23 -10.50 16 13 C -0.11 -5.45 10.02 22.22 0.22 -5.23 16 14 C -0.19 -10.48 8.68 22.73 0.20 -10.29 16 15 C 0.10 5.33 5.56 -21.29 -0.12 5.21 16 16 C -0.49 -26.47 8.14 23.46 0.19 -26.28 16 17 H 0.07 3.64 6.68 -2.91 -0.02 3.62 16 18 C 0.04 1.95 5.16 85.26 0.44 2.39 16 19 N -0.82 -43.52 10.97 21.82 0.24 -43.28 16 20 Si 0.97 39.30 29.59 68.60 2.03 41.33 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 24 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 25 H 0.09 1.97 7.83 -2.91 -0.02 1.95 16 26 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.12 3.99 8.05 -2.39 -0.02 3.97 16 31 H 0.10 4.25 7.06 -2.39 -0.02 4.24 16 32 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 34 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 35 H 0.10 5.63 6.22 -2.91 -0.02 5.61 16 36 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 Total: -1.00 -65.03 313.16 7.12 -57.91 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 1.06 Total: 28.09 kcal Atomic # 6 Polarization: -49.67 SS G_CDS: 3.96 Total: -45.71 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.24 Total: -43.28 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.17 Total: -38.34 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -65.03 7.12 -57.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781579205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.966 kcal (2) G-P(sol) polarization free energy of solvation -65.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds