Wall clock time and date at job start Mon Mar 30 2020 06:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47183 * 2 1 4 4 C 1.50693 * 109.47046 * 120.00332 * 2 1 3 5 5 H 1.08001 * 119.99871 * 119.99584 * 4 2 1 6 6 C 1.37873 * 120.00230 * 300.00025 * 4 2 1 7 7 N 1.31513 * 119.99819 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00342 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46619 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47069 * 119.99534 * 8 6 4 11 11 H 1.48491 * 109.46992 * 239.99687 * 8 6 4 12 12 C 1.50700 * 109.46749 * 240.00639 * 2 1 3 13 13 O 1.21286 * 119.99424 * 240.00289 * 12 2 1 14 14 N 1.34772 * 120.00695 * 59.99541 * 12 2 1 15 15 C 1.39400 * 120.00504 * 185.08693 * 14 12 2 16 16 C 1.39041 * 119.69787 * 174.93991 * 15 14 12 17 17 C 1.38362 * 119.10009 * 180.02562 * 16 15 14 18 18 C 1.50693 * 120.75169 * 180.02562 * 17 16 15 19 19 C 1.53001 * 117.50134 * 188.59831 * 18 17 16 20 20 C 1.52993 * 60.00029 * 252.51029 * 19 18 17 21 21 C 1.38836 * 118.49298 * 359.97438 * 17 16 15 22 22 C 1.38069 * 119.31493 * 0.02562 * 21 17 16 23 23 N 1.31936 * 120.84673 * 0.24986 * 22 21 17 24 24 H 1.08987 * 109.47462 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46880 * 300.00260 * 1 2 3 26 26 H 1.09000 * 109.47082 * 59.99379 * 1 2 3 27 27 H 0.97003 * 119.99966 * 180.02562 * 7 6 4 28 28 H 0.97002 * 119.99455 * 5.09505 * 14 12 2 29 29 H 1.07993 * 120.44656 * 359.97438 * 16 15 14 30 30 H 1.08998 * 115.55092 * 334.30994 * 18 17 16 31 31 H 1.09003 * 117.49476 * 0.02562 * 19 18 17 32 32 H 1.08998 * 117.49732 * 145.01473 * 19 18 17 33 33 H 1.09006 * 117.49940 * 252.50455 * 20 19 18 34 34 H 1.08997 * 117.50280 * 107.49085 * 20 19 18 35 35 H 1.08007 * 120.33996 * 180.02562 * 21 17 16 36 36 H 1.08000 * 119.57705 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1198 4.0079 9 1 3.1474 -2.2866 3.6036 10 1 3.1473 -0.1861 4.8160 11 1 1.1679 -1.5868 4.8164 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 2.0814 -0.9652 -3.5909 16 6 1.6525 -0.5418 -4.8439 17 6 2.0313 -1.2614 -5.9634 18 6 1.5883 -0.8356 -7.3394 19 6 1.8767 -1.7888 -8.5009 20 6 2.6775 -0.4930 -8.3578 21 6 2.8298 -2.3839 -5.7903 22 6 3.2188 -2.7468 -4.5162 23 7 2.8376 -2.0442 -3.4666 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7096 1.1616 3.4844 28 1 1.2116 0.5794 -2.5449 29 1 1.0315 0.3362 -4.9420 30 1 0.6638 -0.2595 -7.3783 31 1 2.3866 -2.7240 -8.2697 32 1 1.1417 -1.8401 -9.3042 33 1 2.4694 0.3082 -9.0670 34 1 3.7145 -0.5755 -8.0325 35 1 3.1432 -2.9673 -6.6435 36 1 3.8396 -3.6195 -4.3766 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854530710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:21 Heat of formation + Delta-G solvation = 10.988278 kcal Electronic energy + Delta-G solvation = -18634.464688 eV Core-core repulsion = 15697.890593 eV Total energy + Delta-G solvation = -2936.574095 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.77871 -40.21246 -38.09908 -35.80894 -35.69825 -32.86666 -32.66302 -30.67664 -27.23820 -25.97297 -24.77587 -24.10069 -23.12582 -21.93119 -20.76153 -18.79439 -18.19149 -17.92195 -17.21299 -16.68711 -16.35334 -16.25040 -16.03080 -15.15031 -15.01701 -14.72733 -14.66673 -14.33157 -13.54411 -13.25599 -12.98963 -12.73450 -12.64195 -12.53713 -12.38959 -12.24495 -12.05187 -12.02701 -11.56554 -11.29386 -11.07394 -10.88067 -10.51803 -10.14694 -9.83414 -9.20680 -8.17660 -6.27835 0.17366 0.34613 1.38515 1.40396 1.54158 1.90994 2.06555 2.44600 2.81127 3.12024 3.18837 3.45254 3.65641 3.90440 4.02852 4.09976 4.19844 4.22011 4.37369 4.52665 4.70812 4.79347 4.83689 4.87908 4.90824 4.97757 5.08360 5.13480 5.29116 5.36827 5.45716 5.49036 5.71387 5.83369 5.96009 6.15515 6.43075 6.79639 7.19370 7.38033 7.55196 8.88545 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.049818 B = 0.003982 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.914833 B = 7030.711635 C = 7441.733012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.029 3.971 3 H 0.048 0.952 4 C -0.530 4.530 5 H 0.047 0.953 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.510 3.490 13 O -0.521 6.521 14 N -0.658 5.658 15 C 0.342 3.658 16 C -0.204 4.204 17 C 0.016 3.984 18 C -0.135 4.135 19 C -0.164 4.164 20 C -0.160 4.160 21 C -0.205 4.205 22 C 0.114 3.886 23 N -0.535 5.535 24 H 0.020 0.980 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.266 0.734 28 H 0.428 0.572 29 H 0.161 0.839 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.162 0.838 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 -0.316 -22.885 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.007 3.993 3 H 0.065 0.935 4 C -0.569 4.569 5 H 0.065 0.935 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.782 3.218 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.198 1.198 12 C 0.298 3.702 13 O -0.393 6.393 14 N -0.306 5.306 15 C 0.111 3.889 16 C -0.227 4.227 17 C 0.008 3.992 18 C -0.153 4.153 19 C -0.201 4.201 20 C -0.197 4.197 21 C -0.226 4.226 22 C -0.043 4.043 23 N -0.251 5.251 24 H 0.039 0.961 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.268 0.732 29 H 0.178 0.822 30 H 0.147 0.853 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.110 0.890 35 H 0.179 0.821 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.368 -1.139 -21.693 21.726 hybrid contribution -0.096 0.207 0.523 0.570 sum -0.464 -0.932 -21.171 21.196 Atomic orbital electron populations 1.21573 0.94743 0.99425 1.02061 1.18848 0.95491 0.96088 0.88841 0.93471 1.21286 1.31721 1.12762 0.91091 0.93504 1.25569 0.95129 0.95742 1.01341 1.69940 1.37118 1.23444 1.24363 0.85533 0.78381 0.78559 0.79355 1.20672 1.19799 1.19793 1.21990 0.78724 0.84521 0.84950 1.90615 1.35505 1.26733 1.86403 1.43878 1.56417 1.26561 1.03782 1.18958 0.92551 0.90342 0.87003 1.21480 1.06749 1.04617 0.89881 1.19586 0.92858 0.92542 0.94201 1.21067 1.01817 1.06341 0.86061 1.23195 1.03503 0.94594 0.98803 1.23103 0.96194 1.00028 1.00357 1.22134 1.02338 0.99462 0.98654 1.22990 0.95961 0.97699 0.87647 1.67619 1.14069 1.07492 1.35924 0.96096 0.90676 0.92667 0.92479 0.73234 0.82177 0.85297 0.87917 0.86617 0.86622 0.89041 0.82065 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.87 71.98 0.64 -4.88 16 2 C 0.03 1.47 2.64 -12.29 -0.03 1.44 16 3 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 4 C -0.53 -31.39 8.37 25.60 0.21 -31.17 16 5 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -51.19 11.32 21.45 0.24 -50.95 16 8 Si 0.96 45.67 29.54 68.60 2.03 47.69 16 9 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.51 24.84 7.11 87.66 0.62 25.47 16 13 O -0.52 -29.73 13.72 -3.05 -0.04 -29.77 16 14 N -0.66 -24.67 5.24 -308.45 -1.62 -26.29 16 15 C 0.34 12.23 7.42 132.92 0.99 13.21 16 16 C -0.20 -5.26 9.67 22.49 0.22 -5.04 16 17 C 0.02 0.36 5.64 -19.69 -0.11 0.24 16 18 C -0.13 -1.95 6.08 -11.54 -0.07 -2.02 16 19 C -0.16 -1.74 9.88 30.59 0.30 -1.44 16 20 C -0.16 -1.83 10.18 30.59 0.31 -1.52 16 21 C -0.20 -4.60 9.38 22.37 0.21 -4.39 16 22 C 0.11 3.44 11.17 84.64 0.95 4.39 16 23 N -0.54 -21.54 7.89 -193.05 -1.52 -23.07 16 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 26 H 0.05 2.00 7.69 -2.39 -0.02 1.99 16 27 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.43 12.46 8.28 -92.71 -0.77 11.69 16 29 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 30 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.05 6.25 -2.39 -0.01 1.03 16 32 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.16 2.48 6.16 -2.91 -0.02 2.46 16 36 H 0.17 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -74.81 305.22 4.11 -70.70 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.33 Total: 15.72 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 4.68 Total: -4.05 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -2.90 Total: -100.30 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.04 Total: -29.77 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -74.81 4.11 -70.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854530710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.691 kcal (2) G-P(sol) polarization free energy of solvation -74.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds