Wall clock time and date at job start Mon Mar 30 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 120.00251 * 2 1 4 4 C 1.52997 * 109.47373 * 125.00177 * 3 2 1 5 5 H 1.09000 * 109.47326 * 305.00047 * 4 3 2 6 6 C 1.52996 * 109.47308 * 184.99888 * 4 3 2 7 7 O 1.45203 * 109.47144 * 64.99808 * 4 3 2 8 8 C 1.34709 * 117.00015 * 210.00362 * 7 4 3 9 9 O 1.21467 * 119.99971 * 359.97438 * 8 7 4 10 10 C 1.47771 * 119.99957 * 180.02562 * 8 7 4 11 11 C 1.39970 * 120.02954 * 359.71495 * 10 8 7 12 12 C 1.38312 * 120.35305 * 179.76569 * 11 10 8 13 13 C 1.37761 * 120.41537 * 0.52000 * 12 11 10 14 14 C 1.40757 * 120.05166 * 359.74151 * 13 12 11 15 15 C 1.41439 * 120.17467 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00424 * 334.92685 * 15 14 13 17 17 C 1.39939 * 119.99925 * 154.92546 * 15 14 13 18 18 N 1.30825 * 120.00110 * 342.58488 * 17 15 14 19 19 Si 1.86796 * 120.00214 * 162.58779 * 17 15 14 20 20 H 1.48500 * 109.47156 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47157 * 119.99866 * 19 17 15 22 22 H 1.48499 * 109.47017 * 239.99985 * 19 17 15 23 23 C 1.39047 * 120.02918 * 179.97438 * 10 8 7 24 24 H 1.08001 * 120.00497 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00009 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99369 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47362 * 5.00066 * 3 2 1 28 28 H 1.09000 * 109.46929 * 245.00153 * 3 2 1 29 29 H 1.09003 * 109.47480 * 300.00037 * 6 4 3 30 30 H 1.08998 * 109.47306 * 60.00293 * 6 4 3 31 31 H 1.09004 * 109.47382 * 179.97438 * 6 4 3 32 32 H 1.07997 * 119.82178 * 0.02562 * 11 10 8 33 33 H 1.07997 * 119.79653 * 180.26522 * 12 11 10 34 34 H 1.08000 * 119.97365 * 179.76361 * 13 12 11 35 35 H 0.96997 * 120.00523 * 180.02562 * 18 17 15 36 36 H 1.08001 * 120.20409 * 359.95273 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4884 1.1468 2.1060 6 6 3.7093 2.7044 1.2551 7 8 4.0456 0.3059 1.0017 8 6 4.5693 -0.2388 2.1169 9 8 4.1924 0.1343 3.2097 10 6 5.6030 -1.2894 2.0108 11 6 6.0342 -1.7233 0.7519 12 6 7.0048 -2.7028 0.6448 13 6 7.5507 -3.2702 1.7752 14 6 7.1259 -2.8508 3.0499 15 6 7.6850 -3.4313 4.2123 16 1 8.1062 -4.4249 4.1706 17 6 7.6923 -2.7181 5.4163 18 7 7.5079 -1.4229 5.4105 19 14 7.9656 -3.6153 7.0317 20 1 8.1472 -5.0654 6.7679 21 1 9.1789 -3.0772 7.6978 22 1 6.7875 -3.4169 7.9136 23 6 6.1443 -1.8517 3.1616 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 4.2560 2.8906 0.3307 30 1 2.9508 3.4754 1.3902 31 1 4.4012 2.7245 2.0972 32 1 5.6097 -1.2879 -0.1406 33 1 7.3339 -3.0278 -0.3311 34 1 8.3054 -4.0373 1.6833 35 1 7.5133 -0.9285 6.2450 36 1 5.8122 -1.5226 4.1351 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860906685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:44 Heat of formation + Delta-G solvation = -78.456257 kcal Electronic energy + Delta-G solvation = -18787.477414 eV Core-core repulsion = 15814.731962 eV Total energy + Delta-G solvation = -2972.745452 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.53264 -39.30423 -37.91892 -35.91056 -35.58304 -32.90018 -31.93154 -31.35819 -27.68694 -27.30701 -25.36150 -22.91219 -22.50175 -21.41588 -20.71632 -19.70501 -18.24675 -17.76430 -17.00055 -16.71300 -16.51126 -16.20430 -15.42448 -15.11680 -14.78567 -14.59669 -14.32869 -14.14277 -13.64579 -13.54186 -13.19999 -12.99091 -12.82414 -12.78063 -12.57308 -12.22627 -12.18927 -12.04547 -12.02426 -11.54963 -11.44992 -11.22781 -11.11221 -10.24776 -9.62703 -9.45645 -8.69829 -6.41515 0.13292 0.95013 1.34694 1.36964 1.44393 1.53373 1.75220 1.81250 2.18351 2.71403 3.61459 3.71418 3.87416 3.88358 4.05190 4.28923 4.37241 4.40837 4.61843 4.64485 4.71507 4.75264 4.91059 4.95543 5.03352 5.05921 5.12612 5.15938 5.27111 5.38949 5.45234 5.72451 5.81246 5.84870 5.88639 5.99922 6.21722 6.51902 6.82416 6.86714 6.88958 8.28104 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.004985 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.916116 B = 5615.978612 C = 6046.993155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.177 4.177 3 C -0.078 4.078 4 C 0.076 3.924 5 H 0.063 0.937 6 C -0.165 4.165 7 O -0.343 6.343 8 C 0.514 3.486 9 O -0.549 6.549 10 C -0.130 4.130 11 C -0.180 4.180 12 C -0.099 4.099 13 C -0.204 4.204 14 C 0.066 3.934 15 C -0.495 4.495 16 H 0.088 0.912 17 C 0.030 3.970 18 N -0.828 5.828 19 Si 0.984 3.016 20 H -0.250 1.250 21 H -0.264 1.264 22 H -0.271 1.271 23 C -0.125 4.125 24 H 0.102 0.898 25 H 0.117 0.883 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.034 0.966 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.116 0.884 35 H 0.288 0.712 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 4.588 -8.742 13.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.195 4.195 3 C -0.114 4.114 4 C 0.021 3.979 5 H 0.081 0.919 6 C -0.222 4.222 7 O -0.260 6.260 8 C 0.362 3.638 9 O -0.441 6.441 10 C -0.131 4.131 11 C -0.200 4.200 12 C -0.117 4.117 13 C -0.223 4.223 14 C 0.064 3.936 15 C -0.524 4.524 16 H 0.106 0.894 17 C -0.185 4.185 18 N -0.454 5.454 19 Si 0.804 3.196 20 H -0.173 1.173 21 H -0.188 1.188 22 H -0.196 1.196 23 C -0.144 4.144 24 H 0.120 0.880 25 H 0.135 0.865 26 H 0.109 0.891 27 H 0.134 0.866 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.054 0.946 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.134 0.866 35 H 0.098 0.902 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.618 4.943 -8.303 12.947 hybrid contribution 0.215 -0.181 1.216 1.248 sum -8.403 4.762 -7.087 11.979 Atomic orbital electron populations 1.24052 0.95224 1.03067 0.99595 1.22979 0.96709 0.98559 1.01300 1.20921 0.96575 0.96789 0.97148 1.23027 0.87923 0.86399 1.00533 0.91851 1.22204 1.02019 0.95361 1.02633 1.86615 1.53051 1.51807 1.34530 1.21668 0.79953 0.80166 0.81966 1.90720 1.61110 1.62471 1.29789 1.19130 0.99127 0.98711 0.96135 1.20953 1.02347 1.01811 0.94869 1.20969 0.96169 0.96138 0.98389 1.21514 1.03551 1.05038 0.92240 1.17903 0.90250 0.91435 0.93990 1.19899 1.35857 1.02813 0.93823 0.89398 1.26868 0.91807 0.94987 1.04807 1.69876 1.35983 1.08761 1.30786 0.85128 0.78693 0.79777 0.75970 1.17309 1.18846 1.19566 1.21466 0.97173 0.99497 0.96302 0.87981 0.86517 0.89146 0.86561 0.88740 0.90190 0.87789 0.94640 0.84997 0.84065 0.86606 0.90185 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.45 14.32 67.78 0.97 -2.48 16 2 C -0.18 -4.16 9.29 25.64 0.24 -3.92 16 3 C -0.08 -1.62 5.37 29.84 0.16 -1.46 16 4 C 0.08 2.21 2.55 30.59 0.08 2.29 16 5 H 0.06 2.11 7.16 -2.39 -0.02 2.10 16 6 C -0.17 -4.12 9.55 71.98 0.69 -3.43 16 7 O -0.34 -12.82 8.88 -56.19 -0.50 -13.32 16 8 C 0.51 23.95 7.87 70.34 0.55 24.50 16 9 O -0.55 -28.39 15.59 19.94 0.31 -28.07 16 10 C -0.13 -6.43 5.87 -20.14 -0.12 -6.55 16 11 C -0.18 -7.70 9.62 22.71 0.22 -7.48 16 12 C -0.10 -4.03 10.01 22.17 0.22 -3.81 16 13 C -0.20 -9.50 9.78 22.77 0.22 -9.28 16 14 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 15 C -0.49 -26.62 9.05 23.47 0.21 -26.41 16 16 H 0.09 4.44 7.90 -2.91 -0.02 4.41 16 17 C 0.03 1.55 5.14 85.25 0.44 1.99 16 18 N -0.83 -45.79 10.97 21.82 0.24 -45.55 16 19 Si 0.98 39.08 29.59 68.60 2.03 41.11 16 20 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 22 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 23 C -0.12 -6.96 8.23 23.02 0.19 -6.77 16 24 H 0.10 1.80 8.06 -2.91 -0.02 1.77 16 25 H 0.12 1.68 7.84 -2.91 -0.02 1.65 16 26 H 0.09 2.51 8.06 -2.91 -0.02 2.49 16 27 H 0.12 1.70 7.79 -2.39 -0.02 1.68 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.13 4.83 7.59 -2.91 -0.02 4.81 16 33 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 34 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 35 H 0.29 14.56 8.30 -92.71 -0.77 13.79 16 36 H 0.10 6.37 5.76 -2.91 -0.02 6.35 16 Total: -1.00 -65.31 315.73 7.10 -58.21 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 1.06 Total: 26.94 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 3.96 Total: -39.32 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.24 Total: -45.55 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.19 Total: -41.39 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -65.31 7.10 -58.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860906685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.247 kcal (2) G-P(sol) polarization free energy of solvation -65.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds