Wall clock time and date at job start Mon Mar 30 2020 06:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00697 * 2 1 4 4 C 1.50697 * 109.47427 * 124.99707 * 3 2 1 5 5 C 1.38159 * 120.02518 * 265.00038 * 4 3 2 6 6 C 1.38248 * 120.05278 * 180.27844 * 5 4 3 7 7 C 1.38285 * 120.11135 * 359.48502 * 6 5 4 8 8 C 1.38118 * 120.05794 * 0.51796 * 7 6 5 9 9 C 1.38712 * 120.02766 * 85.02153 * 4 3 2 10 10 O 1.35919 * 120.05306 * 359.95813 * 9 4 3 11 11 C 1.34265 * 117.00155 * 84.88304 * 10 9 4 12 12 O 1.20821 * 120.00022 * 5.76482 * 11 10 9 13 13 C 1.50703 * 119.99882 * 185.76602 * 11 10 9 14 14 H 1.08996 * 109.47219 * 299.99585 * 13 11 10 15 15 C 1.53004 * 109.46962 * 60.00000 * 13 11 10 16 16 C 1.50704 * 109.47117 * 179.97438 * 13 11 10 17 17 H 1.07998 * 119.99832 * 359.97438 * 16 13 11 18 18 C 1.37873 * 119.99900 * 180.02562 * 16 13 11 19 19 N 1.31512 * 120.00209 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99761 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47111 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46963 * 119.99662 * 20 18 16 23 23 H 1.48498 * 109.47010 * 239.99807 * 20 18 16 24 24 H 1.07994 * 120.00175 * 180.02562 * 1 2 3 25 25 H 1.08008 * 119.99139 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99336 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46798 * 4.99718 * 3 2 1 28 28 H 1.09004 * 109.46836 * 245.00114 * 3 2 1 29 29 H 1.07995 * 119.97825 * 0.02562 * 5 4 3 30 30 H 1.08000 * 119.94707 * 179.72639 * 6 5 4 31 31 H 1.08001 * 119.97320 * 180.25201 * 7 6 5 32 32 H 1.07999 * 120.03470 * 179.71870 * 8 7 6 33 33 H 1.08997 * 109.46692 * 180.02562 * 15 13 11 34 34 H 1.09001 * 109.46864 * 299.99716 * 15 13 11 35 35 H 1.08997 * 109.47315 * 60.00271 * 15 13 11 36 36 H 0.97003 * 119.99797 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 6 3.0206 1.3326 1.1639 5 6 2.6461 1.9285 2.3528 6 6 3.5256 1.9591 3.4190 7 6 4.7779 1.3844 3.3020 8 6 5.1571 0.7875 2.1156 9 6 4.2782 0.7600 1.0422 10 8 4.6486 0.1729 -0.1263 11 6 5.1562 0.9738 -1.0769 12 8 5.3631 2.1397 -0.8373 13 6 5.4676 0.4183 -2.4428 14 1 6.2035 -0.3804 -2.3510 15 6 4.1879 -0.1368 -3.0715 16 6 6.0215 1.5143 -3.3164 17 1 6.1360 2.5132 -2.9221 18 6 6.3809 1.2420 -4.6193 19 7 6.2409 0.0257 -5.0996 20 14 7.0668 2.6007 -5.7024 21 1 7.1232 3.8681 -4.9305 22 1 8.4336 2.2330 -6.1518 23 1 6.1883 2.7812 -6.8859 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5399 0.9355 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3588 2.1316 0.0895 28 1 2.6215 1.4024 -0.9314 29 1 1.6671 2.3743 2.4480 30 1 3.2327 2.4293 4.3461 31 1 5.4617 1.4061 4.1377 32 1 6.1369 0.3428 2.0232 33 1 4.4134 -0.5389 -4.0592 34 1 3.7870 -0.9294 -2.4397 35 1 3.4521 0.6621 -3.1633 36 1 6.4942 -0.1659 -6.0161 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850748117.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:17 Heat of formation + Delta-G solvation = -58.676820 kcal Electronic energy + Delta-G solvation = -19323.744018 eV Core-core repulsion = 16351.856267 eV Total energy + Delta-G solvation = -2971.887751 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.33594 -39.86093 -37.70565 -36.15246 -35.96877 -32.81027 -32.20090 -31.12123 -27.57585 -27.27471 -25.68931 -23.56120 -22.86893 -21.58814 -20.69864 -19.02233 -18.27496 -17.95585 -17.63162 -17.02641 -16.42083 -15.93657 -15.66399 -15.41890 -14.76114 -14.66943 -14.46867 -14.28801 -13.71932 -13.38573 -13.08833 -12.96300 -12.88957 -12.74437 -12.68302 -12.50204 -12.33661 -12.10000 -12.08302 -11.58760 -11.24601 -11.15804 -10.58293 -10.28817 -9.85965 -9.61917 -8.23790 -6.37762 0.08590 0.31270 1.29552 1.39320 1.39909 1.40954 1.54017 1.99293 2.41538 2.79865 3.06146 3.74120 3.78341 4.01993 4.04082 4.15011 4.23058 4.38304 4.47400 4.60473 4.65623 4.70327 4.80112 4.85684 4.97758 5.00462 5.07045 5.31143 5.36184 5.43344 5.46596 5.50469 5.64834 5.71042 5.81694 5.84544 5.98671 6.06622 6.68714 7.04847 7.31543 8.82924 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.005893 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.810712 B = 4750.339978 C = 5391.195575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.159 4.159 3 C -0.055 4.055 4 C -0.098 4.098 5 C -0.107 4.107 6 C -0.111 4.111 7 C -0.109 4.109 8 C -0.141 4.141 9 C 0.050 3.950 10 O -0.304 6.304 11 C 0.473 3.527 12 O -0.528 6.528 13 C 0.054 3.946 14 H 0.051 0.949 15 C -0.117 4.117 16 C -0.539 4.539 17 H 0.055 0.945 18 C 0.025 3.975 19 N -0.907 5.907 20 Si 0.964 3.036 21 H -0.277 1.277 22 H -0.272 1.272 23 H -0.271 1.271 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.155 0.845 30 H 0.167 0.833 31 H 0.160 0.840 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.029 0.971 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 0.356 14.441 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.177 4.177 3 C -0.092 4.092 4 C -0.098 4.098 5 C -0.125 4.125 6 C -0.129 4.129 7 C -0.127 4.127 8 C -0.160 4.160 9 C 0.010 3.990 10 O -0.220 6.220 11 C 0.319 3.681 12 O -0.415 6.415 13 C 0.035 3.965 14 H 0.069 0.931 15 C -0.175 4.175 16 C -0.577 4.577 17 H 0.073 0.927 18 C -0.175 4.175 19 N -0.546 5.546 20 Si 0.789 3.211 21 H -0.202 1.202 22 H -0.197 1.197 23 H -0.196 1.196 24 H 0.133 0.867 25 H 0.129 0.871 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.173 0.827 30 H 0.184 0.816 31 H 0.178 0.822 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.198 0.605 14.359 17.063 hybrid contribution 0.811 0.413 -0.878 1.264 sum -8.387 1.017 13.480 15.909 Atomic orbital electron populations 1.24020 0.94687 1.03239 0.99135 1.22687 0.96505 0.96835 1.01653 1.19685 0.96828 0.97780 0.94909 1.20209 0.93826 0.98053 0.97728 1.21286 1.01338 0.98586 0.91314 1.21648 0.93106 0.98368 0.99744 1.21391 0.97788 0.96798 0.96728 1.21498 0.99226 1.01061 0.94186 1.18975 0.94476 1.00175 0.85416 1.84708 1.73540 1.40818 1.22893 1.25331 0.71301 0.84731 0.86687 1.90490 1.50221 1.19774 1.81035 1.18718 0.97196 0.97401 0.83194 0.93138 1.21548 0.94673 0.98552 1.02706 1.21233 1.43780 0.95659 0.97045 0.92695 1.25629 0.95245 0.98159 0.98510 1.69960 1.47593 1.20367 1.16634 0.85411 0.78452 0.78912 0.78341 1.20232 1.19702 1.19571 0.86693 0.87104 0.88411 0.88516 0.93562 0.82713 0.81580 0.82196 0.85616 0.90083 0.93571 0.95172 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 14.32 67.78 0.97 -2.75 16 2 C -0.16 -4.42 9.50 25.65 0.24 -4.17 16 3 C -0.06 -1.74 5.51 29.10 0.16 -1.58 16 4 C -0.10 -3.18 5.13 -19.77 -0.10 -3.28 16 5 C -0.11 -2.63 9.68 22.25 0.22 -2.42 16 6 C -0.11 -2.31 10.04 22.28 0.22 -2.09 16 7 C -0.11 -2.59 10.04 22.25 0.22 -2.36 16 8 C -0.14 -4.54 9.99 22.37 0.22 -4.32 16 9 C 0.05 1.90 4.91 22.51 0.11 2.01 16 10 O -0.30 -13.19 9.35 4.59 0.04 -13.15 16 11 C 0.47 23.50 5.99 71.24 0.43 23.92 16 12 O -0.53 -28.68 15.21 21.98 0.33 -28.34 16 13 C 0.05 2.85 2.74 -12.28 -0.03 2.81 16 14 H 0.05 2.78 8.14 -2.39 -0.02 2.76 16 15 C -0.12 -5.64 8.90 71.98 0.64 -5.00 16 16 C -0.54 -31.17 8.37 25.60 0.21 -30.96 16 17 H 0.05 3.35 6.76 -2.91 -0.02 3.33 16 18 C 0.02 1.37 5.30 84.65 0.45 1.82 16 19 N -0.91 -50.53 11.32 21.45 0.24 -50.29 16 20 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H 0.11 2.04 8.06 -2.91 -0.02 2.02 16 25 H 0.11 2.00 7.84 -2.91 -0.02 1.98 16 26 H 0.10 2.95 8.06 -2.91 -0.02 2.93 16 27 H 0.10 2.54 7.70 -2.39 -0.02 2.52 16 28 H 0.05 1.82 6.68 -2.39 -0.02 1.80 16 29 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 33 H 0.08 4.18 6.07 -2.39 -0.01 4.17 16 34 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16 35 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -66.84 313.26 7.67 -59.17 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 1.06 Total: 14.82 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 3.97 Total: -28.36 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.24 Total: -50.29 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: 0.38 Total: -41.49 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -66.84 7.67 -59.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850748117.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.489 kcal (2) G-P(sol) polarization free energy of solvation -66.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds