Wall clock time and date at job start Mon Mar 30 2020 06:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00697 * 2 1 4 4 C 1.50697 * 109.47427 * 124.99707 * 3 2 1 5 5 C 1.38159 * 120.02518 * 265.00038 * 4 3 2 6 6 C 1.38248 * 120.05278 * 180.27844 * 5 4 3 7 7 C 1.38285 * 120.11135 * 359.48502 * 6 5 4 8 8 C 1.38118 * 120.05794 * 0.51796 * 7 6 5 9 9 C 1.38712 * 120.02766 * 85.02153 * 4 3 2 10 10 O 1.35919 * 120.05306 * 359.95813 * 9 4 3 11 11 C 1.34265 * 117.00155 * 84.88304 * 10 9 4 12 12 O 1.20821 * 120.00022 * 5.76482 * 11 10 9 13 13 C 1.50703 * 119.99882 * 185.76602 * 11 10 9 14 14 H 1.08996 * 109.47219 * 299.99585 * 13 11 10 15 15 C 1.53004 * 109.46962 * 60.00000 * 13 11 10 16 16 C 1.50704 * 109.47117 * 179.97438 * 13 11 10 17 17 H 1.07998 * 119.99832 * 359.97438 * 16 13 11 18 18 C 1.37873 * 119.99900 * 180.02562 * 16 13 11 19 19 N 1.31512 * 120.00209 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99761 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47111 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46963 * 119.99662 * 20 18 16 23 23 H 1.48498 * 109.47010 * 239.99807 * 20 18 16 24 24 H 1.07994 * 120.00175 * 180.02562 * 1 2 3 25 25 H 1.08008 * 119.99139 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99336 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46798 * 4.99718 * 3 2 1 28 28 H 1.09004 * 109.46836 * 245.00114 * 3 2 1 29 29 H 1.07995 * 119.97825 * 0.02562 * 5 4 3 30 30 H 1.08000 * 119.94707 * 179.72639 * 6 5 4 31 31 H 1.08001 * 119.97320 * 180.25201 * 7 6 5 32 32 H 1.07999 * 120.03470 * 179.71870 * 8 7 6 33 33 H 1.08997 * 109.46692 * 180.02562 * 15 13 11 34 34 H 1.09001 * 109.46864 * 299.99716 * 15 13 11 35 35 H 1.08997 * 109.47315 * 60.00271 * 15 13 11 36 36 H 0.97003 * 119.99797 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 6 3.0206 1.3326 1.1639 5 6 2.6461 1.9285 2.3528 6 6 3.5256 1.9591 3.4190 7 6 4.7779 1.3844 3.3020 8 6 5.1571 0.7875 2.1156 9 6 4.2782 0.7600 1.0422 10 8 4.6486 0.1729 -0.1263 11 6 5.1562 0.9738 -1.0769 12 8 5.3631 2.1397 -0.8373 13 6 5.4676 0.4183 -2.4428 14 1 6.2035 -0.3804 -2.3510 15 6 4.1879 -0.1368 -3.0715 16 6 6.0215 1.5143 -3.3164 17 1 6.1360 2.5132 -2.9221 18 6 6.3809 1.2420 -4.6193 19 7 6.2409 0.0257 -5.0996 20 14 7.0668 2.6007 -5.7024 21 1 7.1232 3.8681 -4.9305 22 1 8.4336 2.2330 -6.1518 23 1 6.1883 2.7812 -6.8859 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5399 0.9355 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3588 2.1316 0.0895 28 1 2.6215 1.4024 -0.9314 29 1 1.6671 2.3743 2.4480 30 1 3.2327 2.4293 4.3461 31 1 5.4617 1.4061 4.1377 32 1 6.1369 0.3428 2.0232 33 1 4.4134 -0.5389 -4.0592 34 1 3.7870 -0.9294 -2.4397 35 1 3.4521 0.6621 -3.1633 36 1 6.4942 -0.1659 -6.0161 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850748117.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:17 Heat of formation + Delta-G solvation = -44.480809 kcal Electronic energy + Delta-G solvation = -19323.128433 eV Core-core repulsion = 16351.856267 eV Total energy + Delta-G solvation = -2971.272166 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78508 -38.47549 -36.04141 -35.05486 -33.94718 -31.12230 -30.85332 -29.83849 -26.37676 -25.25203 -24.01005 -22.19081 -21.55637 -20.00951 -19.59314 -17.41895 -16.33127 -16.26154 -16.10188 -15.72660 -14.84811 -14.58524 -14.17755 -14.02776 -13.50418 -13.23372 -12.98231 -12.69277 -12.26611 -11.88646 -11.77460 -11.51978 -11.30573 -11.09031 -11.06680 -10.83448 -10.74515 -10.42771 -10.19058 -10.09714 -9.38519 -9.24131 -9.09631 -8.72965 -8.51637 -8.37642 -6.15187 -4.21103 1.29906 1.42738 2.41171 3.14453 3.26554 3.33876 3.38800 3.49148 4.02424 4.38987 4.84790 4.91836 5.06323 5.15230 5.18363 5.27738 5.38757 5.50229 5.55777 5.73843 5.93308 6.04546 6.12583 6.26846 6.44272 6.51935 6.58970 6.61188 6.71843 6.79316 6.80574 6.87474 6.96209 7.33765 7.36553 7.68898 7.90345 8.08064 8.80124 8.88974 9.45010 10.92134 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.005893 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.810712 B = 4750.339978 C = 5391.195575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.058 4.058 4 C -0.084 4.084 5 C -0.105 4.105 6 C -0.126 4.126 7 C -0.112 4.112 8 C -0.124 4.124 9 C 0.103 3.897 10 O -0.307 6.307 11 C 0.463 3.537 12 O -0.498 6.498 13 C 0.060 3.940 14 H 0.066 0.934 15 C -0.134 4.134 16 C -0.514 4.514 17 H 0.076 0.924 18 C 0.063 3.937 19 N -0.891 5.891 20 Si 0.904 3.096 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.024 0.976 35 H 0.032 0.968 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.851 -0.430 12.751 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.147 4.147 3 C -0.095 4.095 4 C -0.084 4.084 5 C -0.123 4.123 6 C -0.144 4.144 7 C -0.130 4.130 8 C -0.142 4.142 9 C 0.061 3.939 10 O -0.224 6.224 11 C 0.309 3.691 12 O -0.382 6.382 13 C 0.041 3.959 14 H 0.084 0.916 15 C -0.192 4.192 16 C -0.552 4.552 17 H 0.094 0.906 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.731 3.269 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.131 0.869 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.116 0.884 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.737 -0.145 12.659 14.837 hybrid contribution 0.447 0.679 -0.510 0.959 sum -7.290 0.533 12.149 14.178 Atomic orbital electron populations 1.23756 0.95660 1.01584 1.03028 1.22851 0.95690 0.98121 0.98080 1.19726 0.96799 0.96122 0.96814 1.19958 0.94421 0.97860 0.96209 1.20870 0.99690 0.99527 0.92204 1.21096 0.94193 1.00395 0.98733 1.20955 0.96656 0.98275 0.97122 1.21276 0.99359 1.00234 0.93333 1.18510 0.92548 0.96774 0.86072 1.84776 1.74207 1.41378 1.22076 1.25846 0.71665 0.85194 0.86432 1.90535 1.48727 1.18634 1.80314 1.18817 0.96834 0.98353 0.81852 0.91642 1.21759 0.95584 0.98274 1.03543 1.21159 1.42230 0.95902 0.95879 0.90556 1.24926 0.95317 0.95961 0.97677 1.69883 1.47728 1.19191 1.16103 0.86325 0.78557 0.81962 0.80019 1.19490 1.20822 1.20819 0.88487 0.88803 0.86927 0.90470 0.89538 0.85742 0.85901 0.85664 0.85406 0.88372 0.95665 0.94911 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.41 14.32 29.01 0.42 -2.00 16 2 C -0.13 -1.83 9.50 -36.03 -0.34 -2.17 16 3 C -0.06 -0.91 5.51 -29.04 -0.16 -1.07 16 4 C -0.08 -1.38 5.13 -104.48 -0.54 -1.92 16 5 C -0.10 -1.43 9.68 -39.61 -0.38 -1.81 16 6 C -0.13 -1.56 10.04 -39.56 -0.40 -1.96 16 7 C -0.11 -1.47 10.04 -39.61 -0.40 -1.87 16 8 C -0.12 -1.99 9.99 -39.43 -0.39 -2.38 16 9 C 0.10 1.88 4.91 -39.21 -0.19 1.69 16 10 O -0.31 -6.34 9.35 -23.60 -0.22 -6.56 16 11 C 0.46 10.92 5.99 36.01 0.22 11.13 16 12 O -0.50 -12.86 15.21 -18.74 -0.29 -13.14 16 13 C 0.06 1.52 2.74 -92.92 -0.25 1.26 16 14 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 15 C -0.13 -3.11 8.90 37.16 0.33 -2.78 16 16 C -0.51 -14.27 8.37 -34.44 -0.29 -14.56 16 17 H 0.08 2.22 6.76 -52.49 -0.35 1.87 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -24.46 11.32 55.43 0.63 -23.84 16 20 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 25 H 0.09 1.00 7.84 -52.48 -0.41 0.59 16 26 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 27 H 0.08 1.05 7.70 -51.93 -0.40 0.65 16 28 H 0.09 1.61 6.68 -51.93 -0.35 1.27 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 34 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 313.26 15.07 4.72 4.72 Total: -1.00 -29.71 313.26 -7.42 -37.13 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.77 Total: 2.21 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -2.48 Total: -16.81 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.63 Total: -23.84 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.51 Total: -19.70 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.71 -7.42 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850748117.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.351 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds