Wall clock time and date at job start Mon Mar 30 2020 06:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 O 1.21256 * 119.99905 * 94.99249 * 12 2 1 14 14 C 1.47170 * 120.00374 * 275.00232 * 12 2 1 15 15 C 1.39857 * 120.16685 * 359.71867 * 14 12 2 16 16 C 1.37886 * 119.82286 * 179.81053 * 15 14 12 17 17 C 1.38404 * 120.16771 * 0.44529 * 16 15 14 18 18 C 1.50708 * 119.82193 * 179.76294 * 17 16 15 19 19 C 1.53005 * 109.46949 * 240.02193 * 18 17 16 20 20 C 1.53000 * 109.46883 * 0.02562 * 18 17 16 21 21 C 1.52992 * 109.46924 * 120.02307 * 18 17 16 22 22 C 1.38401 * 120.35629 * 359.78732 * 17 16 15 23 23 C 1.37891 * 120.16816 * 359.97438 * 22 17 16 24 24 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 25 25 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 26 26 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 28 28 H 1.08005 * 120.08732 * 0.02562 * 15 14 12 29 29 H 1.07993 * 119.91607 * 180.20508 * 16 15 14 30 30 H 1.09001 * 109.47045 * 60.00423 * 19 18 17 31 31 H 1.08994 * 109.46685 * 179.97438 * 19 18 17 32 32 H 1.08997 * 109.47164 * 299.99870 * 19 18 17 33 33 H 1.08996 * 109.47440 * 60.00375 * 20 18 17 34 34 H 1.09000 * 109.46642 * 180.02562 * 20 18 17 35 35 H 1.08997 * 109.47202 * 299.99586 * 20 18 17 36 36 H 1.08997 * 109.47399 * 60.00001 * 21 18 17 37 37 H 1.09005 * 109.47370 * 179.97438 * 21 18 17 38 38 H 1.09004 * 109.47561 * 299.99804 * 21 18 17 39 39 H 1.07993 * 119.91667 * 179.97438 * 22 17 16 40 40 H 1.08000 * 120.08709 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 8 2.3207 -1.8869 1.1759 14 6 2.1730 0.0237 2.4982 15 6 1.8469 1.3821 2.5636 16 6 1.9776 2.0621 3.7561 17 6 2.4389 1.4058 4.8839 18 6 2.5838 2.1579 6.1819 19 6 4.0439 2.1128 6.6371 20 6 2.1576 3.6131 5.9784 21 6 1.6971 1.5110 7.2478 22 6 2.7683 0.0628 4.8261 23 6 2.6384 -0.6322 3.6423 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9026 -0.5282 -4.4376 28 1 1.4903 1.8964 1.6833 29 1 1.7231 3.1102 3.8091 30 1 4.6756 2.5737 5.8778 31 1 4.1487 2.6571 7.5756 32 1 4.3474 1.0760 6.7821 33 1 1.1175 3.6452 5.6542 34 1 2.2629 4.1571 6.9171 35 1 2.7893 4.0740 5.2191 36 1 2.0006 0.4743 7.3927 37 1 1.8022 2.0547 8.1867 38 1 0.6569 1.5431 6.9235 39 1 3.1279 -0.4421 5.7104 40 1 2.8962 -1.6801 3.5986 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:23 Heat of formation + Delta-G solvation = -27.384493 kcal Electronic energy + Delta-G solvation = -19297.330030 eV Core-core repulsion = 16462.632311 eV Total energy + Delta-G solvation = -2834.697719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.01481 -38.44027 -35.98336 -33.90827 -31.55650 -30.87785 -29.89727 -27.52665 -27.44885 -25.17593 -24.57194 -22.50598 -21.70519 -19.54949 -18.71079 -17.02627 -16.29852 -15.49220 -15.11489 -14.72146 -14.59421 -14.46275 -13.85936 -13.75556 -13.37833 -13.34768 -12.85498 -12.64065 -12.58156 -12.23814 -12.09851 -11.98212 -11.87124 -11.71551 -11.37072 -11.11768 -10.96853 -10.80559 -10.64511 -10.51840 -10.22526 -9.66598 -9.11943 -8.80702 -8.63116 -8.53317 -8.50075 -6.07244 -4.07623 1.03871 1.56035 3.06687 3.24063 3.30722 3.36261 4.10217 4.37281 4.41364 4.57394 4.80027 4.80567 5.08609 5.11102 5.11981 5.23701 5.35379 5.40683 5.55160 5.55643 5.61324 5.66468 5.70898 5.78667 5.86567 5.92044 6.07061 6.09975 6.10604 6.15002 6.21891 6.40009 6.48436 6.57593 6.64315 6.66321 6.89862 7.07385 7.17556 7.61001 8.41174 8.56292 9.04592 9.51667 11.05880 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.004827 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.140102 B = 5799.023696 C = 6259.341374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 H 0.051 0.949 4 C -0.510 4.510 5 H 0.086 0.914 6 C 0.071 3.929 7 N -0.896 5.896 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.266 1.266 11 H -0.295 1.295 12 C 0.405 3.595 13 O -0.449 6.449 14 C -0.158 4.158 15 C -0.070 4.070 16 C -0.137 4.137 17 C -0.055 4.055 18 C -0.032 4.032 19 C -0.139 4.139 20 C -0.145 4.145 21 C -0.138 4.138 22 C -0.132 4.132 23 C -0.068 4.068 24 H 0.035 0.965 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.265 0.735 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.121 0.879 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.888 9.364 20.865 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 H 0.069 0.931 4 C -0.547 4.547 5 H 0.104 0.896 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.191 1.191 11 H -0.223 1.223 12 C 0.282 3.718 13 O -0.323 6.323 14 C -0.159 4.159 15 C -0.088 4.088 16 C -0.155 4.155 17 C -0.055 4.055 18 C -0.032 4.032 19 C -0.196 4.196 20 C -0.202 4.202 21 C -0.195 4.195 22 C -0.150 4.150 23 C -0.086 4.086 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.146 0.854 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.139 0.861 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.724 8.726 20.630 22.411 hybrid contribution -0.618 0.858 -0.316 1.104 sum -1.342 9.584 20.314 22.501 Atomic orbital electron populations 1.22032 0.96782 1.01650 0.99343 1.19587 0.93552 0.97937 0.93832 0.93116 1.20907 1.32387 1.13795 0.87646 0.89606 1.24981 0.95721 0.96639 0.95713 1.69890 1.45418 1.40179 0.97902 0.86881 0.80734 0.83738 0.77088 1.20451 1.19111 1.22287 1.22813 0.72956 0.87887 0.88135 1.90395 1.37717 1.17922 1.86313 1.21036 1.03115 0.95308 0.96397 1.21620 0.95780 0.93403 0.98022 1.21130 1.01770 1.00284 0.92335 1.19967 0.97176 0.93827 0.94526 1.19536 0.96226 0.94948 0.92451 1.21892 0.94574 1.02138 1.00974 1.21972 1.01627 0.94791 1.01794 1.21889 0.99536 1.00604 0.97511 1.20866 1.02333 0.93994 0.97778 1.21428 0.95270 1.00256 0.91649 0.94582 0.93222 0.92336 0.92539 0.84789 0.85417 0.92353 0.92431 0.92340 0.92134 0.92481 0.92094 0.92357 0.92432 0.92409 0.86095 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.66 37.16 0.32 -2.70 16 2 C -0.03 -0.71 1.53 -92.92 -0.14 -0.85 16 3 H 0.05 1.15 5.79 -51.93 -0.30 0.85 16 4 C -0.51 -14.78 8.91 -34.44 -0.31 -15.09 16 5 H 0.09 2.80 7.27 -52.49 -0.38 2.42 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 8 Si 0.89 21.45 24.37 -169.99 -4.14 17.31 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.27 -5.94 6.53 56.52 0.37 -5.57 16 11 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 12 C 0.41 9.05 6.22 -30.68 -0.19 8.86 16 13 O -0.45 -11.34 15.81 5.58 0.09 -11.25 16 14 C -0.16 -2.84 5.87 -105.06 -0.62 -3.45 16 15 C -0.07 -1.09 9.37 -39.10 -0.37 -1.46 16 16 C -0.14 -1.76 8.95 -39.65 -0.36 -2.12 16 17 C -0.05 -0.66 4.77 -104.50 -0.50 -1.15 16 18 C -0.03 -0.29 0.85 -155.66 -0.13 -0.42 16 19 C -0.14 -1.16 8.29 37.16 0.31 -0.85 16 20 C -0.14 -1.17 7.13 37.16 0.26 -0.90 16 21 C -0.14 -1.13 8.28 37.15 0.31 -0.82 16 22 C -0.13 -1.69 8.68 -39.65 -0.34 -2.04 16 23 C -0.07 -1.08 9.60 -39.11 -0.38 -1.45 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.13 2.04 6.47 -52.48 -0.34 1.70 16 29 H 0.13 1.34 5.87 -52.49 -0.31 1.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.48 7.37 -51.93 -0.38 0.10 16 33 H 0.06 0.48 7.50 -51.93 -0.39 0.10 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.50 7.50 -51.93 -0.39 0.11 16 36 H 0.06 0.47 7.37 -51.93 -0.38 0.09 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.12 1.27 7.07 -52.49 -0.37 0.90 16 40 H 0.13 2.06 7.65 -52.49 -0.40 1.66 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -32.12 315.65 -6.71 -38.82 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.96 Total: -0.18 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.22 Total: -22.48 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.98 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.31 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.12 -6.71 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.440 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds