Wall clock time and date at job start Mon Mar 30 2020 06:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47449 * 2 1 4 4 C 1.53008 * 109.46987 * 240.00434 * 2 1 3 5 5 C 1.50699 * 109.47080 * 175.00182 * 4 2 1 6 6 H 1.08002 * 120.00380 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99808 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99943 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99949 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46963 * 89.99658 * 9 7 5 11 11 H 1.48500 * 109.47044 * 209.99804 * 9 7 5 12 12 H 1.48506 * 109.46828 * 329.99855 * 9 7 5 13 13 O 1.42903 * 109.47680 * 120.00640 * 2 1 3 14 14 C 1.35662 * 116.99710 * 275.12152 * 13 2 1 15 15 C 1.39073 * 119.96562 * 185.44636 * 14 13 2 16 16 C 1.36400 * 120.24818 * 179.97438 * 15 14 13 17 17 C 1.40573 * 120.26553 * 0.04244 * 16 15 14 18 18 C 1.39668 * 119.39761 * 359.97438 * 17 16 15 19 19 C 1.37934 * 119.88708 * 359.97438 * 18 17 16 20 20 C 1.50980 * 109.57952 * 179.97438 * 18 17 16 21 21 C 1.53496 * 106.25188 * 0.02562 * 20 18 17 22 22 C 1.47129 * 129.93870 * 179.91505 * 17 16 15 23 23 O 1.21302 * 126.02166 * 0.02562 * 22 17 16 24 24 H 1.09005 * 109.46703 * 299.99285 * 1 2 3 25 25 H 1.08993 * 109.47100 * 59.99324 * 1 2 3 26 26 H 1.08999 * 109.47120 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46937 * 294.99952 * 4 2 1 28 28 H 1.09000 * 109.46831 * 55.00133 * 4 2 1 29 29 H 0.96994 * 120.00101 * 180.02562 * 8 7 5 30 30 H 1.07991 * 119.88200 * 359.97438 * 15 14 13 31 31 H 1.08008 * 119.87089 * 180.02562 * 16 15 14 32 32 H 1.08005 * 119.92880 * 179.97438 * 19 18 17 33 33 H 1.08998 * 110.09891 * 240.80482 * 20 18 17 34 34 H 1.08996 * 110.14836 * 119.22175 * 20 18 17 35 35 H 1.08998 * 110.26968 * 118.97008 * 21 20 18 36 36 H 1.09010 * 110.26615 * 240.93644 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0855 -0.5397 7 6 4.2303 -1.1926 -2.3586 8 7 3.5762 -1.8367 -3.3003 9 14 6.0919 -1.0602 -2.4376 10 1 6.7007 -2.2129 -1.7263 11 1 6.5288 -1.0675 -3.8569 12 1 6.5260 0.2050 -1.7925 13 8 2.0064 -0.6738 1.1667 14 6 2.1101 0.0605 2.3027 15 6 2.6726 -0.5011 3.4439 16 6 2.7801 0.2321 4.5891 17 6 2.3224 1.5607 4.6253 18 6 1.7574 2.1227 3.4783 19 6 1.6542 1.3732 2.3249 20 6 1.3447 3.5468 3.7632 21 6 1.7173 3.8172 5.2275 22 6 2.3306 2.5328 5.7297 23 8 2.7562 2.3375 6.8487 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7516 -1.7715 -1.2058 28 1 1.6053 -0.2616 -2.1370 29 1 4.0605 -2.2435 -4.0357 30 1 3.0257 -1.5214 3.4234 31 1 3.2184 -0.2100 5.4717 32 1 1.2171 1.8070 1.4377 33 1 0.2698 3.6605 3.6227 34 1 1.8824 4.2318 3.1077 35 1 2.4403 4.6305 5.2891 36 1 0.8256 4.0609 5.8052 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829180883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:36 Heat of formation + Delta-G solvation = -82.052435 kcal Electronic energy + Delta-G solvation = -18809.344780 eV Core-core repulsion = 15836.443386 eV Total energy + Delta-G solvation = -2972.901394 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.75320 -40.43455 -38.49179 -35.98949 -35.14685 -33.31690 -31.76348 -29.68408 -29.36419 -26.78671 -25.33801 -24.31887 -22.21861 -21.77031 -20.80144 -18.81064 -18.51955 -17.55981 -17.14833 -16.72570 -16.56030 -16.06024 -15.51293 -15.32479 -14.91302 -14.54229 -14.42992 -14.10532 -13.81808 -13.70709 -13.52731 -13.31218 -13.15071 -12.91292 -12.73262 -12.66913 -12.35480 -12.16112 -11.81498 -11.66627 -11.31454 -11.08172 -10.68475 -10.59696 -9.91759 -9.18845 -8.22497 -6.31376 -0.30886 0.32454 1.37893 1.39214 1.40896 1.49415 2.31554 2.38998 2.74036 3.03800 3.12625 3.48976 3.75169 3.88136 4.04425 4.16842 4.20606 4.26236 4.29983 4.39309 4.43196 4.55950 4.78777 4.80028 4.91334 5.01935 5.08320 5.09835 5.18147 5.22007 5.29310 5.37078 5.37659 5.47416 5.73068 5.75798 6.16612 6.53558 6.56884 6.80653 7.36542 8.89088 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.025542 B = 0.004786 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.953919 B = 5849.089704 C = 6277.206169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 H 0.074 0.926 4 C 0.027 3.973 5 C -0.532 4.532 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.278 1.278 12 H -0.266 1.266 13 O -0.312 6.312 14 C 0.167 3.833 15 C -0.191 4.191 16 C -0.014 4.014 17 C -0.272 4.272 18 C 0.003 3.997 19 C -0.226 4.226 20 C -0.080 4.080 21 C -0.160 4.160 22 C 0.409 3.591 23 O -0.498 6.498 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.055 0.945 27 H -0.001 1.001 28 H 0.029 0.971 29 H 0.264 0.736 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.739 11.837 13.165 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.010 4.010 5 C -0.570 4.570 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.203 1.203 11 H -0.203 1.203 12 H -0.190 1.190 13 O -0.224 6.224 14 C 0.119 3.881 15 C -0.209 4.209 16 C -0.032 4.032 17 C -0.273 4.273 18 C 0.002 3.998 19 C -0.245 4.245 20 C -0.117 4.117 21 C -0.197 4.197 22 C 0.291 3.709 23 O -0.378 6.378 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.074 0.926 27 H 0.017 0.983 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.471 11.448 13.509 18.853 hybrid contribution 1.044 -0.684 -0.631 1.398 sum -5.427 10.764 12.878 17.640 Atomic orbital electron populations 1.22328 0.93653 1.02971 1.03589 1.22728 0.94299 0.96388 0.83030 0.90841 1.19139 0.95434 0.95227 0.91182 1.21461 0.93314 1.34465 1.07781 0.93059 1.25809 1.03206 0.94852 0.95310 1.70049 1.37462 1.36723 1.12738 0.85577 0.80056 0.78759 0.77469 1.20322 1.20327 1.19033 1.86191 1.79727 1.39393 1.17136 1.19704 0.90767 0.90769 0.86834 1.20244 1.06615 1.02387 0.91667 1.20776 0.93242 0.92275 0.96908 1.21271 1.10962 0.96671 0.98422 1.20691 0.91158 0.96971 0.90975 1.20877 1.09604 0.93650 1.00360 1.20995 1.04518 0.90212 0.95928 1.22348 1.04276 0.96237 0.96811 1.22904 0.72954 0.90012 0.85001 1.90516 1.40971 1.83004 1.23261 0.90622 0.89670 0.92579 0.98294 0.95284 0.92667 0.84665 0.84201 0.83385 0.86345 0.86933 0.85468 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.09 9.17 71.98 0.66 -4.43 16 2 C 0.09 3.54 2.17 30.60 0.07 3.61 16 3 H 0.07 2.71 6.31 -2.39 -0.02 2.69 16 4 C 0.03 1.37 4.68 29.85 0.14 1.51 16 5 C -0.53 -29.81 8.88 25.60 0.23 -29.59 16 6 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 9 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 O -0.31 -12.79 9.54 -89.78 -0.86 -13.65 16 14 C 0.17 5.73 6.61 22.65 0.15 5.88 16 15 C -0.19 -6.05 9.91 22.04 0.22 -5.83 16 16 C -0.01 -0.39 10.05 22.41 0.23 -0.17 16 17 C -0.27 -7.17 6.12 -20.03 -0.12 -7.29 16 18 C 0.00 0.06 6.20 -19.50 -0.12 -0.06 16 19 C -0.23 -6.33 8.22 22.38 0.18 -6.15 16 20 C -0.08 -1.06 6.80 30.10 0.20 -0.86 16 21 C -0.16 -2.11 6.86 30.09 0.21 -1.91 16 22 C 0.41 9.77 7.77 28.10 0.22 9.99 16 23 O -0.50 -15.24 18.03 -3.10 -0.06 -15.30 16 24 H 0.07 1.90 6.89 -2.38 -0.02 1.88 16 25 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 28 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.14 4.16 8.06 -2.92 -0.02 4.13 16 31 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.15 3.73 5.40 -2.91 -0.02 3.71 16 33 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -69.47 306.52 5.20 -64.28 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.08 Total: 7.85 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 2.72 Total: -34.47 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.28 Total: -55.06 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.91 Total: -28.95 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -69.47 5.20 -64.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.774 kcal (2) G-P(sol) polarization free energy of solvation -69.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds