Wall clock time and date at job start Mon Mar 30 2020 06:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 119.99565 * 2 1 4 4 C 1.50695 * 109.46958 * 124.99802 * 3 2 1 5 5 C 1.38160 * 120.03299 * 264.99702 * 4 3 2 6 6 C 1.38242 * 120.05974 * 180.02562 * 5 4 3 7 7 C 1.38287 * 120.11020 * 359.95665 * 6 5 4 8 8 C 1.38123 * 120.05512 * 0.02562 * 7 6 5 9 9 C 1.38717 * 120.02674 * 85.21960 * 4 3 2 10 10 O 1.35925 * 120.05420 * 0.02562 * 9 4 3 11 11 C 1.34260 * 117.00103 * 83.64653 * 10 9 4 12 12 O 1.20826 * 119.99924 * 5.75331 * 11 10 9 13 13 C 1.50697 * 120.00056 * 185.75102 * 11 10 9 14 14 H 1.08999 * 109.47701 * 60.00141 * 13 11 10 15 15 C 1.53004 * 109.47317 * 299.99600 * 13 11 10 16 16 C 1.50703 * 109.46976 * 180.02562 * 13 11 10 17 17 H 1.08001 * 120.00049 * 25.97148 * 16 13 11 18 18 C 1.37882 * 120.00110 * 205.96998 * 16 13 11 19 19 N 1.31510 * 120.00331 * 185.10029 * 18 16 13 20 20 Si 1.86803 * 119.99680 * 5.09590 * 18 16 13 21 21 H 1.48501 * 109.46985 * 94.51320 * 20 18 16 22 22 H 1.48500 * 109.47097 * 214.51038 * 20 18 16 23 23 H 1.48502 * 109.47226 * 334.51441 * 20 18 16 24 24 H 1.07999 * 120.00390 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99604 * 179.97438 * 1 2 3 26 26 H 1.07990 * 120.00378 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47262 * 5.00197 * 3 2 1 28 28 H 1.08997 * 109.46869 * 245.00118 * 3 2 1 29 29 H 1.08005 * 119.96928 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.94362 * 179.97438 * 6 5 4 31 31 H 1.08003 * 119.97029 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.02214 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.47351 * 185.00880 * 15 13 11 34 34 H 1.09001 * 109.47095 * 305.01078 * 15 13 11 35 35 H 1.08999 * 109.46596 * 65.00900 * 15 13 11 36 36 H 0.96998 * 119.99780 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0203 1.3328 1.1639 5 6 2.6459 1.9286 2.3528 6 6 3.5235 1.9547 3.4207 7 6 4.7775 1.3841 3.3022 8 6 5.1565 0.7869 2.1158 9 6 4.2796 0.7641 1.0409 10 8 4.6522 0.1818 -0.1295 11 6 5.1341 0.9907 -1.0865 12 8 5.3181 2.1616 -0.8516 13 6 5.4456 0.4384 -2.4535 14 1 4.5389 0.0223 -2.8926 15 6 6.5036 -0.6601 -2.3309 16 6 5.9694 1.5434 -3.3343 17 1 6.4580 2.3997 -2.8934 18 6 5.8247 1.4612 -4.7031 19 7 6.3689 2.3740 -5.4778 20 14 4.8559 0.0532 -5.4569 21 1 3.4517 0.4820 -5.6797 22 1 5.4682 -0.3301 -6.7544 23 1 4.8776 -1.1116 -4.5360 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 1.6671 2.3751 2.4478 30 1 3.2290 2.4213 4.3492 31 1 5.4612 1.4054 4.1381 32 1 6.1359 0.3410 2.0240 33 1 6.7937 -0.9977 -3.3258 34 1 7.3774 -0.2666 -1.8116 35 1 6.0932 -1.4984 -1.7680 36 1 6.2668 2.3163 -6.4407 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850748115.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:15 Heat of formation + Delta-G solvation = -58.696147 kcal Electronic energy + Delta-G solvation = -19312.712027 eV Core-core repulsion = 16340.823438 eV Total energy + Delta-G solvation = -2971.888589 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.36126 -39.88998 -37.72407 -36.14868 -35.88272 -33.50657 -32.20791 -31.19213 -27.58864 -27.31042 -25.71464 -23.57402 -22.81525 -21.47732 -20.71139 -19.34839 -18.72318 -17.94714 -17.57119 -17.08995 -16.35705 -15.88252 -15.72716 -15.41576 -14.86357 -14.64634 -14.46274 -14.33378 -14.14083 -13.51663 -13.23777 -13.09076 -12.95032 -12.83147 -12.67733 -12.51252 -12.34606 -12.10011 -11.73925 -11.61747 -11.36954 -11.23155 -10.81719 -10.31063 -9.86259 -9.62637 -8.35312 -6.45276 0.07020 0.30991 1.24089 1.36725 1.37021 1.38612 1.48668 1.93512 2.30381 2.77764 3.00731 3.72485 3.76401 3.95294 4.01884 4.13930 4.22034 4.28976 4.36891 4.46836 4.56766 4.61535 4.64074 4.78870 4.88403 4.98524 5.04767 5.06730 5.30691 5.39660 5.42048 5.43507 5.46190 5.51750 5.69096 5.82255 5.97901 6.18072 6.64261 7.00608 7.19379 8.81424 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.021771 B = 0.006508 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.828607 B = 4301.324708 C = 4971.841793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.160 4.160 3 C -0.057 4.057 4 C -0.099 4.099 5 C -0.109 4.109 6 C -0.112 4.112 7 C -0.110 4.110 8 C -0.138 4.138 9 C 0.051 3.949 10 O -0.299 6.299 11 C 0.471 3.529 12 O -0.525 6.525 13 C 0.024 3.976 14 H 0.081 0.919 15 C -0.131 4.131 16 C -0.524 4.524 17 H 0.032 0.968 18 C 0.020 3.980 19 N -0.940 5.940 20 Si 0.935 3.065 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.222 1.222 24 H 0.108 0.892 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.045 0.955 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.130 0.870 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.551 -7.660 16.263 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C -0.094 4.094 4 C -0.099 4.099 5 C -0.126 4.126 6 C -0.129 4.129 7 C -0.128 4.128 8 C -0.156 4.156 9 C 0.010 3.990 10 O -0.215 6.215 11 C 0.317 3.683 12 O -0.411 6.411 13 C 0.004 3.996 14 H 0.098 0.902 15 C -0.189 4.189 16 C -0.562 4.562 17 H 0.050 0.950 18 C -0.178 4.178 19 N -0.578 5.578 20 Si 0.756 3.244 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.144 1.144 24 H 0.126 0.874 25 H 0.135 0.865 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.171 0.829 30 H 0.183 0.817 31 H 0.178 0.822 32 H 0.148 0.852 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.436 -7.228 16.166 20.555 hybrid contribution 0.221 0.140 -0.908 0.944 sum -10.216 -7.089 15.258 19.683 Atomic orbital electron populations 1.24040 0.94775 1.03248 0.99011 1.22718 0.96495 0.96845 1.01763 1.19699 0.96904 0.97958 0.94865 1.20206 0.93923 0.98159 0.97634 1.21272 1.01355 0.98601 0.91414 1.21644 0.93195 0.98378 0.99693 1.21405 0.97672 0.96811 0.96906 1.21493 0.99291 1.00854 0.93996 1.18925 0.94293 1.00410 0.85384 1.84684 1.74143 1.40316 1.22349 1.25148 0.71632 0.84761 0.86758 1.90553 1.49559 1.19840 1.81186 1.19172 0.98735 0.96527 0.85140 0.90169 1.21901 0.97921 0.96664 1.02370 1.20816 1.38658 1.05273 0.91426 0.95005 1.25902 0.95850 0.99131 0.96923 1.70034 1.45274 1.37295 1.05232 0.85926 0.78875 0.80561 0.79035 1.19394 1.20084 1.14385 0.87365 0.86484 0.87796 0.88721 0.93684 0.82918 0.81728 0.82193 0.85225 0.91635 0.93648 0.90836 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 14.32 67.77 0.97 -2.54 16 2 C -0.16 -4.19 9.50 25.64 0.24 -3.94 16 3 C -0.06 -1.77 5.51 29.10 0.16 -1.61 16 4 C -0.10 -3.13 5.12 -19.77 -0.10 -3.23 16 5 C -0.11 -2.62 9.68 22.25 0.22 -2.41 16 6 C -0.11 -2.28 10.04 22.28 0.22 -2.05 16 7 C -0.11 -2.51 10.04 22.25 0.22 -2.29 16 8 C -0.14 -4.21 9.99 22.36 0.22 -3.98 16 9 C 0.05 1.82 4.92 22.51 0.11 1.93 16 10 O -0.30 -11.99 9.40 4.57 0.04 -11.95 16 11 C 0.47 22.30 5.90 71.23 0.42 22.72 16 12 O -0.53 -28.71 15.38 21.96 0.34 -28.37 16 13 C 0.02 1.13 2.27 -12.28 -0.03 1.10 16 14 H 0.08 3.58 5.66 -2.39 -0.01 3.56 16 15 C -0.13 -5.25 8.72 71.98 0.63 -4.63 16 16 C -0.52 -30.92 8.50 25.60 0.22 -30.71 16 17 H 0.03 2.19 7.37 -2.91 -0.02 2.17 16 18 C 0.02 1.18 5.47 84.66 0.46 1.64 16 19 N -0.94 -58.75 13.96 21.45 0.30 -58.45 16 20 Si 0.94 41.51 26.40 68.60 1.81 43.32 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.22 -8.54 6.03 99.48 0.60 -7.94 16 24 H 0.11 1.89 7.84 -2.91 -0.02 1.87 16 25 H 0.12 1.90 8.06 -2.91 -0.02 1.88 16 26 H 0.10 2.83 8.06 -2.92 -0.02 2.81 16 27 H 0.09 2.48 7.70 -2.39 -0.02 2.46 16 28 H 0.04 1.72 6.60 -2.39 -0.02 1.70 16 29 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 30 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.06 2.56 7.03 -2.39 -0.02 2.55 16 34 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -73.97 310.51 7.42 -66.56 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.96 Total: 18.87 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 3.97 Total: -29.98 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.30 Total: -58.45 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: 0.38 Total: -40.32 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.81 Total: 43.32 kcal Total: -73.97 7.42 -66.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850748115.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.859 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds