Wall clock time and date at job start Mon Mar 30 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47775 * 2 1 4 4 C 1.50702 * 109.47147 * 239.99600 * 2 1 3 5 5 H 1.07997 * 120.00454 * 240.00509 * 4 2 1 6 6 C 1.37874 * 119.99691 * 60.00275 * 4 2 1 7 7 N 1.31517 * 120.00091 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00145 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46993 * 59.99956 * 8 6 4 10 10 H 1.48500 * 109.46900 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46789 * 299.99947 * 8 6 4 12 12 C 1.50707 * 109.47253 * 120.00244 * 2 1 3 13 13 O 1.20821 * 120.00365 * 119.99816 * 12 2 1 14 14 O 1.34230 * 119.99552 * 299.99491 * 12 2 1 15 15 C 1.45200 * 116.99987 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47425 * 179.97438 * 15 14 12 17 17 H 1.09005 * 112.82790 * 46.61867 * 16 15 14 18 18 C 1.52255 * 113.83507 * 177.72482 * 16 15 14 19 19 C 1.50563 * 87.23622 * 114.45728 * 18 16 15 20 20 C 1.38805 * 147.30833 * 179.86689 * 19 18 16 21 21 C 1.38066 * 120.09057 * 180.34986 * 20 19 18 22 22 C 1.38230 * 119.98418 * 0.02562 * 21 20 19 23 23 C 1.38073 * 119.97909 * 359.97438 * 22 21 20 24 24 C 1.37724 * 92.76188 * 0.18453 * 19 18 16 25 25 H 1.09010 * 109.46724 * 300.00235 * 1 2 3 26 26 H 1.08998 * 109.47019 * 59.99775 * 1 2 3 27 27 H 1.08997 * 109.47538 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00003 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46476 * 60.00397 * 15 14 12 30 30 H 1.08995 * 109.47659 * 300.00610 * 15 14 12 31 31 H 1.09007 * 113.68827 * 359.85194 * 18 16 15 32 32 H 1.08992 * 113.48746 * 229.03292 * 18 16 15 33 33 H 1.07999 * 119.95359 * 0.36948 * 20 19 18 34 34 H 1.08000 * 120.00453 * 180.02562 * 21 20 19 35 35 H 1.07996 * 120.01427 * 179.97438 * 22 21 20 36 36 H 1.07996 * 119.95263 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8256 -2.5204 -4.0077 10 1 1.8258 -0.4207 -5.2204 11 1 3.8063 -1.1211 -4.0081 12 6 2.0323 -0.7105 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2268 -0.9863 3.5897 16 6 1.7559 -0.3190 4.8834 17 1 0.6927 -0.0789 4.8728 18 6 2.2001 -1.0438 6.1466 19 6 3.0332 0.1699 6.4626 20 6 3.9172 0.7840 7.3389 21 6 4.3908 2.0525 7.0686 22 6 3.9840 2.7124 5.9241 23 6 3.1047 2.1025 5.0517 24 6 2.6280 0.8272 5.3222 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7087 1.1612 -3.4844 29 1 3.3163 -0.9860 3.5568 30 1 1.8626 -2.0131 3.5567 31 1 2.7902 -1.9397 5.9529 32 1 1.3911 -1.2145 6.8567 33 1 4.2353 0.2689 8.2332 34 1 5.0789 2.5289 7.7512 35 1 4.3538 3.7048 5.7124 36 1 2.7875 2.6183 4.1575 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849853581.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:25 Heat of formation + Delta-G solvation = -49.631938 kcal Electronic energy + Delta-G solvation = -18629.859732 eV Core-core repulsion = 15658.364196 eV Total energy + Delta-G solvation = -2971.495535 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.85359 -41.08727 -37.69126 -36.46123 -35.93365 -32.71716 -31.72127 -29.90296 -27.47946 -27.26726 -25.06127 -24.15000 -22.31517 -21.63271 -20.74280 -18.68272 -18.02830 -17.91433 -17.52763 -17.08412 -16.41949 -16.18361 -15.55879 -15.34757 -14.86399 -14.64393 -13.94411 -13.92133 -13.74761 -13.39620 -13.11920 -13.02208 -12.94320 -12.76999 -12.62368 -12.45386 -12.29834 -12.05276 -11.99856 -11.54476 -11.29192 -11.13406 -11.01005 -10.54070 -9.75678 -9.56831 -8.20779 -6.34513 0.37150 0.43145 1.41224 1.42183 1.44759 1.51915 1.86021 2.43224 2.80659 3.09120 3.15943 3.47681 3.59829 3.81711 4.10070 4.16351 4.22118 4.25295 4.42516 4.53187 4.67394 4.68575 4.75310 4.83029 4.89056 4.96930 4.98841 5.10871 5.18105 5.37642 5.47282 5.47612 5.57782 5.67945 5.79905 5.87650 6.08171 6.09227 6.71556 7.02924 7.34347 8.85529 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.034990 B = 0.004060 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.044310 B = 6894.213167 C = 7114.173425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.541 4.541 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.275 1.275 12 C 0.473 3.527 13 O -0.544 6.544 14 O -0.360 6.360 15 C 0.076 3.924 16 C -0.046 4.046 17 H 0.114 0.886 18 C -0.049 4.049 19 C -0.140 4.140 20 C -0.104 4.104 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.114 4.114 24 C -0.154 4.154 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.269 0.731 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 1.221 19.783 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.030 3.970 3 H 0.066 0.934 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.200 1.200 12 C 0.318 3.682 13 O -0.434 6.434 14 O -0.278 6.278 15 C 0.002 3.998 16 C -0.064 4.064 17 H 0.132 0.868 18 C -0.085 4.085 19 C -0.140 4.140 20 C -0.121 4.121 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.132 4.132 24 C -0.154 4.154 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.162 0.838 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.417 1.058 19.658 19.835 hybrid contribution 0.442 -0.239 -1.130 1.236 sum 2.859 0.819 18.529 18.766 Atomic orbital electron populations 1.21551 0.94195 0.99979 1.01995 1.18683 0.96064 0.96016 0.86197 0.93395 1.21226 1.32789 1.13356 0.90531 0.92582 1.25648 0.94840 0.95646 1.01570 1.69955 1.36541 1.23373 1.24842 0.85519 0.78681 0.78723 0.78193 1.19773 1.19777 1.19990 1.24854 0.75995 0.82513 0.84825 1.90468 1.37526 1.27895 1.87471 1.86562 1.69948 1.56049 1.15195 1.22963 0.98340 0.95749 0.82753 1.21149 1.00561 0.92316 0.92384 0.86781 1.21466 0.98272 0.94954 0.93827 1.22154 0.97898 0.98225 0.95707 1.20767 0.96596 0.95180 0.99605 1.21385 1.00109 0.94623 0.97510 1.21304 0.97435 1.00967 0.94745 1.20766 0.98111 0.94309 1.00018 1.22019 0.99866 0.95129 0.98380 0.93286 0.90374 0.95081 0.92209 0.92644 0.90016 0.87707 0.85795 0.83850 0.82776 0.83839 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.90 71.98 0.64 -5.08 16 2 C 0.05 2.60 2.74 -12.29 -0.03 2.57 16 3 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 4 C -0.54 -31.31 8.37 25.60 0.21 -31.09 16 5 H 0.06 3.39 6.76 -2.91 -0.02 3.37 16 6 C 0.02 1.28 5.30 84.65 0.45 1.73 16 7 N -0.91 -50.96 11.32 21.45 0.24 -50.72 16 8 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.47 23.00 7.25 71.24 0.52 23.52 16 13 O -0.54 -28.75 15.21 21.98 0.33 -28.42 16 14 O -0.36 -14.68 10.12 -51.41 -0.52 -15.20 16 15 C 0.08 2.44 5.20 71.98 0.37 2.81 16 16 C -0.05 -1.15 4.14 -12.02 -0.05 -1.20 16 17 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 18 C -0.05 -0.88 7.78 29.37 0.23 -0.65 16 19 C -0.14 -3.12 7.42 -20.08 -0.15 -3.27 16 20 C -0.10 -1.98 10.06 22.36 0.22 -1.75 16 21 C -0.12 -2.18 10.04 22.23 0.22 -1.95 16 22 C -0.13 -2.75 10.04 22.23 0.22 -2.53 16 23 C -0.11 -3.11 10.06 22.37 0.22 -2.88 16 24 C -0.15 -4.18 6.86 -20.09 -0.14 -4.32 16 25 H 0.05 2.04 8.11 -2.38 -0.02 2.02 16 26 H 0.08 4.03 6.07 -2.39 -0.01 4.02 16 27 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.06 1.90 8.03 -2.39 -0.02 1.88 16 30 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 31 H 0.10 1.67 7.99 -2.38 -0.02 1.65 16 32 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.11 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -66.61 309.88 6.10 -60.51 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.07 Total: 11.68 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 2.95 Total: -24.10 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.24 Total: -50.72 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -0.19 Total: -43.62 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.61 6.10 -60.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849853581.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.875 kcal (2) G-P(sol) polarization free energy of solvation -66.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds