Wall clock time and date at job start Mon Mar 30 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 O 1.21256 * 119.99905 * 94.99249 * 12 2 1 14 14 C 1.47170 * 120.00374 * 275.00232 * 12 2 1 15 15 C 1.39857 * 120.16685 * 359.71867 * 14 12 2 16 16 C 1.37886 * 119.82286 * 179.81053 * 15 14 12 17 17 C 1.38404 * 120.16771 * 0.44529 * 16 15 14 18 18 C 1.50708 * 119.82193 * 179.76294 * 17 16 15 19 19 C 1.53005 * 109.46949 * 240.02193 * 18 17 16 20 20 C 1.53000 * 109.46883 * 0.02562 * 18 17 16 21 21 C 1.52992 * 109.46924 * 120.02307 * 18 17 16 22 22 C 1.38401 * 120.35629 * 359.78732 * 17 16 15 23 23 C 1.37891 * 120.16816 * 359.97438 * 22 17 16 24 24 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 25 25 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 26 26 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 28 28 H 1.08005 * 120.08732 * 0.02562 * 15 14 12 29 29 H 1.07993 * 119.91607 * 180.20508 * 16 15 14 30 30 H 1.09001 * 109.47045 * 60.00423 * 19 18 17 31 31 H 1.08994 * 109.46685 * 179.97438 * 19 18 17 32 32 H 1.08997 * 109.47164 * 299.99870 * 19 18 17 33 33 H 1.08996 * 109.47440 * 60.00375 * 20 18 17 34 34 H 1.09000 * 109.46642 * 180.02562 * 20 18 17 35 35 H 1.08997 * 109.47202 * 299.99586 * 20 18 17 36 36 H 1.08997 * 109.47399 * 60.00001 * 21 18 17 37 37 H 1.09005 * 109.47370 * 179.97438 * 21 18 17 38 38 H 1.09004 * 109.47561 * 299.99804 * 21 18 17 39 39 H 1.07993 * 119.91667 * 179.97438 * 22 17 16 40 40 H 1.08000 * 120.08709 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 8 2.3207 -1.8869 1.1759 14 6 2.1730 0.0237 2.4982 15 6 1.8469 1.3821 2.5636 16 6 1.9776 2.0621 3.7561 17 6 2.4389 1.4058 4.8839 18 6 2.5838 2.1579 6.1819 19 6 4.0439 2.1128 6.6371 20 6 2.1576 3.6131 5.9784 21 6 1.6971 1.5110 7.2478 22 6 2.7683 0.0628 4.8261 23 6 2.6384 -0.6322 3.6423 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9026 -0.5282 -4.4376 28 1 1.4903 1.8964 1.6833 29 1 1.7231 3.1102 3.8091 30 1 4.6756 2.5737 5.8778 31 1 4.1487 2.6571 7.5756 32 1 4.3474 1.0760 6.7821 33 1 1.1175 3.6452 5.6542 34 1 2.2629 4.1571 6.9171 35 1 2.7893 4.0740 5.2191 36 1 2.0006 0.4743 7.3927 37 1 1.8022 2.0547 8.1867 38 1 0.6569 1.5431 6.9235 39 1 3.1279 -0.4421 5.7104 40 1 2.8962 -1.6801 3.5986 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:22 Heat of formation + Delta-G solvation = -46.467379 kcal Electronic energy + Delta-G solvation = -19298.157526 eV Core-core repulsion = 16462.632311 eV Total energy + Delta-G solvation = -2835.525215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.23773 -39.89394 -36.99187 -35.89668 -33.52314 -32.05212 -31.12919 -28.18096 -28.05374 -27.19975 -26.07175 -23.84096 -22.95272 -20.76534 -19.97381 -18.92137 -17.80619 -17.18299 -16.30309 -16.13417 -15.85445 -15.54068 -15.16349 -15.08047 -14.70988 -14.49672 -14.35779 -13.98606 -13.66290 -13.61513 -13.52519 -12.90714 -12.81742 -12.72546 -12.59054 -12.48057 -12.31816 -12.10738 -11.78822 -11.64590 -11.50747 -11.37944 -11.23574 -10.79960 -10.28583 -9.92027 -9.66901 -8.31284 -6.39507 -0.24213 0.45406 1.31870 1.37733 1.49721 1.58164 2.32239 2.85931 3.02925 3.23222 3.64277 3.78208 4.05494 4.10481 4.15940 4.33230 4.37712 4.41568 4.47965 4.53684 4.62150 4.80162 4.84140 4.84947 4.87683 4.96355 4.97347 5.04158 5.09128 5.11306 5.17647 5.28119 5.37786 5.38837 5.46378 5.48747 5.49942 5.60161 5.67938 5.98453 6.23419 6.68572 6.79738 7.24879 8.86547 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.004827 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.140102 B = 5799.023696 C = 6259.341374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 H 0.072 0.928 4 C -0.527 4.527 5 H 0.023 0.977 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.958 3.042 9 H -0.262 1.262 10 H -0.226 1.226 11 H -0.296 1.296 12 C 0.404 3.596 13 O -0.501 6.501 14 C -0.188 4.188 15 C -0.071 4.071 16 C -0.132 4.132 17 C -0.040 4.040 18 C -0.031 4.031 19 C -0.140 4.140 20 C -0.147 4.147 21 C -0.138 4.138 22 C -0.127 4.127 23 C -0.078 4.078 24 H 0.080 0.920 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.268 0.732 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.146 0.854 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 13.257 24.012 27.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.053 4.053 3 H 0.090 0.910 4 C -0.565 4.565 5 H 0.041 0.959 6 C -0.189 4.189 7 N -0.591 5.591 8 Si 0.782 3.218 9 H -0.188 1.188 10 H -0.149 1.149 11 H -0.223 1.223 12 C 0.284 3.716 13 O -0.379 6.379 14 C -0.189 4.189 15 C -0.089 4.089 16 C -0.150 4.150 17 C -0.040 4.040 18 C -0.031 4.031 19 C -0.197 4.197 20 C -0.204 4.204 21 C -0.196 4.196 22 C -0.144 4.144 23 C -0.097 4.097 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.176 0.824 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.164 0.836 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.119 12.631 23.814 27.039 hybrid contribution -0.077 -0.405 -1.178 1.248 sum -2.196 12.226 22.636 25.820 Atomic orbital electron populations 1.21945 0.94500 1.01440 1.01458 1.19609 0.95399 0.98161 0.92173 0.91032 1.21094 1.32054 1.12575 0.90742 0.95872 1.26049 0.97282 1.00809 0.94712 1.70079 1.47503 1.42777 0.98775 0.85723 0.78681 0.79067 0.78355 1.18794 1.14890 1.22346 1.23099 0.71422 0.87355 0.89687 1.90372 1.40366 1.19979 1.87230 1.20643 1.07070 0.96450 0.94696 1.21717 0.95614 0.92131 0.99465 1.21464 1.00661 1.01560 0.91295 1.20434 0.94350 0.93440 0.95805 1.19638 0.97079 0.95454 0.90941 1.21912 0.93695 1.02391 1.01676 1.22000 1.01720 0.93837 1.02803 1.21901 0.98950 1.00798 0.97910 1.21102 1.01524 0.94549 0.97271 1.21448 0.95762 1.00048 0.92410 0.90132 0.93135 0.93936 0.92292 0.84203 0.82371 0.93033 0.90591 0.92440 0.91849 0.90889 0.92080 0.92439 0.90642 0.92800 0.83620 0.86529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 8.66 71.98 0.62 -5.00 16 2 C -0.03 -1.63 1.53 -12.29 -0.02 -1.65 16 3 H 0.07 3.11 5.79 -2.39 -0.01 3.10 16 4 C -0.53 -32.18 8.91 25.60 0.23 -31.95 16 5 H 0.02 1.65 7.27 -2.91 -0.02 1.62 16 6 C 0.01 0.49 5.45 84.66 0.46 0.95 16 7 N -0.95 -61.73 13.96 21.45 0.30 -61.43 16 8 Si 0.96 43.53 24.37 68.60 1.67 45.20 16 9 H -0.26 -11.25 6.87 99.48 0.68 -10.57 16 10 H -0.23 -8.79 6.53 99.48 0.65 -8.14 16 11 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 12 C 0.40 18.70 6.22 28.03 0.17 18.87 16 13 O -0.50 -27.27 15.81 -2.96 -0.05 -27.32 16 14 C -0.19 -6.70 5.87 -20.15 -0.12 -6.82 16 15 C -0.07 -2.03 9.37 22.58 0.21 -1.82 16 16 C -0.13 -2.88 8.95 22.23 0.20 -2.68 16 17 C -0.04 -0.82 4.77 -19.78 -0.09 -0.91 16 18 C -0.03 -0.44 0.85 -52.93 -0.05 -0.48 16 19 C -0.14 -1.79 8.29 71.98 0.60 -1.19 16 20 C -0.15 -1.66 7.13 71.98 0.51 -1.15 16 21 C -0.14 -1.69 8.28 71.98 0.60 -1.10 16 22 C -0.13 -2.97 8.68 22.23 0.19 -2.78 16 23 C -0.08 -2.48 9.60 22.58 0.22 -2.26 16 24 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.05 2.06 3.27 -2.39 -0.01 2.05 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.27 16.07 8.31 -92.70 -0.77 15.30 16 28 H 0.14 3.75 6.47 -2.91 -0.02 3.73 16 29 H 0.16 2.51 5.87 -2.91 -0.02 2.49 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.75 7.37 -2.39 -0.02 0.73 16 33 H 0.06 0.70 7.50 -2.39 -0.02 0.68 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.71 7.50 -2.39 -0.02 0.69 16 36 H 0.06 0.72 7.37 -2.39 -0.02 0.70 16 37 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.15 2.66 7.07 -2.91 -0.02 2.64 16 40 H 0.12 3.90 7.65 -2.91 -0.02 3.88 16 Total: -1.00 -76.13 315.65 6.60 -69.53 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.94 Total: 13.99 kcal Atomic # 6 Polarization: -43.71 SS G_CDS: 3.74 Total: -39.97 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.30 Total: -61.43 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.05 Total: -27.32 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.67 Total: 45.20 kcal Total: -76.13 6.60 -69.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.061 kcal (2) G-P(sol) polarization free energy of solvation -76.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds