Wall clock time and date at job start Mon Mar 30 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47775 * 2 1 4 4 C 1.50702 * 109.47147 * 239.99600 * 2 1 3 5 5 H 1.07997 * 120.00454 * 240.00509 * 4 2 1 6 6 C 1.37874 * 119.99691 * 60.00275 * 4 2 1 7 7 N 1.31517 * 120.00091 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00145 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46993 * 59.99956 * 8 6 4 10 10 H 1.48500 * 109.46900 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46789 * 299.99947 * 8 6 4 12 12 C 1.50707 * 109.47253 * 120.00244 * 2 1 3 13 13 O 1.20821 * 120.00365 * 119.99816 * 12 2 1 14 14 O 1.34230 * 119.99552 * 299.99491 * 12 2 1 15 15 C 1.45200 * 116.99987 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47425 * 179.97438 * 15 14 12 17 17 H 1.09005 * 112.82790 * 46.61867 * 16 15 14 18 18 C 1.52255 * 113.83507 * 177.72482 * 16 15 14 19 19 C 1.50563 * 87.23622 * 114.45728 * 18 16 15 20 20 C 1.38805 * 147.30833 * 179.86689 * 19 18 16 21 21 C 1.38066 * 120.09057 * 180.34986 * 20 19 18 22 22 C 1.38230 * 119.98418 * 0.02562 * 21 20 19 23 23 C 1.38073 * 119.97909 * 359.97438 * 22 21 20 24 24 C 1.37724 * 92.76188 * 0.18453 * 19 18 16 25 25 H 1.09010 * 109.46724 * 300.00235 * 1 2 3 26 26 H 1.08998 * 109.47019 * 59.99775 * 1 2 3 27 27 H 1.08997 * 109.47538 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00003 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46476 * 60.00397 * 15 14 12 30 30 H 1.08995 * 109.47659 * 300.00610 * 15 14 12 31 31 H 1.09007 * 113.68827 * 359.85194 * 18 16 15 32 32 H 1.08992 * 113.48746 * 229.03292 * 18 16 15 33 33 H 1.07999 * 119.95359 * 0.36948 * 20 19 18 34 34 H 1.08000 * 120.00453 * 180.02562 * 21 20 19 35 35 H 1.07996 * 120.01427 * 179.97438 * 22 21 20 36 36 H 1.07996 * 119.95263 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8256 -2.5204 -4.0077 10 1 1.8258 -0.4207 -5.2204 11 1 3.8063 -1.1211 -4.0081 12 6 2.0323 -0.7105 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2268 -0.9863 3.5897 16 6 1.7559 -0.3190 4.8834 17 1 0.6927 -0.0789 4.8728 18 6 2.2001 -1.0438 6.1466 19 6 3.0332 0.1699 6.4626 20 6 3.9172 0.7840 7.3389 21 6 4.3908 2.0525 7.0686 22 6 3.9840 2.7124 5.9241 23 6 3.1047 2.1025 5.0517 24 6 2.6280 0.8272 5.3222 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7087 1.1612 -3.4844 29 1 3.3163 -0.9860 3.5568 30 1 1.8626 -2.0131 3.5567 31 1 2.7902 -1.9397 5.9529 32 1 1.3911 -1.2145 6.8567 33 1 4.2353 0.2689 8.2332 34 1 5.0789 2.5289 7.7512 35 1 4.3538 3.7048 5.7124 36 1 2.7875 2.6183 4.1575 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849853581.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:25 Heat of formation + Delta-G solvation = -34.657904 kcal Electronic energy + Delta-G solvation = -18629.210409 eV Core-core repulsion = 15658.364196 eV Total energy + Delta-G solvation = -2970.846213 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81787 -39.39300 -36.26682 -35.20008 -33.86856 -30.89226 -30.60578 -28.73227 -26.46259 -25.19258 -23.61968 -22.72927 -21.35481 -19.93064 -19.65100 -16.88672 -16.79641 -16.03494 -15.85321 -15.61362 -15.24906 -14.71712 -14.49210 -13.88994 -13.46133 -13.09555 -12.81955 -12.53779 -12.33410 -12.16051 -12.03658 -11.54643 -11.29058 -11.02206 -10.95837 -10.78773 -10.68789 -10.47961 -10.32468 -10.04843 -9.95433 -9.10077 -9.04536 -8.85087 -8.67717 -8.43638 -6.09581 -4.15058 1.26485 1.33303 3.32108 3.34523 3.35494 3.36457 3.47833 3.71105 4.08941 4.35781 4.41018 4.59345 4.94756 4.97211 5.06088 5.23445 5.24350 5.45475 5.48001 5.60675 5.63155 5.69251 5.81314 5.99906 6.05651 6.24717 6.32819 6.45509 6.67403 6.71779 6.88046 6.89412 6.93946 7.24320 7.45002 7.75152 7.95511 8.15389 8.86465 8.94825 9.50392 10.97777 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.034990 B = 0.004060 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.044310 B = 6894.213167 C = 7114.173425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 H 0.064 0.936 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.465 3.535 13 O -0.519 6.519 14 O -0.363 6.363 15 C 0.079 3.921 16 C -0.045 4.045 17 H 0.108 0.892 18 C -0.065 4.065 19 C -0.135 4.135 20 C -0.098 4.098 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.086 4.086 24 C -0.115 4.115 25 H 0.023 0.977 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 1.577 18.201 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.406 6.406 14 O -0.282 6.282 15 C 0.004 3.996 16 C -0.063 4.063 17 H 0.126 0.874 18 C -0.101 4.101 19 C -0.135 4.135 20 C -0.116 4.116 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.104 4.104 24 C -0.115 4.115 25 H 0.042 0.958 26 H 0.114 0.886 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.169 1.396 18.052 18.236 hybrid contribution 0.491 -0.425 -0.742 0.986 sum 2.660 0.971 17.310 17.540 Atomic orbital electron populations 1.21728 0.95605 1.00018 1.01718 1.18751 0.94863 0.96949 0.85564 0.91869 1.21098 1.31946 1.13246 0.88822 0.90718 1.24932 0.94898 0.95020 0.99103 1.69872 1.36475 1.22815 1.23939 0.86436 0.79293 0.79678 0.81339 1.20087 1.21206 1.20089 1.25348 0.76541 0.83195 0.83944 1.90492 1.36412 1.26836 1.86816 1.86613 1.70353 1.55846 1.15345 1.22625 0.98840 0.95049 0.83058 1.21086 1.00317 0.91807 0.93127 0.87359 1.21452 0.97798 0.95527 0.95360 1.21841 0.97725 0.97754 0.96159 1.20368 0.97347 0.94936 0.98988 1.20965 1.00442 0.94749 0.97752 1.21014 0.98000 1.00057 0.94677 1.20597 0.96615 0.93716 0.99515 1.21776 0.98438 0.94521 0.96805 0.95775 0.88584 0.95008 0.92650 0.91595 0.91056 0.88828 0.88606 0.86566 0.85845 0.85671 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.90 37.15 0.33 -2.83 16 2 C 0.06 1.48 2.74 -92.92 -0.25 1.23 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.25 16 4 C -0.51 -14.54 8.37 -34.44 -0.29 -14.83 16 5 H 0.07 2.20 6.76 -52.49 -0.35 1.85 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.47 11.10 7.25 36.01 0.26 11.36 16 13 O -0.52 -13.42 15.21 -18.75 -0.29 -13.71 16 14 O -0.36 -7.33 10.12 -39.26 -0.40 -7.73 16 15 C 0.08 1.28 5.20 37.16 0.19 1.47 16 16 C -0.05 -0.59 4.14 -92.51 -0.38 -0.97 16 17 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 18 C -0.06 -0.66 7.78 -28.62 -0.22 -0.89 16 19 C -0.13 -1.63 7.42 -104.96 -0.78 -2.41 16 20 C -0.10 -1.07 10.06 -39.43 -0.40 -1.47 16 21 C -0.12 -1.26 10.04 -39.65 -0.40 -1.66 16 22 C -0.12 -1.36 10.04 -39.64 -0.40 -1.76 16 23 C -0.09 -1.16 10.06 -39.43 -0.40 -1.56 16 24 C -0.12 -1.59 6.86 -104.96 -0.72 -2.31 16 25 H 0.02 0.50 8.11 -51.92 -0.42 0.08 16 26 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16 30 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 31 H 0.09 0.87 7.99 -51.92 -0.42 0.46 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 309.88 15.07 4.67 4.67 Total: -1.00 -30.82 309.88 -8.82 -39.63 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.86 Total: -0.13 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -3.55 Total: -15.00 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.63 Total: -24.30 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.68 Total: -21.44 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.82 -8.82 -39.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849853581.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.976 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds