Wall clock time and date at job start Mon Mar 30 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48496 * 109.47288 * 270.00220 * 3 2 1 5 5 H 1.48507 * 109.47068 * 30.00523 * 3 2 1 6 6 H 1.48499 * 109.47061 * 149.99809 * 3 2 1 7 7 C 1.37875 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99638 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00368 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47371 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47287 * 180.02562 * 10 9 7 12 12 C 1.46961 * 110.99861 * 169.99841 * 11 10 9 13 13 C 1.53049 * 109.36181 * 183.18775 * 12 11 10 14 14 N 1.46965 * 109.36659 * 301.60325 * 13 12 11 15 15 C 1.39677 * 110.99759 * 183.18867 * 14 13 12 16 16 C 1.38912 * 120.07048 * 179.97438 * 15 14 13 17 17 C 1.38099 * 119.92393 * 180.02562 * 16 15 14 18 18 C 1.38285 * 120.07607 * 0.02562 * 17 16 15 19 19 C 1.38288 * 120.14912 * 359.97438 * 18 17 16 20 20 C 1.38107 * 120.07582 * 0.02562 * 19 18 17 21 21 C 1.46955 * 110.87927 * 59.32047 * 14 13 12 22 22 C 1.46950 * 111.00121 * 293.80252 * 11 10 9 23 23 H 0.97001 * 120.00432 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46413 * 60.00084 * 9 7 2 25 25 H 1.09001 * 109.47037 * 300.00267 * 9 7 2 26 26 H 1.09001 * 109.47172 * 60.00091 * 10 9 7 27 27 H 1.09001 * 109.47303 * 300.00159 * 10 9 7 28 28 H 1.08998 * 109.48396 * 63.22463 * 12 11 10 29 29 H 1.08992 * 109.48955 * 303.15338 * 12 11 10 30 30 H 1.09002 * 109.49137 * 181.63280 * 13 12 11 31 31 H 1.09007 * 109.49063 * 61.56507 * 13 12 11 32 32 H 1.08001 * 120.03609 * 0.02562 * 16 15 14 33 33 H 1.07995 * 119.96581 * 179.97438 * 17 16 15 34 34 H 1.07998 * 119.92755 * 179.72532 * 18 17 16 35 35 H 1.07997 * 119.96260 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.03841 * 180.02562 * 20 19 18 37 37 H 1.09006 * 109.48950 * 60.64738 * 21 14 13 38 38 H 1.09000 * 109.48705 * 180.71100 * 21 14 13 39 39 H 1.08998 * 109.48829 * 296.77675 * 22 11 10 40 40 H 1.09002 * 109.48906 * 56.83876 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5109 -4.9343 -0.0024 12 6 2.4176 -6.0657 -0.2420 13 6 1.6051 -7.3607 -0.3142 14 7 0.8627 -7.5409 0.9413 15 6 0.1644 -8.7506 0.9407 16 6 -0.6029 -9.1119 2.0408 17 6 -1.2917 -10.3089 2.0371 18 6 -1.2178 -11.1476 0.9402 19 6 -0.4549 -10.7909 -0.1567 20 6 0.2365 -9.5954 -0.1597 21 6 -0.0440 -6.4094 1.1807 22 6 0.7686 -5.1145 1.2529 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5566 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8726 -3.6047 0.8877 27 1 2.8713 -3.6039 -0.8923 28 1 3.1378 -6.1333 0.5734 29 1 2.9462 -5.9151 -1.1831 30 1 2.2785 -8.2048 -0.4629 31 1 0.9034 -7.3038 -1.1465 32 1 -0.6607 -8.4575 2.8980 33 1 -1.8881 -10.5906 2.8922 34 1 -1.7539 -12.0851 0.9417 35 1 -0.3989 -11.4484 -1.0116 36 1 0.8318 -9.3172 -1.0167 37 1 -0.7643 -6.3418 0.3654 38 1 -0.5727 -6.5600 2.1219 39 1 1.4701 -5.1713 2.0852 40 1 0.0952 -4.2704 1.4016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019436139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:25 Heat of formation + Delta-G solvation = 18.984332 kcal Electronic energy + Delta-G solvation = -19044.468505 eV Core-core repulsion = 16244.074240 eV Total energy + Delta-G solvation = -2800.394265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.33400 -39.28416 -36.80713 -35.04285 -32.64334 -32.20855 -31.38616 -30.14713 -27.55034 -25.65949 -25.09401 -23.07494 -22.54670 -21.91005 -20.74691 -18.78504 -18.42696 -16.80530 -16.61881 -16.46083 -16.16237 -16.12111 -15.60085 -15.37469 -14.92128 -14.69794 -14.47215 -14.23316 -14.15604 -13.50712 -13.21408 -13.03868 -12.82039 -12.60946 -12.44445 -12.37257 -12.22477 -11.98071 -11.86813 -11.66076 -11.28624 -11.21618 -10.65932 -10.54214 -9.82652 -9.26371 -8.79542 -8.20372 -6.31660 0.47949 0.51839 1.40241 1.41696 1.52629 2.39872 2.63070 2.97878 3.01708 3.13087 3.76792 3.91797 3.99727 4.11429 4.18135 4.23074 4.31711 4.32810 4.46954 4.52933 4.60282 4.61656 4.65397 4.75487 4.76919 4.86551 4.90811 4.99176 5.07847 5.15396 5.33484 5.44269 5.53895 5.64039 5.68294 5.75894 5.86955 5.98878 6.07387 6.22907 6.29581 6.38494 6.85232 7.37419 8.91709 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.050453 B = 0.003482 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.841551 B = 8039.151563 C = 8325.176001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.037 3.963 10 C 0.080 3.920 11 N -0.552 5.552 12 C 0.055 3.945 13 C 0.062 3.938 14 N -0.498 5.498 15 C 0.095 3.905 16 C -0.157 4.157 17 C -0.100 4.100 18 C -0.154 4.154 19 C -0.100 4.100 20 C -0.184 4.184 21 C 0.074 3.926 22 C 0.059 3.941 23 H 0.264 0.736 24 H -0.008 1.008 25 H -0.005 1.005 26 H 0.020 0.980 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.041 0.959 38 H 0.096 0.904 39 H 0.035 0.965 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 -21.965 1.643 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.047 4.047 11 N -0.277 5.277 12 C -0.073 4.073 13 C -0.065 4.065 14 N -0.214 5.214 15 C -0.003 4.003 16 C -0.177 4.177 17 C -0.119 4.119 18 C -0.172 4.172 19 C -0.118 4.118 20 C -0.204 4.204 21 C -0.051 4.051 22 C -0.070 4.070 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.013 0.987 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.059 0.941 38 H 0.115 0.885 39 H 0.053 0.947 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.297 -21.767 1.645 21.831 hybrid contribution 0.318 1.267 0.125 1.313 sum 0.021 -20.500 1.769 20.576 Atomic orbital electron populations 1.70106 1.07799 1.27779 1.51419 1.25959 0.95756 1.03310 0.94635 0.85433 0.78626 0.78366 0.78520 1.19721 1.20727 1.18761 1.21622 0.93527 0.92272 1.50909 0.92186 1.18911 0.94180 0.91872 0.95065 1.21966 0.95385 0.88120 0.99214 1.62197 1.28352 1.02572 1.34546 1.22247 0.93978 0.89469 1.01642 1.22338 0.97194 0.97672 0.89332 1.59279 1.25943 1.01301 1.34855 1.19208 0.94396 0.91848 0.94798 1.20999 1.00036 0.98916 0.97761 1.21311 0.98135 0.93234 0.99188 1.21415 1.00885 1.00982 0.93965 1.21325 0.95578 0.95795 0.99099 1.21529 1.04058 0.97212 0.97623 1.22188 0.93129 0.87895 1.01928 1.22120 0.97297 0.97074 0.90493 0.92752 0.98974 0.98681 0.96194 0.91447 0.94538 0.88956 0.87850 0.93159 0.85748 0.83884 0.83881 0.83953 0.84918 0.94104 0.88550 0.94667 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.04 2.00 4.90 29.85 0.15 2.15 16 10 C 0.08 3.46 4.90 86.30 0.42 3.88 16 11 N -0.55 -20.39 4.71 -895.75 -4.22 -24.61 16 12 C 0.05 1.59 5.61 86.31 0.48 2.08 16 13 C 0.06 1.55 4.29 86.31 0.37 1.92 16 14 N -0.50 -13.42 4.75 -694.75 -3.30 -16.72 16 15 C 0.09 2.33 5.64 38.21 0.22 2.54 16 16 C -0.16 -3.48 9.19 22.40 0.21 -3.28 16 17 C -0.10 -1.80 10.04 22.25 0.22 -1.58 16 18 C -0.15 -2.53 10.04 22.29 0.22 -2.31 16 19 C -0.10 -1.76 10.04 22.25 0.22 -1.53 16 20 C -0.18 -3.93 8.82 22.40 0.20 -3.73 16 21 C 0.07 2.17 5.38 86.31 0.46 2.63 16 22 C 0.06 2.06 5.41 86.31 0.47 2.53 16 23 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 24 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 25 H -0.01 -0.29 6.50 -2.39 -0.02 -0.31 16 26 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 27 H 0.07 2.79 8.03 -2.39 -0.02 2.77 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 29 H 0.09 2.44 8.07 -2.39 -0.02 2.42 16 30 H 0.10 2.13 7.17 -2.39 -0.02 2.11 16 31 H 0.05 1.31 7.58 -2.38 -0.02 1.29 16 32 H 0.12 2.63 7.19 -2.91 -0.02 2.61 16 33 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.13 2.55 5.81 -2.91 -0.02 2.53 16 37 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.10 2.48 6.82 -2.39 -0.02 2.47 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 2.76 6.34 -2.39 -0.02 2.75 16 Total: -1.00 -65.98 316.85 0.13 -65.84 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.00 Total: 11.12 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 4.34 Total: -25.27 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -7.24 Total: -98.20 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -65.98 0.13 -65.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019436139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.829 kcal (2) G-P(sol) polarization free energy of solvation -65.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds