Wall clock time and date at job start Mon Mar 30 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47219 * 2 1 4 4 C 1.50697 * 109.47021 * 120.00030 * 2 1 3 5 5 H 1.07994 * 119.99793 * 84.93284 * 4 2 1 6 6 C 1.37878 * 120.00062 * 264.92379 * 4 2 1 7 7 N 1.31507 * 119.99908 * 179.77483 * 6 4 2 8 8 Si 1.86801 * 120.00103 * 359.77533 * 6 4 2 9 9 H 1.48495 * 109.47385 * 268.23410 * 8 6 4 10 10 H 1.48503 * 109.46722 * 28.23255 * 8 6 4 11 11 H 1.48495 * 109.47285 * 148.22921 * 8 6 4 12 12 C 1.50698 * 109.47053 * 240.00226 * 2 1 3 13 13 O 1.21260 * 119.99812 * 269.99913 * 12 2 1 14 14 C 1.47171 * 120.00364 * 89.99715 * 12 2 1 15 15 C 1.39849 * 120.16909 * 359.72726 * 14 12 2 16 16 C 1.37884 * 119.82700 * 179.73778 * 15 14 12 17 17 C 1.38410 * 120.16900 * 0.53644 * 16 15 14 18 18 C 1.50693 * 119.82687 * 179.69260 * 17 16 15 19 19 C 1.53001 * 109.47373 * 240.02315 * 18 17 16 20 20 C 1.53008 * 109.47340 * 0.02582 * 18 17 16 21 21 C 1.53002 * 109.47105 * 120.02109 * 18 17 16 22 22 C 1.38404 * 120.34799 * 359.71846 * 17 16 15 23 23 C 1.37894 * 120.17325 * 0.02562 * 22 17 16 24 24 H 1.09003 * 109.47263 * 54.41207 * 1 2 3 25 25 H 1.08995 * 109.47247 * 174.41077 * 1 2 3 26 26 H 1.09005 * 109.46630 * 294.41309 * 1 2 3 27 27 H 0.97008 * 120.00277 * 180.02562 * 7 6 4 28 28 H 1.08007 * 120.08986 * 359.97438 * 15 14 12 29 29 H 1.08000 * 119.91768 * 180.22937 * 16 15 14 30 30 H 1.09001 * 109.46962 * 60.00490 * 19 18 17 31 31 H 1.09003 * 109.46977 * 179.97438 * 19 18 17 32 32 H 1.08992 * 109.47277 * 299.99834 * 19 18 17 33 33 H 1.08996 * 109.46798 * 59.99646 * 20 18 17 34 34 H 1.08998 * 109.46921 * 179.97438 * 20 18 17 35 35 H 1.09000 * 109.46537 * 299.99637 * 20 18 17 36 36 H 1.09006 * 109.46838 * 60.00533 * 21 18 17 37 37 H 1.09000 * 109.46986 * 179.97438 * 21 18 17 38 38 H 1.08996 * 109.47390 * 300.00572 * 21 18 17 39 39 H 1.08000 * 119.91736 * 179.97438 * 22 17 16 40 40 H 1.07996 * 120.08667 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1344 -1.7855 1.2293 6 6 2.3617 0.0122 2.3575 7 7 2.7958 -0.6081 3.4328 8 14 2.1913 1.8725 2.3573 9 1 3.4758 2.4872 1.9362 10 1 1.1183 2.2710 1.4112 11 1 1.8442 2.3380 3.7240 12 6 2.0323 -0.7103 -1.2305 13 8 2.2344 -1.9056 -1.2005 14 6 2.2776 0.0465 -2.4686 15 6 2.0402 1.4241 -2.5089 16 6 2.2775 2.1272 -3.6710 17 6 2.7389 1.4711 -4.7990 18 6 2.9891 2.2460 -6.0671 19 6 2.1040 1.6929 -7.1858 20 6 2.6574 3.7218 -5.8368 21 6 4.4599 2.1101 -6.4660 22 6 2.9711 0.1070 -4.7687 23 6 2.7436 -0.6092 -3.6125 24 1 -0.3634 0.5981 -0.8357 25 1 -0.3633 -1.0227 -0.1001 26 1 -0.3633 0.4248 0.9359 27 1 3.0272 -0.0998 4.2259 28 1 1.6756 1.9367 -1.6309 29 1 2.0983 3.1918 -3.7027 30 1 1.0562 1.7898 -6.9016 31 1 2.2847 2.2537 -8.1029 32 1 2.3403 0.6416 -7.3499 33 1 3.2880 4.1158 -5.0398 34 1 2.8389 4.2823 -6.7539 35 1 1.6096 3.8186 -5.5527 36 1 4.6962 1.0587 -6.6301 37 1 4.6408 2.6702 -7.3834 38 1 5.0905 2.5041 -5.6690 39 1 3.3307 -0.3979 -5.6531 40 1 2.9249 -1.6736 -3.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:20 Heat of formation + Delta-G solvation = -53.329672 kcal Electronic energy + Delta-G solvation = -19323.782172 eV Core-core repulsion = 16487.959386 eV Total energy + Delta-G solvation = -2835.822787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.22118 -39.86887 -36.98975 -35.73810 -33.52317 -32.05467 -31.11946 -28.18372 -28.05604 -27.30747 -25.93297 -23.71901 -22.90219 -20.71530 -19.97543 -19.18830 -17.83463 -16.99549 -16.28515 -16.01049 -15.80611 -15.45087 -15.16126 -15.05711 -14.64751 -14.42025 -14.40794 -13.99765 -13.63270 -13.55094 -13.17804 -13.02676 -12.86819 -12.72837 -12.60074 -12.48536 -12.34993 -12.14049 -11.79176 -11.77015 -11.64099 -11.37993 -11.17953 -10.80111 -10.28023 -9.92793 -9.67110 -8.31147 -6.39729 -0.23630 0.44638 1.34787 1.36994 1.49241 1.61242 2.34026 2.85377 3.01702 3.30069 3.64529 3.77325 4.04383 4.10701 4.15647 4.34409 4.40094 4.41638 4.48996 4.56591 4.74470 4.83635 4.84035 4.85403 4.88835 4.96049 5.02779 5.06323 5.08788 5.11281 5.19531 5.27883 5.37278 5.44368 5.48509 5.48601 5.50430 5.60655 5.67392 5.98010 6.24331 6.69746 6.82606 7.25008 8.86631 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.005154 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.262181 B = 5431.126622 C = 5881.527389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.033 4.033 3 H 0.074 0.926 4 C -0.522 4.522 5 H 0.021 0.979 6 C 0.008 3.992 7 N -0.951 5.951 8 Si 0.942 3.058 9 H -0.263 1.263 10 H -0.220 1.220 11 H -0.283 1.283 12 C 0.399 3.601 13 O -0.504 6.504 14 C -0.189 4.189 15 C -0.074 4.074 16 C -0.132 4.132 17 C -0.041 4.041 18 C -0.031 4.031 19 C -0.138 4.138 20 C -0.147 4.147 21 C -0.140 4.140 22 C -0.126 4.126 23 C -0.079 4.079 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.268 0.732 28 H 0.138 0.862 29 H 0.159 0.841 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.147 0.853 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 13.593 -23.387 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.052 4.052 3 H 0.091 0.909 4 C -0.560 4.560 5 H 0.040 0.960 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.763 3.237 9 H -0.188 1.188 10 H -0.142 1.142 11 H -0.208 1.208 12 C 0.280 3.720 13 O -0.382 6.382 14 C -0.190 4.190 15 C -0.092 4.092 16 C -0.150 4.150 17 C -0.041 4.041 18 C -0.031 4.031 19 C -0.195 4.195 20 C -0.204 4.204 21 C -0.197 4.197 22 C -0.144 4.144 23 C -0.097 4.097 24 H 0.089 0.911 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.156 0.844 29 H 0.176 0.824 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.164 0.836 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.066 12.981 -23.195 26.602 hybrid contribution 0.227 -0.307 1.101 1.166 sum -0.839 12.674 -22.094 25.485 Atomic orbital electron populations 1.21785 0.94130 1.00699 1.01753 1.19620 0.96048 0.97617 0.91904 0.90861 1.20997 1.44150 0.93774 0.97031 0.96032 1.26114 0.93493 1.04888 0.94339 1.70078 1.45938 1.38679 1.04345 0.85810 0.80829 0.78174 0.78889 1.18831 1.14199 1.20845 1.23370 0.71329 0.88043 0.89262 1.90357 1.42379 1.19389 1.86092 1.20719 1.06911 0.96103 0.95261 1.21707 0.95970 0.92089 0.99469 1.21467 1.00370 1.01540 0.91600 1.20433 0.94508 0.93452 0.95703 1.19638 0.96910 0.95325 0.91233 1.21899 0.98973 1.01260 0.97392 1.22003 1.02029 0.93601 1.02733 1.21914 0.93578 1.02371 1.01823 1.21112 1.01460 0.94234 0.97582 1.21456 0.95633 1.00192 0.92430 0.91074 0.94712 0.92266 0.92271 0.84383 0.82355 0.92783 0.90614 0.92422 0.92139 0.90846 0.91823 0.92438 0.90553 0.93092 0.83574 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.11 71.98 0.66 -4.51 16 2 C -0.03 -1.55 1.63 -12.29 -0.02 -1.57 16 3 H 0.07 3.15 3.70 -2.39 -0.01 3.14 16 4 C -0.52 -31.62 8.59 25.60 0.22 -31.40 16 5 H 0.02 1.52 7.54 -2.91 -0.02 1.50 16 6 C 0.01 0.50 5.47 84.66 0.46 0.96 16 7 N -0.95 -61.23 13.96 21.45 0.30 -60.94 16 8 Si 0.94 42.15 26.87 68.60 1.84 43.99 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.22 -8.35 6.69 99.48 0.67 -7.69 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 C 0.40 18.68 6.17 28.03 0.17 18.85 16 13 O -0.50 -27.52 16.03 -2.97 -0.05 -27.57 16 14 C -0.19 -6.90 5.87 -20.15 -0.12 -7.02 16 15 C -0.07 -2.18 9.36 22.58 0.21 -1.97 16 16 C -0.13 -2.98 8.95 22.23 0.20 -2.78 16 17 C -0.04 -0.85 4.77 -19.79 -0.09 -0.95 16 18 C -0.03 -0.45 0.85 -52.93 -0.05 -0.49 16 19 C -0.14 -1.72 8.29 71.98 0.60 -1.12 16 20 C -0.15 -1.71 7.13 71.98 0.51 -1.20 16 21 C -0.14 -1.85 8.29 71.98 0.60 -1.25 16 22 C -0.13 -3.03 8.68 22.23 0.19 -2.83 16 23 C -0.08 -2.54 9.60 22.58 0.22 -2.32 16 24 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 2.39 7.96 -2.38 -0.02 2.37 16 27 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 28 H 0.14 3.82 6.37 -2.91 -0.02 3.80 16 29 H 0.16 2.61 5.87 -2.91 -0.02 2.59 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.73 7.37 -2.39 -0.02 0.71 16 33 H 0.06 0.73 7.50 -2.39 -0.02 0.71 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.72 7.50 -2.39 -0.02 0.71 16 36 H 0.06 0.77 7.37 -2.38 -0.02 0.76 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.15 2.72 7.07 -2.91 -0.02 2.70 16 40 H 0.12 3.97 7.65 -2.91 -0.02 3.95 16 Total: -1.00 -75.65 321.73 6.83 -68.82 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.97 Total: 15.30 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 3.76 Total: -39.61 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.30 Total: -60.94 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.84 Total: 43.99 kcal Total: -75.65 6.83 -68.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.491 kcal (2) G-P(sol) polarization free energy of solvation -75.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds