Wall clock time and date at job start Mon Mar 30 2020 06:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47183 * 2 1 4 4 C 1.50693 * 109.47046 * 120.00332 * 2 1 3 5 5 H 1.08001 * 119.99871 * 119.99584 * 4 2 1 6 6 C 1.37873 * 120.00230 * 300.00025 * 4 2 1 7 7 N 1.31513 * 119.99819 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00342 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46619 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47069 * 119.99534 * 8 6 4 11 11 H 1.48491 * 109.46992 * 239.99687 * 8 6 4 12 12 C 1.50700 * 109.46749 * 240.00639 * 2 1 3 13 13 O 1.21286 * 119.99424 * 240.00289 * 12 2 1 14 14 N 1.34772 * 120.00695 * 59.99541 * 12 2 1 15 15 C 1.39400 * 120.00504 * 185.08693 * 14 12 2 16 16 C 1.39041 * 119.69787 * 174.93991 * 15 14 12 17 17 C 1.38362 * 119.10009 * 180.02562 * 16 15 14 18 18 C 1.50693 * 120.75169 * 180.02562 * 17 16 15 19 19 C 1.53001 * 117.50134 * 188.59831 * 18 17 16 20 20 C 1.52993 * 60.00029 * 252.51029 * 19 18 17 21 21 C 1.38836 * 118.49298 * 359.97438 * 17 16 15 22 22 C 1.38069 * 119.31493 * 0.02562 * 21 17 16 23 23 N 1.31936 * 120.84673 * 0.24986 * 22 21 17 24 24 H 1.08987 * 109.47462 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46880 * 300.00260 * 1 2 3 26 26 H 1.09000 * 109.47082 * 59.99379 * 1 2 3 27 27 H 0.97003 * 119.99966 * 180.02562 * 7 6 4 28 28 H 0.97002 * 119.99455 * 5.09505 * 14 12 2 29 29 H 1.07993 * 120.44656 * 359.97438 * 16 15 14 30 30 H 1.08998 * 115.55092 * 334.30994 * 18 17 16 31 31 H 1.09003 * 117.49476 * 0.02562 * 19 18 17 32 32 H 1.08998 * 117.49732 * 145.01473 * 19 18 17 33 33 H 1.09006 * 117.49940 * 252.50455 * 20 19 18 34 34 H 1.08997 * 117.50280 * 107.49085 * 20 19 18 35 35 H 1.08007 * 120.33996 * 180.02562 * 21 17 16 36 36 H 1.08000 * 119.57705 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1198 4.0079 9 1 3.1474 -2.2866 3.6036 10 1 3.1473 -0.1861 4.8160 11 1 1.1679 -1.5868 4.8164 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 2.0814 -0.9652 -3.5909 16 6 1.6525 -0.5418 -4.8439 17 6 2.0313 -1.2614 -5.9634 18 6 1.5883 -0.8356 -7.3394 19 6 1.8767 -1.7888 -8.5009 20 6 2.6775 -0.4930 -8.3578 21 6 2.8298 -2.3839 -5.7903 22 6 3.2188 -2.7468 -4.5162 23 7 2.8376 -2.0442 -3.4666 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7096 1.1616 3.4844 28 1 1.2116 0.5794 -2.5449 29 1 1.0315 0.3362 -4.9420 30 1 0.6638 -0.2595 -7.3783 31 1 2.3866 -2.7240 -8.2697 32 1 1.1417 -1.8401 -9.3042 33 1 2.4694 0.3082 -9.0670 34 1 3.7145 -0.5755 -8.0325 35 1 3.1432 -2.9673 -6.6435 36 1 3.8396 -3.6195 -4.3766 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854530710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:21 Heat of formation + Delta-G solvation = 31.081800 kcal Electronic energy + Delta-G solvation = -18633.593367 eV Core-core repulsion = 15697.890593 eV Total energy + Delta-G solvation = -2935.702774 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.51149 -38.72796 -37.19326 -34.19078 -33.75596 -31.80747 -30.75796 -29.31100 -25.17090 -24.77663 -23.50085 -22.72959 -22.49485 -20.62126 -19.29507 -17.46278 -16.61555 -16.31345 -15.90669 -15.32032 -15.09059 -14.67792 -14.40101 -14.12485 -13.77076 -13.39021 -12.98720 -12.49025 -12.35208 -11.85117 -11.71974 -11.55962 -11.21599 -11.02925 -10.76194 -10.70425 -10.67195 -10.37805 -10.08909 -9.97311 -9.36763 -9.19138 -8.98984 -8.47240 -8.20780 -7.90472 -6.04866 -4.07964 1.34104 1.41989 3.32876 3.39901 3.43102 3.48801 3.52751 3.72713 4.24844 4.30611 4.46160 4.58941 4.71445 4.82094 4.85859 5.16476 5.24062 5.28987 5.34419 5.45311 5.55849 5.76164 5.82290 5.85662 5.93662 6.18793 6.38611 6.57479 6.61354 6.78385 6.87284 7.15425 7.42485 7.66823 7.82568 8.02299 8.24163 8.54456 9.01718 9.17511 9.57972 11.02931 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.049818 B = 0.003982 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.914833 B = 7030.711635 C = 7441.733012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.501 4.501 5 H 0.076 0.924 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.505 3.495 13 O -0.473 6.473 14 N -0.671 5.671 15 C 0.379 3.621 16 C -0.217 4.217 17 C 0.016 3.984 18 C -0.119 4.119 19 C -0.174 4.174 20 C -0.166 4.166 21 C -0.225 4.225 22 C 0.137 3.863 23 N -0.479 5.479 24 H 0.032 0.968 25 H 0.095 0.905 26 H 0.012 0.988 27 H 0.261 0.739 28 H 0.413 0.587 29 H 0.132 0.868 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.305 -0.774 -20.278 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.072 0.928 4 C -0.539 4.539 5 H 0.094 0.906 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.293 3.707 13 O -0.340 6.340 14 N -0.317 5.317 15 C 0.147 3.853 16 C -0.241 4.241 17 C 0.008 3.992 18 C -0.137 4.137 19 C -0.211 4.211 20 C -0.203 4.203 21 C -0.247 4.247 22 C -0.021 4.021 23 N -0.194 5.194 24 H 0.051 0.949 25 H 0.114 0.886 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.249 0.751 29 H 0.150 0.850 30 H 0.134 0.866 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.146 0.854 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.371 -1.626 -19.029 19.102 hybrid contribution -0.342 0.362 -0.096 0.507 sum 0.029 -1.264 -19.125 19.167 Atomic orbital electron populations 1.21765 0.96358 0.99992 1.01053 1.18930 0.94239 0.96922 0.88850 0.92761 1.21176 1.31026 1.12876 0.88849 0.90591 1.24945 0.95058 0.95058 0.99156 1.69875 1.37149 1.23088 1.23514 0.86376 0.78633 0.79810 0.82346 1.19480 1.21025 1.21034 1.22394 0.79257 0.85279 0.83724 1.90646 1.33268 1.24730 1.85397 1.44396 1.56567 1.26019 1.04730 1.18750 0.90575 0.89615 0.86342 1.21222 1.07551 1.04027 0.91253 1.19150 0.93930 0.93269 0.92891 1.21004 1.00600 1.04517 0.87613 1.23063 1.03548 0.94786 0.99654 1.23018 0.96974 0.99172 1.01140 1.21789 1.04228 0.99803 0.98898 1.22651 0.95090 0.97192 0.87184 1.67814 1.12467 1.05961 1.33197 0.94878 0.88618 0.96909 0.92970 0.75122 0.85036 0.86650 0.88147 0.88370 0.88336 0.88428 0.85382 0.82876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.79 2.64 -92.92 -0.24 0.55 16 3 H 0.05 1.38 8.14 -51.93 -0.42 0.95 16 4 C -0.50 -14.28 8.37 -34.45 -0.29 -14.56 16 5 H 0.08 2.30 6.75 -52.49 -0.35 1.95 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.10 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 C 0.50 11.88 7.11 -10.99 -0.08 11.80 16 13 O -0.47 -12.80 13.72 5.55 0.08 -12.73 16 14 N -0.67 -12.48 5.24 -11.43 -0.06 -12.54 16 15 C 0.38 6.79 7.42 -154.71 -1.15 5.64 16 16 C -0.22 -3.00 9.67 -39.24 -0.38 -3.38 16 17 C 0.02 0.19 5.64 -104.36 -0.59 -0.40 16 18 C -0.12 -1.09 6.08 -91.78 -0.56 -1.65 16 19 C -0.17 -1.29 9.88 -26.73 -0.26 -1.56 16 20 C -0.17 -1.28 10.18 -26.74 -0.27 -1.55 16 21 C -0.23 -2.79 9.38 -39.42 -0.37 -3.16 16 22 C 0.14 2.09 11.17 -17.57 -0.20 1.89 16 23 N -0.48 -9.41 7.89 -12.37 -0.10 -9.51 16 24 H 0.03 0.76 8.14 -51.94 -0.42 0.34 16 25 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 26 H 0.01 0.23 7.69 -51.93 -0.40 -0.17 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.41 6.17 8.28 -40.82 -0.34 5.83 16 29 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 0.73 6.25 -51.93 -0.32 0.40 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.13 1.22 6.16 -52.48 -0.32 0.89 16 36 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -33.10 305.22 -8.60 -41.69 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.57 Total: 3.62 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -4.15 Total: -7.57 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.47 Total: -46.52 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.10 -8.60 -41.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854530710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.777 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds