Wall clock time and date at job start Mon Mar 30 2020 06:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46780 * 2 1 4 4 C 1.50698 * 109.46784 * 240.00449 * 2 1 3 5 5 H 1.07998 * 119.99906 * 239.99611 * 4 2 1 6 6 C 1.37877 * 120.00381 * 60.00028 * 4 2 1 7 7 N 1.31512 * 119.99652 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99970 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47378 * 59.99982 * 8 6 4 10 10 H 1.48504 * 109.47049 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47068 * 299.99525 * 8 6 4 12 12 C 1.50698 * 109.47412 * 120.00147 * 2 1 3 13 13 O 1.20818 * 119.99943 * 119.99610 * 12 2 1 14 14 O 1.34230 * 119.99831 * 300.00302 * 12 2 1 15 15 C 1.45198 * 116.99823 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47327 * 179.97438 * 15 14 12 17 17 H 1.08998 * 112.88639 * 313.33533 * 16 15 14 18 18 C 1.52254 * 113.59224 * 182.16028 * 16 15 14 19 19 C 1.50559 * 87.23147 * 245.41041 * 18 16 15 20 20 C 1.38812 * 147.30314 * 180.43961 * 19 18 16 21 21 C 1.38064 * 120.09178 * 180.02562 * 20 19 18 22 22 C 1.38236 * 119.98044 * 359.43860 * 21 20 19 23 23 C 1.38066 * 119.98144 * 0.28681 * 22 21 20 24 24 C 1.37725 * 92.76959 * 0.02562 * 19 18 16 25 25 H 1.08996 * 109.46840 * 299.99949 * 1 2 3 26 26 H 1.08996 * 109.47118 * 59.99680 * 1 2 3 27 27 H 1.08994 * 109.46992 * 180.02562 * 1 2 3 28 28 H 0.97010 * 119.99391 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.47275 * 59.99308 * 15 14 12 30 30 H 1.09001 * 109.47161 * 299.99788 * 15 14 12 31 31 H 1.09009 * 113.58938 * 130.82265 * 18 16 15 32 32 H 1.08994 * 113.66380 * 0.02562 * 18 16 15 33 33 H 1.07995 * 119.95285 * 359.79221 * 20 19 18 34 34 H 1.08002 * 120.01225 * 179.72427 * 21 20 19 35 35 H 1.08002 * 120.00991 * 180.25877 * 22 21 20 36 36 H 1.07998 * 119.95560 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 1.8257 -2.5200 -4.0079 10 1 1.8259 -0.4204 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 6 2.0325 -0.7104 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7082 -0.2519 2.4496 15 6 2.2269 -0.9864 3.5896 16 6 1.7560 -0.3193 4.8833 17 1 1.8860 0.7629 4.8739 18 6 2.2915 -0.9863 6.1428 19 6 0.8685 -1.3607 6.4617 20 6 -0.0065 -1.9842 7.3406 21 6 -1.3598 -2.0097 7.0686 22 6 -1.8461 -1.4035 5.9254 23 6 -0.9775 -0.7781 5.0532 24 6 0.3841 -0.7579 5.3221 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.7081 1.1610 -3.4844 29 1 3.3165 -0.9862 3.5567 30 1 1.8627 -2.0132 3.5564 31 1 2.7285 -0.2863 6.8551 32 1 2.9344 -1.8438 5.9442 33 1 0.3724 -2.4533 8.2366 34 1 -2.0389 -2.4990 7.7511 35 1 -2.9052 -1.4195 5.7143 36 1 -1.3579 -0.3051 4.1600 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849853580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:23 Heat of formation + Delta-G solvation = -34.658469 kcal Electronic energy + Delta-G solvation = -18681.985354 eV Core-core repulsion = 15711.139117 eV Total energy + Delta-G solvation = -2970.846237 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.81660 -39.39214 -36.26721 -35.19854 -33.86802 -30.88529 -30.60917 -28.72921 -26.45614 -25.19230 -23.61824 -22.73117 -21.34977 -19.93977 -19.64185 -16.89912 -16.73798 -16.06647 -16.03127 -15.38101 -15.24063 -14.77186 -14.49181 -13.96803 -13.35278 -13.08849 -12.76881 -12.70068 -12.28462 -12.16714 -11.92856 -11.65608 -11.26053 -11.02773 -10.93010 -10.79158 -10.68777 -10.49477 -10.31101 -10.04688 -9.95789 -9.10031 -9.04521 -8.84662 -8.67306 -8.43665 -6.09613 -4.15024 1.26835 1.33720 3.31731 3.34212 3.35831 3.36885 3.48135 3.71503 4.09118 4.36125 4.41022 4.59201 4.94920 4.97545 5.06380 5.23344 5.24403 5.45674 5.47969 5.60946 5.63445 5.69403 5.81632 5.99756 6.06058 6.24851 6.33185 6.45952 6.67614 6.72192 6.88365 6.89489 6.94293 7.24357 7.45123 7.75171 7.95467 8.15430 8.86501 8.94834 9.50395 10.97745 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.004154 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.209706 B = 6738.191640 C = 7121.498395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.058 3.942 3 H 0.064 0.936 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.465 3.535 13 O -0.519 6.519 14 O -0.363 6.363 15 C 0.079 3.921 16 C -0.045 4.045 17 H 0.109 0.891 18 C -0.065 4.065 19 C -0.135 4.135 20 C -0.098 4.098 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.086 4.086 24 C -0.115 4.115 25 H 0.023 0.977 26 H 0.096 0.904 27 H 0.030 0.970 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 -1.725 18.197 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.406 6.406 14 O -0.282 6.282 15 C 0.004 3.996 16 C -0.063 4.063 17 H 0.127 0.873 18 C -0.102 4.102 19 C -0.135 4.135 20 C -0.117 4.117 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.104 4.104 24 C -0.115 4.115 25 H 0.042 0.958 26 H 0.114 0.886 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.536 -1.923 18.049 18.327 hybrid contribution 0.249 -0.598 -0.742 0.985 sum -2.287 -2.521 17.307 17.639 Atomic orbital electron populations 1.21721 0.95631 0.99991 1.01678 1.18752 0.94853 0.96960 0.85569 0.91828 1.21098 1.31953 1.13243 0.88821 0.90722 1.24932 0.94904 0.95016 0.99104 1.69875 1.36461 1.22821 1.23934 0.86434 0.79288 0.79678 0.81335 1.20102 1.21207 1.20079 1.25344 0.76523 0.83216 0.83948 1.90491 1.36461 1.26790 1.86815 1.86613 1.70501 1.55696 1.15348 1.22639 0.98590 0.95308 0.83065 1.21090 0.90325 1.01774 0.93125 0.87326 1.21452 0.92859 1.00455 0.95390 1.21841 0.96758 0.98742 0.96145 1.20367 0.92461 0.99864 0.98959 1.20966 0.94863 1.00318 0.97761 1.21015 0.99552 0.98479 0.94707 1.20595 0.91540 0.98774 0.99488 1.21772 0.94077 0.98864 0.96808 0.95809 0.88588 0.95057 0.92653 0.91062 0.91591 0.88622 0.88827 0.86575 0.85850 0.85676 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.90 37.16 0.33 -2.84 16 2 C 0.06 1.48 2.74 -92.92 -0.25 1.23 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.54 8.37 -34.44 -0.29 -14.82 16 5 H 0.07 2.20 6.76 -52.49 -0.35 1.85 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.46 11.10 7.25 36.00 0.26 11.36 16 13 O -0.52 -13.42 15.21 -18.74 -0.29 -13.71 16 14 O -0.36 -7.33 10.12 -39.26 -0.40 -7.73 16 15 C 0.08 1.27 5.18 37.16 0.19 1.46 16 16 C -0.05 -0.58 4.15 -92.52 -0.38 -0.97 16 17 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 18 C -0.06 -0.66 7.78 -28.62 -0.22 -0.89 16 19 C -0.13 -1.64 7.42 -104.96 -0.78 -2.42 16 20 C -0.10 -1.08 10.06 -39.43 -0.40 -1.47 16 21 C -0.12 -1.27 10.04 -39.65 -0.40 -1.66 16 22 C -0.12 -1.36 10.04 -39.65 -0.40 -1.76 16 23 C -0.09 -1.16 10.06 -39.43 -0.40 -1.56 16 24 C -0.12 -1.59 6.86 -104.96 -0.72 -2.31 16 25 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 26 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 30 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16 31 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.09 0.87 7.98 -51.93 -0.41 0.46 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -30.82 309.86 -8.82 -39.64 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.86 Total: -0.11 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -3.55 Total: -15.03 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.63 Total: -24.29 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.68 Total: -21.44 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.82 -8.82 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849853580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.978 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds