Wall clock time and date at job start Mon Mar 30 2020 06:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 119.99565 * 2 1 4 4 C 1.50695 * 109.46958 * 124.99802 * 3 2 1 5 5 C 1.38160 * 120.03299 * 264.99702 * 4 3 2 6 6 C 1.38242 * 120.05974 * 180.02562 * 5 4 3 7 7 C 1.38287 * 120.11020 * 359.95665 * 6 5 4 8 8 C 1.38123 * 120.05512 * 0.02562 * 7 6 5 9 9 C 1.38717 * 120.02674 * 85.21960 * 4 3 2 10 10 O 1.35925 * 120.05420 * 0.02562 * 9 4 3 11 11 C 1.34260 * 117.00103 * 83.64653 * 10 9 4 12 12 O 1.20826 * 119.99924 * 5.75331 * 11 10 9 13 13 C 1.50697 * 120.00056 * 185.75102 * 11 10 9 14 14 H 1.08999 * 109.47701 * 60.00141 * 13 11 10 15 15 C 1.53004 * 109.47317 * 299.99600 * 13 11 10 16 16 C 1.50703 * 109.46976 * 180.02562 * 13 11 10 17 17 H 1.08001 * 120.00049 * 25.97148 * 16 13 11 18 18 C 1.37882 * 120.00110 * 205.96998 * 16 13 11 19 19 N 1.31510 * 120.00331 * 185.10029 * 18 16 13 20 20 Si 1.86803 * 119.99680 * 5.09590 * 18 16 13 21 21 H 1.48501 * 109.46985 * 94.51320 * 20 18 16 22 22 H 1.48500 * 109.47097 * 214.51038 * 20 18 16 23 23 H 1.48502 * 109.47226 * 334.51441 * 20 18 16 24 24 H 1.07999 * 120.00390 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99604 * 179.97438 * 1 2 3 26 26 H 1.07990 * 120.00378 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47262 * 5.00197 * 3 2 1 28 28 H 1.08997 * 109.46869 * 245.00118 * 3 2 1 29 29 H 1.08005 * 119.96928 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.94362 * 179.97438 * 6 5 4 31 31 H 1.08003 * 119.97029 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.02214 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.47351 * 185.00880 * 15 13 11 34 34 H 1.09001 * 109.47095 * 305.01078 * 15 13 11 35 35 H 1.08999 * 109.46596 * 65.00900 * 15 13 11 36 36 H 0.96998 * 119.99780 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0203 1.3328 1.1639 5 6 2.6459 1.9286 2.3528 6 6 3.5235 1.9547 3.4207 7 6 4.7775 1.3841 3.3022 8 6 5.1565 0.7869 2.1158 9 6 4.2796 0.7641 1.0409 10 8 4.6522 0.1818 -0.1295 11 6 5.1341 0.9907 -1.0865 12 8 5.3181 2.1616 -0.8516 13 6 5.4456 0.4384 -2.4535 14 1 4.5389 0.0223 -2.8926 15 6 6.5036 -0.6601 -2.3309 16 6 5.9694 1.5434 -3.3343 17 1 6.4580 2.3997 -2.8934 18 6 5.8247 1.4612 -4.7031 19 7 6.3689 2.3740 -5.4778 20 14 4.8559 0.0532 -5.4569 21 1 3.4517 0.4820 -5.6797 22 1 5.4682 -0.3301 -6.7544 23 1 4.8776 -1.1116 -4.5360 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 1.6671 2.3751 2.4478 30 1 3.2290 2.4213 4.3492 31 1 5.4612 1.4054 4.1381 32 1 6.1359 0.3410 2.0240 33 1 6.7937 -0.9977 -3.3258 34 1 7.3774 -0.2666 -1.8116 35 1 6.0932 -1.4984 -1.7680 36 1 6.2668 2.3163 -6.4407 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850748115.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:15 Heat of formation + Delta-G solvation = -41.263493 kcal Electronic energy + Delta-G solvation = -19311.956090 eV Core-core repulsion = 16340.823438 eV Total energy + Delta-G solvation = -2971.132652 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.86243 -38.54505 -36.11650 -35.10807 -33.90422 -31.48220 -31.16577 -30.01032 -26.46168 -25.32349 -24.11818 -22.27003 -21.55878 -19.93570 -19.63243 -17.57040 -17.01961 -16.28307 -15.98070 -15.94849 -14.90335 -14.56973 -14.19692 -14.00849 -13.64625 -13.26144 -13.11923 -12.67642 -12.37087 -12.31619 -11.90311 -11.70469 -11.47137 -11.37364 -11.16292 -11.12385 -10.76047 -10.53928 -10.26299 -9.89211 -9.48680 -9.31041 -9.27872 -8.76840 -8.69076 -8.43804 -6.19103 -4.21518 1.25067 1.39033 2.34226 3.02491 3.19829 3.27763 3.29549 3.36849 3.96455 4.28768 4.80206 4.87183 5.01602 5.09960 5.11890 5.22868 5.33174 5.42075 5.51515 5.68831 5.87537 5.97254 6.07192 6.10533 6.11089 6.37549 6.39082 6.47058 6.48442 6.55508 6.65007 6.73392 6.81182 6.89788 7.09788 7.27444 7.42358 8.33374 8.71720 8.95106 9.37883 10.93032 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.021771 B = 0.006508 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.828607 B = 4301.324708 C = 4971.841793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.058 4.058 4 C -0.084 4.084 5 C -0.104 4.104 6 C -0.125 4.125 7 C -0.111 4.111 8 C -0.122 4.122 9 C 0.101 3.899 10 O -0.309 6.309 11 C 0.464 3.536 12 O -0.483 6.483 13 C 0.029 3.971 14 H 0.066 0.934 15 C -0.136 4.136 16 C -0.513 4.513 17 H 0.090 0.910 18 C 0.078 3.922 19 N -0.887 5.887 20 Si 0.864 3.136 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.256 1.256 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 -5.772 14.246 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.151 4.151 3 C -0.095 4.095 4 C -0.085 4.085 5 C -0.122 4.122 6 C -0.143 4.143 7 C -0.130 4.130 8 C -0.141 4.141 9 C 0.060 3.940 10 O -0.227 6.227 11 C 0.308 3.692 12 O -0.365 6.365 13 C 0.009 3.991 14 H 0.084 0.916 15 C -0.194 4.194 16 C -0.550 4.550 17 H 0.108 0.892 18 C -0.125 4.125 19 N -0.523 5.523 20 Si 0.690 3.310 21 H -0.200 1.200 22 H -0.207 1.207 23 H -0.181 1.181 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.130 0.870 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.175 -5.306 14.112 17.150 hybrid contribution -0.439 -0.562 -0.476 0.857 sum -8.614 -5.868 13.635 17.163 Atomic orbital electron populations 1.23780 0.95660 1.01673 1.02690 1.22863 0.95747 0.98103 0.98408 1.19726 0.96881 0.96184 0.96730 1.19951 0.94349 0.97930 0.96226 1.20873 0.99767 0.99384 0.92154 1.21108 0.94160 1.00307 0.98729 1.20965 0.96627 0.98215 0.97149 1.21252 0.99337 1.00211 0.93289 1.18484 0.92537 0.97117 0.85888 1.84755 1.74889 1.41235 1.21794 1.25451 0.72332 0.85332 0.86132 1.90585 1.47585 1.18085 1.80235 1.19213 0.97497 0.97232 0.85145 0.91608 1.21990 0.99048 0.96834 1.01566 1.20781 1.38536 1.05462 0.90236 0.89176 1.24933 0.94981 0.95831 0.96736 1.69873 1.43292 1.34489 1.04663 0.87046 0.80909 0.83539 0.79475 1.19969 1.20741 1.18053 0.88687 0.88469 0.86960 0.90253 0.89722 0.85690 0.85843 0.85608 0.85374 0.92013 0.93093 0.94321 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.30 14.32 29.01 0.42 -1.89 16 2 C -0.13 -1.81 9.50 -36.03 -0.34 -2.16 16 3 C -0.06 -0.90 5.51 -29.04 -0.16 -1.06 16 4 C -0.08 -1.35 5.12 -104.48 -0.54 -1.88 16 5 C -0.10 -1.38 9.68 -39.61 -0.38 -1.77 16 6 C -0.13 -1.51 10.04 -39.56 -0.40 -1.90 16 7 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 8 C -0.12 -1.90 9.99 -39.44 -0.39 -2.29 16 9 C 0.10 1.80 4.92 -39.22 -0.19 1.61 16 10 O -0.31 -6.08 9.40 -23.61 -0.22 -6.30 16 11 C 0.46 10.56 5.90 36.00 0.21 10.77 16 12 O -0.48 -12.41 15.38 -18.75 -0.29 -12.69 16 13 C 0.03 0.68 2.27 -92.92 -0.21 0.46 16 14 H 0.07 1.49 5.66 -51.93 -0.29 1.20 16 15 C -0.14 -2.80 8.72 37.16 0.32 -2.48 16 16 C -0.51 -14.41 8.50 -34.44 -0.29 -14.70 16 17 H 0.09 2.87 7.37 -52.49 -0.39 2.48 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 20 Si 0.86 20.21 26.40 -169.99 -4.49 15.72 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.26 -5.52 6.03 56.52 0.34 -5.18 16 24 H 0.09 0.99 7.84 -52.49 -0.41 0.58 16 25 H 0.10 0.96 8.06 -52.48 -0.42 0.54 16 26 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.08 1.07 7.70 -51.93 -0.40 0.67 16 28 H 0.08 1.54 6.60 -51.93 -0.34 1.20 16 29 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.13 1.84 8.06 -52.48 -0.42 1.41 16 33 H 0.06 1.26 7.03 -51.93 -0.36 0.90 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 310.51 15.07 4.68 4.68 Total: -1.00 -31.43 310.51 -6.78 -38.20 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.78 Total: 3.19 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -2.45 Total: -17.00 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.77 Total: -25.80 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.51 Total: -18.99 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.49 Total: 15.72 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.43 -6.78 -38.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850748115.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.060 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds