Wall clock time and date at job start Mon Mar 30 2020 06:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47407 * 2 1 4 4 C 1.53009 * 109.47286 * 119.99780 * 2 1 3 5 5 C 1.50690 * 109.47197 * 185.00192 * 4 2 1 6 6 H 1.08003 * 120.00517 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99972 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99780 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47077 * 60.00168 * 9 7 5 11 11 H 1.48502 * 109.46973 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47136 * 300.00178 * 9 7 5 13 13 O 1.42903 * 109.47147 * 239.99475 * 2 1 3 14 14 C 1.35658 * 116.99665 * 84.88033 * 13 2 1 15 15 C 1.39079 * 119.97061 * 174.27055 * 14 13 2 16 16 C 1.36399 * 120.25593 * 179.75648 * 15 14 13 17 17 C 1.40581 * 120.25685 * 0.54606 * 16 15 14 18 18 C 1.39663 * 119.39828 * 359.71270 * 17 16 15 19 19 C 1.37930 * 119.89199 * 0.02562 * 18 17 16 20 20 C 1.50984 * 109.57503 * 179.97438 * 18 17 16 21 21 C 1.53492 * 106.25287 * 0.02562 * 20 18 17 22 22 C 1.46938 * 129.95677 * 179.69019 * 17 16 15 23 23 O 1.21292 * 125.91223 * 359.97438 * 22 17 16 24 24 H 1.09000 * 109.46717 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46818 * 300.00295 * 1 2 3 26 26 H 1.08996 * 109.46773 * 60.00438 * 1 2 3 27 27 H 1.08999 * 109.46449 * 305.00101 * 4 2 1 28 28 H 1.08997 * 109.46808 * 64.99747 * 4 2 1 29 29 H 0.97002 * 119.99931 * 180.02562 * 8 7 5 30 30 H 1.08002 * 119.87200 * 0.02643 * 15 14 13 31 31 H 1.07990 * 119.87295 * 180.25963 * 16 15 14 32 32 H 1.08006 * 119.93073 * 179.97438 * 19 18 17 33 33 H 1.08998 * 110.09687 * 119.19921 * 20 18 17 34 34 H 1.08999 * 110.10272 * 240.80667 * 20 18 17 35 35 H 1.09007 * 110.26712 * 241.02653 * 21 20 18 36 36 H 1.08996 * 110.35028 * 119.01218 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5393 7 6 4.2303 -1.1925 2.3585 8 7 3.5763 -1.8368 3.3001 9 14 6.0921 -1.0613 2.4368 10 1 6.4854 0.3694 2.4953 11 1 6.5870 -1.7612 3.6494 12 1 6.6838 -1.6883 1.2277 13 8 2.0064 -0.6738 -1.1667 14 6 2.1099 0.0605 -2.3027 15 6 2.6778 -0.4991 -3.4423 16 6 2.7803 0.2323 -4.5891 17 6 2.3233 1.5613 -4.6249 18 6 1.7582 2.1231 -3.4779 19 6 1.6542 1.3733 -2.3249 20 6 1.3476 3.5479 -3.7622 21 6 1.7204 3.8185 -5.2263 22 6 2.3336 2.5333 -5.7268 23 8 2.7614 2.3371 -6.8446 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -0.2616 2.1370 28 1 1.7517 -1.7715 1.2057 29 1 4.0606 -2.2429 4.0360 30 1 3.0350 -1.5181 -3.4205 31 1 3.2185 -0.2097 -5.4716 32 1 1.2178 1.8073 -1.4374 33 1 0.2728 3.6629 -3.6223 34 1 1.8865 4.2312 -3.1057 35 1 2.4446 4.6309 -5.2877 36 1 0.8298 4.0630 -5.8053 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829180882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:34 Heat of formation + Delta-G solvation = -64.513094 kcal Electronic energy + Delta-G solvation = -18809.878616 eV Core-core repulsion = 15837.737785 eV Total energy + Delta-G solvation = -2972.140831 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64230 -39.19787 -37.29594 -34.80798 -33.38215 -31.63355 -30.63518 -28.63484 -27.57053 -25.83301 -23.69345 -22.90375 -21.13521 -20.40739 -19.66134 -17.49079 -16.49056 -16.32727 -16.03333 -15.88818 -14.74570 -14.62431 -14.29566 -14.13224 -13.60050 -13.52566 -13.14930 -12.80484 -12.56840 -12.36539 -12.10061 -11.95949 -11.79825 -11.56422 -11.44552 -11.04393 -10.77938 -10.72892 -10.47607 -10.10815 -9.66095 -9.49518 -9.21003 -8.84317 -8.44849 -7.93762 -6.08110 -4.10324 0.80438 1.43593 2.48601 3.30488 3.34855 3.38214 3.66138 3.85992 3.97270 4.39774 4.40865 4.61503 4.89536 4.98821 5.09183 5.29071 5.31752 5.42474 5.49583 5.53866 5.58936 5.66278 5.67985 5.68906 5.86695 6.02294 6.06594 6.33618 6.38395 6.46214 6.52065 6.62886 6.80947 7.38832 7.48365 7.53920 7.87497 7.94748 8.27087 8.92860 9.53710 11.03122 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.025532 B = 0.004788 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.402080 B = 5846.127136 C = 6274.868409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.083 3.917 3 H 0.066 0.934 4 C 0.026 3.974 5 C -0.519 4.519 6 H 0.055 0.945 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 O -0.281 6.281 14 C 0.197 3.803 15 C -0.177 4.177 16 C -0.008 4.008 17 C -0.258 4.258 18 C -0.005 4.005 19 C -0.224 4.224 20 C -0.084 4.084 21 C -0.171 4.171 22 C 0.412 3.588 23 O -0.463 6.463 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.395 9.202 -12.127 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.028 3.972 3 H 0.084 0.916 4 C -0.011 4.011 5 C -0.557 4.557 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 O -0.192 6.192 14 C 0.147 3.853 15 C -0.196 4.196 16 C -0.027 4.027 17 C -0.259 4.259 18 C -0.005 4.005 19 C -0.243 4.243 20 C -0.121 4.121 21 C -0.209 4.209 22 C 0.292 3.708 23 O -0.340 6.340 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.115 8.791 -12.463 16.431 hybrid contribution 0.940 0.144 0.400 1.032 sum -5.175 8.935 -12.062 15.878 Atomic orbital electron populations 1.22422 0.96637 1.02842 1.01668 1.23017 0.92088 0.97307 0.84831 0.91569 1.19278 0.96660 0.96558 0.88600 1.21062 0.91598 1.34919 1.08088 0.92666 1.24967 0.98526 0.95099 0.95591 1.69933 1.35770 1.35720 1.12036 0.86637 0.85554 0.78269 0.77480 1.20229 1.21209 1.20129 1.86281 1.78462 1.38192 1.16238 1.19452 0.88789 0.89516 0.87498 1.20159 1.05948 1.02135 0.91346 1.20586 0.93354 0.91689 0.97042 1.20788 1.11366 0.96571 0.97186 1.20281 0.92811 0.95030 0.92414 1.20755 1.09843 0.94491 0.99214 1.20812 1.02603 0.93012 0.95654 1.22278 1.03115 0.98422 0.97039 1.22292 0.73863 0.88647 0.85985 1.90521 1.39201 1.82161 1.22114 0.91750 0.91120 0.93167 0.94172 0.95179 0.92792 0.84455 0.85259 0.84512 0.89096 0.88974 0.87693 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 9.17 37.16 0.34 -2.45 16 2 C 0.08 1.61 2.17 -26.73 -0.06 1.55 16 3 H 0.07 1.24 6.31 -51.93 -0.33 0.91 16 4 C 0.03 0.63 4.68 -27.88 -0.13 0.50 16 5 C -0.52 -14.21 8.88 -34.44 -0.31 -14.52 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 O -0.28 -5.62 9.54 -18.67 -0.18 -5.80 16 14 C 0.20 3.37 6.61 -38.99 -0.26 3.11 16 15 C -0.18 -2.76 9.91 -39.93 -0.40 -3.16 16 16 C -0.01 -0.12 10.05 -39.36 -0.40 -0.52 16 17 C -0.26 -3.62 6.11 -104.96 -0.64 -4.26 16 18 C 0.00 -0.06 6.20 -104.06 -0.65 -0.71 16 19 C -0.22 -3.33 8.22 -39.42 -0.32 -3.65 16 20 C -0.08 -0.76 6.80 -27.49 -0.19 -0.95 16 21 C -0.17 -1.52 6.86 -27.51 -0.19 -1.71 16 22 C 0.41 5.42 7.75 -30.67 -0.24 5.18 16 23 O -0.46 -7.40 18.03 5.55 0.10 -7.30 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.68 6.90 -51.93 -0.36 0.32 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.14 1.89 5.40 -52.48 -0.28 1.60 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 306.50 15.07 4.62 4.62 Total: -1.00 -31.13 306.50 -8.01 -39.14 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -4.74 Total: -1.70 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -3.53 Total: -20.00 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.38 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.13 -8.01 -39.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.375 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds