Wall clock time and date at job start Mon Mar 30 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 120.00251 * 2 1 4 4 C 1.52997 * 109.47373 * 125.00177 * 3 2 1 5 5 H 1.09000 * 109.47326 * 305.00047 * 4 3 2 6 6 C 1.52996 * 109.47308 * 184.99888 * 4 3 2 7 7 O 1.45203 * 109.47144 * 64.99808 * 4 3 2 8 8 C 1.34709 * 117.00015 * 210.00362 * 7 4 3 9 9 O 1.21467 * 119.99971 * 359.97438 * 8 7 4 10 10 C 1.47771 * 119.99957 * 180.02562 * 8 7 4 11 11 C 1.39970 * 120.02954 * 359.71495 * 10 8 7 12 12 C 1.38312 * 120.35305 * 179.76569 * 11 10 8 13 13 C 1.37761 * 120.41537 * 0.52000 * 12 11 10 14 14 C 1.40757 * 120.05166 * 359.74151 * 13 12 11 15 15 C 1.41439 * 120.17467 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00424 * 334.92685 * 15 14 13 17 17 C 1.39939 * 119.99925 * 154.92546 * 15 14 13 18 18 N 1.30825 * 120.00110 * 342.58488 * 17 15 14 19 19 Si 1.86796 * 120.00214 * 162.58779 * 17 15 14 20 20 H 1.48500 * 109.47156 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47157 * 119.99866 * 19 17 15 22 22 H 1.48499 * 109.47017 * 239.99985 * 19 17 15 23 23 C 1.39047 * 120.02918 * 179.97438 * 10 8 7 24 24 H 1.08001 * 120.00497 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00009 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99369 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47362 * 5.00066 * 3 2 1 28 28 H 1.09000 * 109.46929 * 245.00153 * 3 2 1 29 29 H 1.09003 * 109.47480 * 300.00037 * 6 4 3 30 30 H 1.08998 * 109.47306 * 60.00293 * 6 4 3 31 31 H 1.09004 * 109.47382 * 179.97438 * 6 4 3 32 32 H 1.07997 * 119.82178 * 0.02562 * 11 10 8 33 33 H 1.07997 * 119.79653 * 180.26522 * 12 11 10 34 34 H 1.08000 * 119.97365 * 179.76361 * 13 12 11 35 35 H 0.96997 * 120.00523 * 180.02562 * 18 17 15 36 36 H 1.08001 * 120.20409 * 359.95273 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4884 1.1468 2.1060 6 6 3.7093 2.7044 1.2551 7 8 4.0456 0.3059 1.0017 8 6 4.5693 -0.2388 2.1169 9 8 4.1924 0.1343 3.2097 10 6 5.6030 -1.2894 2.0108 11 6 6.0342 -1.7233 0.7519 12 6 7.0048 -2.7028 0.6448 13 6 7.5507 -3.2702 1.7752 14 6 7.1259 -2.8508 3.0499 15 6 7.6850 -3.4313 4.2123 16 1 8.1062 -4.4249 4.1706 17 6 7.6923 -2.7181 5.4163 18 7 7.5079 -1.4229 5.4105 19 14 7.9656 -3.6153 7.0317 20 1 8.1472 -5.0654 6.7679 21 1 9.1789 -3.0772 7.6978 22 1 6.7875 -3.4169 7.9136 23 6 6.1443 -1.8517 3.1616 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 4.2560 2.8906 0.3307 30 1 2.9508 3.4754 1.3902 31 1 4.4012 2.7245 2.0972 32 1 5.6097 -1.2879 -0.1406 33 1 7.3339 -3.0278 -0.3311 34 1 8.3054 -4.0373 1.6833 35 1 7.5133 -0.9285 6.2450 36 1 5.8122 -1.5226 4.1351 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860906685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:45 Heat of formation + Delta-G solvation = -65.032918 kcal Electronic energy + Delta-G solvation = -18786.895334 eV Core-core repulsion = 15814.731962 eV Total energy + Delta-G solvation = -2972.163372 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88136 -37.54828 -36.36854 -34.66115 -33.74994 -31.68168 -30.16202 -29.50189 -26.70990 -25.40911 -23.66646 -21.26354 -20.93581 -19.87021 -19.66276 -17.91078 -16.56324 -16.04057 -15.40322 -15.31864 -14.91613 -14.64300 -13.91882 -13.55758 -13.37955 -13.01913 -12.98010 -12.59972 -12.40599 -12.05987 -11.76150 -11.61101 -11.23698 -11.13342 -11.06970 -10.91707 -10.75109 -10.52495 -10.22820 -10.08874 -9.72975 -9.45958 -9.32136 -9.25852 -7.74870 -7.56293 -6.83692 -4.44952 1.98973 2.25359 2.76418 3.06218 3.10636 3.12496 3.27493 3.61323 3.89650 4.57127 4.71896 4.94451 5.09920 5.27989 5.33973 5.43506 5.53478 5.53564 5.73517 5.90106 5.97679 6.00906 6.14811 6.23102 6.39780 6.62452 6.64134 6.73116 6.93189 6.95971 7.04700 7.16223 7.30556 7.67718 7.74924 7.90131 8.09568 8.43570 8.59242 8.76110 8.78284 10.11814 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.004985 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.916116 B = 5615.978612 C = 6046.993155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.089 4.089 4 C 0.086 3.914 5 H 0.083 0.917 6 C -0.169 4.169 7 O -0.349 6.349 8 C 0.511 3.489 9 O -0.518 6.518 10 C -0.115 4.115 11 C -0.193 4.193 12 C -0.104 4.104 13 C -0.202 4.202 14 C 0.096 3.904 15 C -0.461 4.461 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.788 5.788 19 Si 0.910 3.090 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.271 1.271 23 C -0.090 4.090 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.284 0.716 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 4.355 -6.894 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.164 4.164 3 C -0.126 4.126 4 C 0.031 3.969 5 H 0.101 0.899 6 C -0.226 4.226 7 O -0.267 6.267 8 C 0.358 3.642 9 O -0.408 6.408 10 C -0.116 4.116 11 C -0.213 4.213 12 C -0.122 4.122 13 C -0.222 4.222 14 C 0.093 3.907 15 C -0.490 4.490 16 H 0.101 0.899 17 C -0.145 4.145 18 N -0.412 5.412 19 Si 0.734 3.266 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.196 1.196 23 C -0.109 4.109 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.132 0.868 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.882 4.709 -6.411 11.198 hybrid contribution 0.105 -0.166 0.840 0.863 sum -7.777 4.543 -5.571 10.591 Atomic orbital electron populations 1.23809 0.95820 1.01661 1.02578 1.23004 0.95901 0.98973 0.98504 1.20910 0.97017 0.96073 0.98621 1.22556 0.88232 0.86668 0.99432 0.89920 1.22193 1.01577 0.95633 1.03214 1.86658 1.52446 1.51034 1.36570 1.21868 0.80276 0.80459 0.81571 1.90745 1.60112 1.61509 1.28435 1.18855 0.98702 0.98319 0.95769 1.20565 1.03191 1.02581 0.94971 1.20512 0.97347 0.97333 0.97050 1.21190 1.03460 1.04966 0.92539 1.17546 0.89830 0.90858 0.92441 1.19602 1.34399 1.02262 0.92703 0.89910 1.25961 0.92647 0.94520 1.01420 1.69783 1.34546 1.07112 1.29788 0.86225 0.78718 0.80813 0.80811 1.18291 1.19885 1.19573 1.21658 0.95226 0.97365 0.96652 0.88520 0.88792 0.86802 0.89820 0.89740 0.91620 0.91212 0.91621 0.87877 0.88554 0.88353 0.90482 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.16 14.32 29.01 0.42 -1.75 16 2 C -0.15 -1.82 9.29 -36.03 -0.33 -2.16 16 3 C -0.09 -1.05 5.37 -27.89 -0.15 -1.20 16 4 C 0.09 1.30 2.55 -26.73 -0.07 1.24 16 5 H 0.08 1.37 7.16 -51.93 -0.37 0.99 16 6 C -0.17 -2.23 9.55 37.16 0.35 -1.88 16 7 O -0.35 -6.57 8.88 -40.52 -0.36 -6.93 16 8 C 0.51 11.56 7.87 34.63 0.27 11.83 16 9 O -0.52 -12.75 15.59 -19.24 -0.30 -13.05 16 10 C -0.12 -2.79 5.87 -105.05 -0.62 -3.41 16 11 C -0.19 -4.27 9.62 -38.91 -0.37 -4.64 16 12 C -0.10 -2.25 10.01 -39.73 -0.40 -2.65 16 13 C -0.20 -4.77 9.78 -38.80 -0.38 -5.15 16 14 C 0.10 2.52 5.57 -106.87 -0.59 1.92 16 15 C -0.46 -12.00 9.05 -37.73 -0.34 -12.34 16 16 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 17 C 0.07 1.83 5.14 -17.34 -0.09 1.75 16 18 N -0.79 -20.70 10.97 55.55 0.61 -20.10 16 19 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 23 C -0.09 -2.39 8.23 -38.43 -0.32 -2.70 16 24 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 25 H 0.09 0.86 7.84 -52.48 -0.41 0.45 16 26 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 27 H 0.08 0.79 7.79 -51.93 -0.40 0.38 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 2.04 7.59 -52.49 -0.40 1.64 16 33 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 36 H 0.14 3.83 5.76 -52.49 -0.30 3.53 16 LS Contribution 315.73 15.07 4.76 4.76 Total: -1.00 -28.43 315.73 -7.76 -36.20 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -4.82 Total: 6.67 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -2.62 Total: -21.13 kcal Atomic # 7 Polarization: -20.70 SS G_CDS: 0.61 Total: -20.10 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.66 Total: -19.98 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.43 -7.76 -36.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860906685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.835 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds