Wall clock time and date at job start Mon Mar 30 2020 06:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47407 * 2 1 4 4 C 1.53009 * 109.47286 * 119.99780 * 2 1 3 5 5 C 1.50690 * 109.47197 * 185.00192 * 4 2 1 6 6 H 1.08003 * 120.00517 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99972 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99780 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47077 * 60.00168 * 9 7 5 11 11 H 1.48502 * 109.46973 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47136 * 300.00178 * 9 7 5 13 13 O 1.42903 * 109.47147 * 239.99475 * 2 1 3 14 14 C 1.35658 * 116.99665 * 84.88033 * 13 2 1 15 15 C 1.39079 * 119.97061 * 174.27055 * 14 13 2 16 16 C 1.36399 * 120.25593 * 179.75648 * 15 14 13 17 17 C 1.40581 * 120.25685 * 0.54606 * 16 15 14 18 18 C 1.39663 * 119.39828 * 359.71270 * 17 16 15 19 19 C 1.37930 * 119.89199 * 0.02562 * 18 17 16 20 20 C 1.50984 * 109.57503 * 179.97438 * 18 17 16 21 21 C 1.53492 * 106.25287 * 0.02562 * 20 18 17 22 22 C 1.46938 * 129.95677 * 179.69019 * 17 16 15 23 23 O 1.21292 * 125.91223 * 359.97438 * 22 17 16 24 24 H 1.09000 * 109.46717 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46818 * 300.00295 * 1 2 3 26 26 H 1.08996 * 109.46773 * 60.00438 * 1 2 3 27 27 H 1.08999 * 109.46449 * 305.00101 * 4 2 1 28 28 H 1.08997 * 109.46808 * 64.99747 * 4 2 1 29 29 H 0.97002 * 119.99931 * 180.02562 * 8 7 5 30 30 H 1.08002 * 119.87200 * 0.02643 * 15 14 13 31 31 H 1.07990 * 119.87295 * 180.25963 * 16 15 14 32 32 H 1.08006 * 119.93073 * 179.97438 * 19 18 17 33 33 H 1.08998 * 110.09687 * 119.19921 * 20 18 17 34 34 H 1.08999 * 110.10272 * 240.80667 * 20 18 17 35 35 H 1.09007 * 110.26712 * 241.02653 * 21 20 18 36 36 H 1.08996 * 110.35028 * 119.01218 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5393 7 6 4.2303 -1.1925 2.3585 8 7 3.5763 -1.8368 3.3001 9 14 6.0921 -1.0613 2.4368 10 1 6.4854 0.3694 2.4953 11 1 6.5870 -1.7612 3.6494 12 1 6.6838 -1.6883 1.2277 13 8 2.0064 -0.6738 -1.1667 14 6 2.1099 0.0605 -2.3027 15 6 2.6778 -0.4991 -3.4423 16 6 2.7803 0.2323 -4.5891 17 6 2.3233 1.5613 -4.6249 18 6 1.7582 2.1231 -3.4779 19 6 1.6542 1.3733 -2.3249 20 6 1.3476 3.5479 -3.7622 21 6 1.7204 3.8185 -5.2263 22 6 2.3336 2.5333 -5.7268 23 8 2.7614 2.3371 -6.8446 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -0.2616 2.1370 28 1 1.7517 -1.7715 1.2057 29 1 4.0606 -2.2429 4.0360 30 1 3.0350 -1.5181 -3.4205 31 1 3.2185 -0.2097 -5.4716 32 1 1.2178 1.8073 -1.4374 33 1 0.2728 3.6629 -3.6223 34 1 1.8865 4.2312 -3.1057 35 1 2.4446 4.6309 -5.2877 36 1 0.8298 4.0630 -5.8053 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829180882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:34 Heat of formation + Delta-G solvation = -81.936425 kcal Electronic energy + Delta-G solvation = -18810.634148 eV Core-core repulsion = 15837.737785 eV Total energy + Delta-G solvation = -2972.896363 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.76036 -40.44024 -38.49116 -35.99048 -35.14697 -33.31655 -31.76514 -29.68796 -29.36318 -26.78764 -25.33649 -24.32070 -22.22011 -21.77258 -20.80043 -18.81069 -18.51622 -17.55987 -17.15137 -16.72833 -16.56270 -16.05873 -15.51284 -15.32516 -14.91315 -14.53903 -14.42986 -14.10303 -13.81946 -13.70395 -13.52581 -13.30783 -13.15247 -12.91778 -12.73854 -12.64183 -12.36888 -12.16469 -11.81272 -11.67688 -11.31286 -11.08623 -10.68466 -10.59080 -9.91886 -9.18994 -8.22229 -6.31218 -0.31211 0.32367 1.38207 1.40411 1.41163 1.48247 2.31509 2.39187 2.73970 3.03930 3.12785 3.49315 3.75238 3.88148 4.04430 4.16880 4.20562 4.26237 4.30088 4.39285 4.43152 4.55892 4.78756 4.79975 4.91339 5.01957 5.08406 5.09796 5.18184 5.22037 5.29220 5.36905 5.37578 5.47420 5.72984 5.75759 6.16705 6.53757 6.56850 6.80590 7.36634 8.89120 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.025532 B = 0.004788 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.402080 B = 5846.127136 C = 6274.868409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 H 0.074 0.926 4 C 0.027 3.973 5 C -0.533 4.533 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.956 3.044 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.275 1.275 13 O -0.312 6.312 14 C 0.167 3.833 15 C -0.191 4.191 16 C -0.013 4.013 17 C -0.272 4.272 18 C 0.003 3.997 19 C -0.226 4.226 20 C -0.080 4.080 21 C -0.160 4.160 22 C 0.409 3.591 23 O -0.498 6.498 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.029 0.971 28 H -0.001 1.001 29 H 0.265 0.735 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 11.865 -13.135 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.035 3.965 3 H 0.092 0.908 4 C -0.009 4.009 5 C -0.571 4.571 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.200 1.200 13 O -0.225 6.225 14 C 0.119 3.881 15 C -0.209 4.209 16 C -0.032 4.032 17 C -0.274 4.274 18 C 0.002 3.998 19 C -0.245 4.245 20 C -0.117 4.117 21 C -0.197 4.197 22 C 0.291 3.709 23 O -0.378 6.378 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.047 0.953 28 H 0.017 0.983 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.462 11.469 -13.477 18.839 hybrid contribution 1.044 -0.680 0.621 1.392 sum -5.419 10.789 -12.856 17.636 Atomic orbital electron populations 1.22328 0.93654 1.02968 1.03591 1.22732 0.94303 0.96394 0.83022 0.90820 1.19132 0.95422 0.95218 0.91177 1.21431 0.93318 1.34570 1.07807 0.93057 1.25809 1.03212 0.94814 0.95321 1.70047 1.37553 1.36669 1.12685 0.85636 0.79992 0.78779 0.77495 1.19013 1.20550 1.20026 1.86191 1.79731 1.39396 1.17136 1.19704 0.90744 0.90771 0.86833 1.20247 1.06549 1.02450 0.91691 1.20772 0.93234 0.92283 0.96878 1.21234 1.11007 0.96651 0.98469 1.20697 0.91121 0.96978 0.90978 1.20877 1.09627 0.93614 1.00364 1.20997 1.04535 0.90186 0.95933 1.22346 1.04275 0.96216 0.96816 1.22863 0.72995 0.90042 0.84988 1.90513 1.40900 1.83020 1.23360 0.92585 0.89668 0.90617 0.95295 0.98310 0.92663 0.84696 0.84215 0.83371 0.86339 0.86918 0.85477 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.09 9.17 71.98 0.66 -4.43 16 2 C 0.09 3.54 2.17 30.60 0.07 3.60 16 3 H 0.07 2.71 6.31 -2.39 -0.02 2.70 16 4 C 0.03 1.38 4.68 29.85 0.14 1.52 16 5 C -0.53 -29.87 8.88 25.60 0.23 -29.64 16 6 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -55.35 13.29 21.45 0.28 -55.07 16 9 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 O -0.31 -12.80 9.54 -89.73 -0.86 -13.66 16 14 C 0.17 5.74 6.61 22.65 0.15 5.89 16 15 C -0.19 -6.07 9.91 22.04 0.22 -5.85 16 16 C -0.01 -0.38 10.05 22.41 0.23 -0.16 16 17 C -0.27 -7.18 6.11 -20.08 -0.12 -7.30 16 18 C 0.00 0.06 6.20 -19.50 -0.12 -0.06 16 19 C -0.23 -6.32 8.22 22.37 0.18 -6.14 16 20 C -0.08 -1.06 6.80 30.10 0.20 -0.85 16 21 C -0.16 -2.11 6.86 30.09 0.21 -1.90 16 22 C 0.41 9.77 7.75 28.04 0.22 9.99 16 23 O -0.50 -15.27 18.03 -3.07 -0.06 -15.33 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 25 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.07 1.90 6.90 -2.39 -0.02 1.88 16 27 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 31 H 0.14 3.53 8.06 -2.92 -0.02 3.51 16 32 H 0.15 3.72 5.40 -2.91 -0.02 3.71 16 33 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -69.46 306.50 5.20 -64.27 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.08 Total: 7.96 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 2.72 Total: -34.49 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.91 Total: -28.98 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -69.46 5.20 -64.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.670 kcal (2) G-P(sol) polarization free energy of solvation -69.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds