Wall clock time and date at job start Mon Mar 30 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47219 * 2 1 4 4 C 1.50697 * 109.47021 * 120.00030 * 2 1 3 5 5 H 1.07994 * 119.99793 * 84.93284 * 4 2 1 6 6 C 1.37878 * 120.00062 * 264.92379 * 4 2 1 7 7 N 1.31507 * 119.99908 * 179.77483 * 6 4 2 8 8 Si 1.86801 * 120.00103 * 359.77533 * 6 4 2 9 9 H 1.48495 * 109.47385 * 268.23410 * 8 6 4 10 10 H 1.48503 * 109.46722 * 28.23255 * 8 6 4 11 11 H 1.48495 * 109.47285 * 148.22921 * 8 6 4 12 12 C 1.50698 * 109.47053 * 240.00226 * 2 1 3 13 13 O 1.21260 * 119.99812 * 269.99913 * 12 2 1 14 14 C 1.47171 * 120.00364 * 89.99715 * 12 2 1 15 15 C 1.39849 * 120.16909 * 359.72726 * 14 12 2 16 16 C 1.37884 * 119.82700 * 179.73778 * 15 14 12 17 17 C 1.38410 * 120.16900 * 0.53644 * 16 15 14 18 18 C 1.50693 * 119.82687 * 179.69260 * 17 16 15 19 19 C 1.53001 * 109.47373 * 240.02315 * 18 17 16 20 20 C 1.53008 * 109.47340 * 0.02582 * 18 17 16 21 21 C 1.53002 * 109.47105 * 120.02109 * 18 17 16 22 22 C 1.38404 * 120.34799 * 359.71846 * 17 16 15 23 23 C 1.37894 * 120.17325 * 0.02562 * 22 17 16 24 24 H 1.09003 * 109.47263 * 54.41207 * 1 2 3 25 25 H 1.08995 * 109.47247 * 174.41077 * 1 2 3 26 26 H 1.09005 * 109.46630 * 294.41309 * 1 2 3 27 27 H 0.97008 * 120.00277 * 180.02562 * 7 6 4 28 28 H 1.08007 * 120.08986 * 359.97438 * 15 14 12 29 29 H 1.08000 * 119.91768 * 180.22937 * 16 15 14 30 30 H 1.09001 * 109.46962 * 60.00490 * 19 18 17 31 31 H 1.09003 * 109.46977 * 179.97438 * 19 18 17 32 32 H 1.08992 * 109.47277 * 299.99834 * 19 18 17 33 33 H 1.08996 * 109.46798 * 59.99646 * 20 18 17 34 34 H 1.08998 * 109.46921 * 179.97438 * 20 18 17 35 35 H 1.09000 * 109.46537 * 299.99637 * 20 18 17 36 36 H 1.09006 * 109.46838 * 60.00533 * 21 18 17 37 37 H 1.09000 * 109.46986 * 179.97438 * 21 18 17 38 38 H 1.08996 * 109.47390 * 300.00572 * 21 18 17 39 39 H 1.08000 * 119.91736 * 179.97438 * 22 17 16 40 40 H 1.07996 * 120.08667 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1344 -1.7855 1.2293 6 6 2.3617 0.0122 2.3575 7 7 2.7958 -0.6081 3.4328 8 14 2.1913 1.8725 2.3573 9 1 3.4758 2.4872 1.9362 10 1 1.1183 2.2710 1.4112 11 1 1.8442 2.3380 3.7240 12 6 2.0323 -0.7103 -1.2305 13 8 2.2344 -1.9056 -1.2005 14 6 2.2776 0.0465 -2.4686 15 6 2.0402 1.4241 -2.5089 16 6 2.2775 2.1272 -3.6710 17 6 2.7389 1.4711 -4.7990 18 6 2.9891 2.2460 -6.0671 19 6 2.1040 1.6929 -7.1858 20 6 2.6574 3.7218 -5.8368 21 6 4.4599 2.1101 -6.4660 22 6 2.9711 0.1070 -4.7687 23 6 2.7436 -0.6092 -3.6125 24 1 -0.3634 0.5981 -0.8357 25 1 -0.3633 -1.0227 -0.1001 26 1 -0.3633 0.4248 0.9359 27 1 3.0272 -0.0998 4.2259 28 1 1.6756 1.9367 -1.6309 29 1 2.0983 3.1918 -3.7027 30 1 1.0562 1.7898 -6.9016 31 1 2.2847 2.2537 -8.1029 32 1 2.3403 0.6416 -7.3499 33 1 3.2880 4.1158 -5.0398 34 1 2.8389 4.2823 -6.7539 35 1 1.6096 3.8186 -5.5527 36 1 4.6962 1.0587 -6.6301 37 1 4.6408 2.6702 -7.3834 38 1 5.0905 2.5041 -5.6690 39 1 3.3307 -0.3979 -5.6531 40 1 2.9249 -1.6736 -3.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:20 Heat of formation + Delta-G solvation = -35.134407 kcal Electronic energy + Delta-G solvation = -19322.993167 eV Core-core repulsion = 16487.959386 eV Total energy + Delta-G solvation = -2835.033781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98807 -38.39164 -35.96054 -33.74181 -31.56841 -30.86329 -29.88052 -27.51370 -27.43679 -25.27447 -24.47445 -22.40785 -21.59245 -19.50402 -18.65049 -17.23276 -16.37167 -15.41700 -15.09333 -14.60625 -14.46672 -14.42658 -13.76742 -13.69441 -13.37992 -13.33551 -12.74641 -12.61749 -12.46255 -12.26498 -12.07465 -11.94426 -11.84587 -11.50185 -11.29572 -11.14722 -11.09521 -10.79121 -10.73205 -10.53088 -10.28151 -9.80863 -9.11196 -8.79030 -8.67412 -8.49285 -8.48054 -6.09318 -4.09852 1.06512 1.57764 3.10027 3.24207 3.30251 3.32883 4.13298 4.36690 4.42881 4.58654 4.81631 4.82491 5.10176 5.12237 5.13427 5.25506 5.36644 5.41809 5.56169 5.56809 5.62865 5.67557 5.72431 5.80438 5.87697 5.97233 6.07946 6.11257 6.14391 6.18054 6.27680 6.46928 6.56829 6.60507 6.66622 6.70876 6.97860 7.10291 7.20307 7.61534 8.41334 8.59705 9.04481 9.50251 11.03786 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.005154 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.262181 B = 5431.126622 C = 5881.527389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.028 4.028 3 H 0.052 0.948 4 C -0.507 4.507 5 H 0.085 0.915 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.868 3.132 9 H -0.275 1.275 10 H -0.260 1.260 11 H -0.285 1.285 12 C 0.402 3.598 13 O -0.453 6.453 14 C -0.157 4.157 15 C -0.072 4.072 16 C -0.137 4.137 17 C -0.056 4.056 18 C -0.031 4.031 19 C -0.138 4.138 20 C -0.145 4.145 21 C -0.139 4.139 22 C -0.131 4.131 23 C -0.068 4.068 24 H 0.028 0.972 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.265 0.735 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.121 0.879 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 9.371 -20.196 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.048 4.048 3 H 0.070 0.930 4 C -0.544 4.544 5 H 0.104 0.896 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.695 3.305 9 H -0.201 1.201 10 H -0.185 1.185 11 H -0.211 1.211 12 C 0.279 3.721 13 O -0.328 6.328 14 C -0.158 4.158 15 C -0.090 4.090 16 C -0.155 4.155 17 C -0.056 4.056 18 C -0.031 4.031 19 C -0.195 4.195 20 C -0.202 4.202 21 C -0.196 4.196 22 C -0.149 4.149 23 C -0.086 4.086 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.139 0.861 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.562 8.754 -19.972 21.814 hybrid contribution 0.027 1.081 0.219 1.103 sum -0.534 9.835 -19.753 22.073 Atomic orbital electron populations 1.21886 0.96399 1.00638 0.99939 1.19584 0.94252 0.97297 0.93619 0.92977 1.20858 1.43367 0.96165 0.94042 0.89649 1.25034 0.94372 0.98124 0.95405 1.69890 1.44266 1.35864 1.03232 0.86977 0.79147 0.86594 0.77783 1.20080 1.18477 1.21113 1.23124 0.72796 0.88488 0.87742 1.90380 1.39856 1.17413 1.85104 1.21100 1.03010 0.95073 0.96647 1.21605 0.95998 0.93343 0.98057 1.21127 1.01571 1.00173 0.92618 1.19958 0.97331 0.93720 0.94561 1.19534 0.96126 0.94860 0.92630 1.21887 0.99530 1.00992 0.97107 1.21974 1.01858 0.94581 1.01771 1.21894 0.94457 1.02065 1.01172 1.20870 1.02372 0.93653 0.98044 1.21434 0.95079 1.00401 0.91718 0.95309 0.93195 0.92381 0.92523 0.84948 0.85433 0.92416 0.92439 0.92352 0.92105 0.92482 0.92135 0.92344 0.92437 0.92352 0.86104 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.11 37.16 0.34 -2.40 16 2 C -0.03 -0.66 1.63 -92.93 -0.15 -0.82 16 3 H 0.05 1.17 3.70 -51.93 -0.19 0.98 16 4 C -0.51 -14.58 8.59 -34.44 -0.30 -14.87 16 5 H 0.09 2.78 7.54 -52.49 -0.40 2.38 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.89 -27.53 13.96 55.43 0.77 -26.75 16 8 Si 0.87 20.75 26.87 -169.99 -4.57 16.18 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.26 -5.70 6.69 56.52 0.38 -5.32 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.40 9.07 6.17 -30.68 -0.19 8.88 16 13 O -0.45 -11.50 16.03 5.57 0.09 -11.41 16 14 C -0.16 -2.90 5.87 -105.07 -0.62 -3.51 16 15 C -0.07 -1.15 9.36 -39.11 -0.37 -1.52 16 16 C -0.14 -1.81 8.95 -39.65 -0.36 -2.17 16 17 C -0.06 -0.68 4.77 -104.50 -0.50 -1.18 16 18 C -0.03 -0.30 0.85 -155.66 -0.13 -0.43 16 19 C -0.14 -1.15 8.29 37.16 0.31 -0.84 16 20 C -0.14 -1.20 7.13 37.16 0.26 -0.94 16 21 C -0.14 -1.20 8.29 37.16 0.31 -0.89 16 22 C -0.13 -1.73 8.68 -39.65 -0.34 -2.07 16 23 C -0.07 -1.11 9.60 -39.10 -0.38 -1.48 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.13 2.08 6.37 -52.48 -0.33 1.74 16 29 H 0.13 1.39 5.87 -52.49 -0.31 1.08 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.48 7.37 -51.93 -0.38 0.10 16 33 H 0.06 0.51 7.50 -51.93 -0.39 0.12 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.50 7.50 -51.93 -0.39 0.11 16 36 H 0.06 0.50 7.37 -51.93 -0.38 0.12 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.12 1.30 7.07 -52.49 -0.37 0.93 16 40 H 0.13 2.10 7.65 -52.49 -0.40 1.70 16 LS Contribution 321.73 15.07 4.85 4.85 Total: -1.00 -31.88 321.73 -7.14 -39.02 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.08 Total: 0.37 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -2.20 Total: -22.25 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.75 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.57 Total: 16.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.88 -7.14 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.881 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds