Wall clock time and date at job start Mon Mar 30 2020 06:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46780 * 2 1 4 4 C 1.50698 * 109.46784 * 240.00449 * 2 1 3 5 5 H 1.07998 * 119.99906 * 239.99611 * 4 2 1 6 6 C 1.37877 * 120.00381 * 60.00028 * 4 2 1 7 7 N 1.31512 * 119.99652 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99970 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47378 * 59.99982 * 8 6 4 10 10 H 1.48504 * 109.47049 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47068 * 299.99525 * 8 6 4 12 12 C 1.50698 * 109.47412 * 120.00147 * 2 1 3 13 13 O 1.20818 * 119.99943 * 119.99610 * 12 2 1 14 14 O 1.34230 * 119.99831 * 300.00302 * 12 2 1 15 15 C 1.45198 * 116.99823 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47327 * 179.97438 * 15 14 12 17 17 H 1.08998 * 112.88639 * 313.33533 * 16 15 14 18 18 C 1.52254 * 113.59224 * 182.16028 * 16 15 14 19 19 C 1.50559 * 87.23147 * 245.41041 * 18 16 15 20 20 C 1.38812 * 147.30314 * 180.43961 * 19 18 16 21 21 C 1.38064 * 120.09178 * 180.02562 * 20 19 18 22 22 C 1.38236 * 119.98044 * 359.43860 * 21 20 19 23 23 C 1.38066 * 119.98144 * 0.28681 * 22 21 20 24 24 C 1.37725 * 92.76959 * 0.02562 * 19 18 16 25 25 H 1.08996 * 109.46840 * 299.99949 * 1 2 3 26 26 H 1.08996 * 109.47118 * 59.99680 * 1 2 3 27 27 H 1.08994 * 109.46992 * 180.02562 * 1 2 3 28 28 H 0.97010 * 119.99391 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.47275 * 59.99308 * 15 14 12 30 30 H 1.09001 * 109.47161 * 299.99788 * 15 14 12 31 31 H 1.09009 * 113.58938 * 130.82265 * 18 16 15 32 32 H 1.08994 * 113.66380 * 0.02562 * 18 16 15 33 33 H 1.07995 * 119.95285 * 359.79221 * 20 19 18 34 34 H 1.08002 * 120.01225 * 179.72427 * 21 20 19 35 35 H 1.08002 * 120.00991 * 180.25877 * 22 21 20 36 36 H 1.07998 * 119.95560 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 1.8257 -2.5200 -4.0079 10 1 1.8259 -0.4204 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 6 2.0325 -0.7104 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7082 -0.2519 2.4496 15 6 2.2269 -0.9864 3.5896 16 6 1.7560 -0.3193 4.8833 17 1 1.8860 0.7629 4.8739 18 6 2.2915 -0.9863 6.1428 19 6 0.8685 -1.3607 6.4617 20 6 -0.0065 -1.9842 7.3406 21 6 -1.3598 -2.0097 7.0686 22 6 -1.8461 -1.4035 5.9254 23 6 -0.9775 -0.7781 5.0532 24 6 0.3841 -0.7579 5.3221 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.7081 1.1610 -3.4844 29 1 3.3165 -0.9862 3.5567 30 1 1.8627 -2.0132 3.5564 31 1 2.7285 -0.2863 6.8551 32 1 2.9344 -1.8438 5.9442 33 1 0.3724 -2.4533 8.2366 34 1 -2.0389 -2.4990 7.7511 35 1 -2.9052 -1.4195 5.7143 36 1 -1.3579 -0.3051 4.1600 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849853580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:23 Heat of formation + Delta-G solvation = -49.613079 kcal Electronic energy + Delta-G solvation = -18682.633835 eV Core-core repulsion = 15711.139117 eV Total energy + Delta-G solvation = -2971.494718 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.85256 -41.08506 -37.69122 -36.45880 -35.93566 -32.71909 -31.71726 -29.89907 -27.47139 -27.27640 -25.06314 -24.15231 -22.30866 -21.63677 -20.73731 -18.67057 -18.02697 -17.87377 -17.66897 -16.97981 -16.35748 -16.18840 -15.70889 -15.29095 -14.89644 -14.44778 -14.19288 -13.91555 -13.55484 -13.45606 -13.13906 -13.04078 -12.94296 -12.75081 -12.63000 -12.44785 -12.32434 -12.05380 -11.98727 -11.53720 -11.30287 -11.13596 -11.00556 -10.54156 -9.75077 -9.56348 -8.20821 -6.34415 0.37661 0.43757 1.41059 1.42445 1.44835 1.51993 1.86347 2.43295 2.81212 3.09145 3.16206 3.48064 3.59833 3.81940 4.10139 4.16825 4.22576 4.25640 4.41998 4.53318 4.66198 4.69078 4.75430 4.83332 4.88134 4.97312 4.97512 5.10862 5.18447 5.37060 5.47073 5.48017 5.58375 5.67623 5.80345 5.86534 6.08545 6.08881 6.71591 7.02991 7.34392 8.85525 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.004154 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.209706 B = 6738.191640 C = 7121.498395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.049 3.951 3 H 0.052 0.948 4 C -0.541 4.541 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.472 3.528 13 O -0.544 6.544 14 O -0.360 6.360 15 C 0.075 3.925 16 C -0.046 4.046 17 H 0.114 0.886 18 C -0.049 4.049 19 C -0.140 4.140 20 C -0.104 4.104 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.113 4.113 24 C -0.153 4.153 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.026 0.974 28 H 0.269 0.731 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 -2.265 19.751 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.030 3.970 3 H 0.070 0.930 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.198 1.198 12 C 0.318 3.682 13 O -0.434 6.434 14 O -0.278 6.278 15 C 0.002 3.998 16 C -0.064 4.064 17 H 0.132 0.868 18 C -0.086 4.086 19 C -0.140 4.140 20 C -0.122 4.122 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.131 4.131 24 C -0.153 4.153 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.123 0.877 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.162 0.838 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.582 -2.443 19.627 19.947 hybrid contribution 0.204 -0.418 -1.119 1.212 sum -2.378 -2.861 18.508 18.878 Atomic orbital electron populations 1.21541 0.94463 0.99707 1.01926 1.18684 0.95842 0.96224 0.86200 0.93005 1.21224 1.32796 1.13352 0.90525 0.92587 1.25645 0.94844 0.95640 1.01566 1.69956 1.36519 1.23378 1.24843 0.85518 0.78772 0.78626 0.78195 1.19957 1.19778 1.19821 1.24851 0.75969 0.82545 0.84831 1.90467 1.37602 1.27821 1.87470 1.86562 1.70199 1.55797 1.15197 1.22978 0.99211 0.94888 0.82757 1.21152 0.90783 1.02094 0.92362 0.86770 1.21465 0.92189 1.01022 0.93891 1.22150 0.97727 0.98413 0.95715 1.20764 0.92561 0.99270 0.99576 1.21386 0.95407 0.99314 0.97533 1.21305 1.00326 0.98055 0.94762 1.20763 0.92222 1.00110 1.00005 1.22010 0.94357 1.00611 0.98364 0.93461 0.90280 0.95494 0.92207 0.90046 0.92616 0.85827 0.87735 0.83888 0.82799 0.83831 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.90 71.98 0.64 -5.11 16 2 C 0.05 2.60 2.74 -12.28 -0.03 2.57 16 3 H 0.05 2.82 8.14 -2.39 -0.02 2.80 16 4 C -0.54 -31.28 8.37 25.60 0.21 -31.06 16 5 H 0.06 3.39 6.76 -2.91 -0.02 3.37 16 6 C 0.02 1.28 5.30 84.66 0.45 1.73 16 7 N -0.91 -50.89 11.32 21.45 0.24 -50.65 16 8 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.47 22.99 7.25 71.24 0.52 23.50 16 13 O -0.54 -28.74 15.21 21.99 0.33 -28.41 16 14 O -0.36 -14.67 10.12 -51.42 -0.52 -15.20 16 15 C 0.08 2.43 5.18 71.98 0.37 2.80 16 16 C -0.05 -1.15 4.15 -12.02 -0.05 -1.20 16 17 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 18 C -0.05 -0.89 7.78 29.37 0.23 -0.66 16 19 C -0.14 -3.12 7.42 -20.08 -0.15 -3.27 16 20 C -0.10 -1.98 10.06 22.37 0.22 -1.76 16 21 C -0.12 -2.17 10.04 22.23 0.22 -1.95 16 22 C -0.13 -2.74 10.04 22.23 0.22 -2.51 16 23 C -0.11 -3.06 10.06 22.37 0.22 -2.84 16 24 C -0.15 -4.15 6.86 -20.08 -0.14 -4.29 16 25 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16 26 H 0.08 4.11 6.07 -2.39 -0.01 4.09 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 29 H 0.08 2.44 8.13 -2.38 -0.02 2.42 16 30 H 0.06 1.91 8.03 -2.39 -0.02 1.89 16 31 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.10 1.68 7.98 -2.39 -0.02 1.66 16 33 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 35 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.11 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -66.47 309.86 6.10 -60.37 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.07 Total: 11.70 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 2.95 Total: -24.04 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.24 Total: -50.65 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.19 Total: -43.60 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -66.47 6.10 -60.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849853580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.756 kcal (2) G-P(sol) polarization free energy of solvation -66.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds