Wall clock time and date at job start Mon Mar 30 2020 07:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46921 * 2 1 4 4 H 1.08998 * 109.47011 * 58.69776 * 3 2 1 5 5 C 1.50702 * 109.46835 * 178.69588 * 3 2 1 6 6 H 1.08002 * 119.99401 * 119.99692 * 5 3 2 7 7 C 1.37874 * 120.00240 * 299.99728 * 5 3 2 8 8 N 1.31509 * 119.99861 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00116 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47237 * 59.99897 * 9 7 5 11 11 H 1.48496 * 109.47190 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47279 * 299.99997 * 9 7 5 13 13 N 1.46904 * 109.47067 * 298.69518 * 3 2 1 14 14 C 1.46422 * 110.99707 * 320.07557 * 13 3 2 15 15 C 1.53387 * 108.65386 * 287.74741 * 14 13 3 16 16 C 1.53042 * 107.91023 * 291.78133 * 15 14 13 17 17 C 1.50792 * 109.65651 * 47.27093 * 16 15 14 18 18 C 1.39271 * 118.12736 * 164.59071 * 17 16 15 19 19 N 1.39670 * 119.83427 * 359.66437 * 18 17 16 20 20 C 1.38742 * 120.33628 * 179.64024 * 18 17 16 21 21 C 1.38190 * 119.79846 * 359.97438 * 20 18 17 22 22 C 1.37850 * 120.03501 * 0.13155 * 21 20 18 23 23 C 1.38235 * 122.05352 * 344.45996 * 17 16 15 24 24 H 1.09004 * 109.47205 * 184.22304 * 1 2 3 25 25 H 1.09002 * 109.47134 * 304.21533 * 1 2 3 26 26 H 1.08995 * 109.47754 * 64.22248 * 1 2 3 27 27 H 1.09004 * 109.46888 * 240.00185 * 2 1 3 28 28 H 1.08994 * 109.47188 * 119.99808 * 2 1 3 29 29 H 0.96998 * 120.00487 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.61381 * 47.49994 * 14 13 3 31 31 H 1.09008 * 109.60465 * 167.99807 * 14 13 3 32 32 H 1.09002 * 109.77655 * 172.16997 * 15 14 13 33 33 H 1.08999 * 109.81046 * 51.40512 * 15 14 13 34 34 H 1.09005 * 109.43733 * 287.21811 * 16 15 14 35 35 H 1.08997 * 109.44648 * 167.33091 * 16 15 14 36 36 H 0.97006 * 119.99528 * 359.97438 * 19 18 17 37 37 H 0.97000 * 120.00547 * 180.02562 * 19 18 17 38 38 H 1.07994 * 120.10419 * 179.97438 * 20 18 17 39 39 H 1.08000 * 119.97977 * 180.14797 * 21 20 18 40 40 H 1.07994 * 119.71262 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6576 1.9630 0.8781 5 6 3.5466 1.4427 0.0323 6 1 4.1038 1.9042 -0.7695 7 6 4.2136 0.8536 1.0854 8 7 3.5350 0.2912 2.0615 9 14 6.0811 0.8544 1.1259 10 1 6.5757 2.2546 1.1262 11 1 6.5500 0.1630 2.3536 12 1 6.6024 0.1456 -0.0704 13 7 1.5761 2.1259 -1.2149 14 6 1.6484 1.2375 -2.3766 15 6 3.1219 1.0478 -2.7582 16 6 3.6457 2.3833 -3.2914 17 6 3.2383 3.4965 -2.3593 18 6 3.8815 4.7255 -2.4837 19 7 4.8776 4.8939 -3.4482 20 6 3.5375 5.7835 -1.6548 21 6 2.5512 5.6164 -0.7014 22 6 1.9138 4.4008 -0.5738 23 6 2.2555 3.3288 -1.4018 24 1 -0.3634 -1.0249 0.0757 25 1 -0.3633 0.5779 0.8498 26 1 -0.3634 0.4469 -0.9253 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 4.0042 -0.1229 2.8026 30 1 1.2081 0.2722 -2.1269 31 1 1.1086 1.6833 -3.2121 32 1 3.2074 0.2833 -3.5305 33 1 3.6956 0.7508 -1.8803 34 1 3.2278 2.5678 -4.2811 35 1 4.7329 2.3460 -3.3585 36 1 5.1201 4.1558 -4.0290 37 1 5.3275 5.7487 -3.5367 38 1 4.0390 6.7348 -1.7542 39 1 2.2794 6.4388 -0.0562 40 1 1.1440 4.2759 0.1733 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037906242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:49 Heat of formation + Delta-G solvation = 36.650833 kcal Electronic energy + Delta-G solvation = -20892.909310 eV Core-core repulsion = 18093.281122 eV Total energy + Delta-G solvation = -2799.628188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08221 -37.19684 -34.14817 -33.59180 -31.93131 -30.73045 -29.18967 -27.36231 -27.01734 -24.17095 -22.98256 -22.27834 -20.93333 -19.67315 -18.40555 -16.84405 -16.47682 -16.37491 -15.25928 -14.62847 -14.30300 -14.22997 -13.53745 -13.41180 -13.04341 -12.84300 -12.42922 -12.03704 -11.98106 -11.77958 -11.28071 -11.21766 -11.02936 -10.92932 -10.76007 -10.68108 -10.41201 -10.13972 -9.90984 -9.72796 -9.56965 -9.36067 -8.92093 -8.37494 -8.11981 -7.03708 -6.71428 -5.99042 -4.08424 2.23460 2.43191 3.28615 3.33590 3.38074 4.32621 4.40205 4.59892 5.04783 5.24880 5.49165 5.54531 5.73615 5.82674 5.95124 6.06325 6.23209 6.24626 6.29578 6.33913 6.38124 6.50266 6.51912 6.54308 6.63274 6.70363 6.95914 7.04199 7.11480 7.12493 7.27551 7.33416 7.38896 7.47880 7.69026 7.76191 7.96365 8.03326 8.11372 8.19189 8.38571 8.59423 8.97971 9.55426 11.00223 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.010323 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.247237 B = 2711.716662 C = 3327.518404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.224 3.776 4 H 0.044 0.956 5 C -0.540 4.540 6 H 0.076 0.924 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.505 5.505 14 C 0.058 3.942 15 C -0.180 4.180 16 C -0.058 4.058 17 C -0.194 4.194 18 C 0.222 3.778 19 N -0.885 5.885 20 C -0.235 4.235 21 C -0.068 4.068 22 C -0.176 4.176 23 C 0.214 3.786 24 H 0.028 0.972 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.261 0.739 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.122 0.878 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.392 0.608 37 H 0.390 0.610 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.764 4.761 -8.494 9.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.122 3.878 4 H 0.062 0.938 5 C -0.578 4.578 6 H 0.093 0.907 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.220 5.220 14 C -0.070 4.070 15 C -0.218 4.218 16 C -0.095 4.095 17 C -0.202 4.202 18 C 0.119 3.881 19 N -0.426 5.426 20 C -0.258 4.258 21 C -0.087 4.087 22 C -0.197 4.197 23 C 0.116 3.884 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.140 0.860 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.221 0.779 37 H 0.217 0.783 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.311 4.687 -8.171 9.511 hybrid contribution 2.243 -0.078 -0.256 2.258 sum 0.931 4.609 -8.427 9.650 Atomic orbital electron populations 1.21817 0.98693 0.98788 1.00847 1.21857 0.92316 0.99239 1.02791 1.19377 0.93137 0.90022 0.85306 0.93824 1.21948 0.92115 1.36620 1.07137 0.90660 1.24877 0.97840 0.95167 0.95394 1.69854 1.35127 1.37290 1.10085 0.86773 0.86435 0.78310 0.77297 1.20234 1.21320 1.20370 1.59196 1.53080 1.03806 1.05950 1.22155 0.95193 0.97666 0.91997 1.22731 0.99809 0.95598 1.03712 1.20145 0.99252 0.93824 0.96304 1.19216 1.01182 0.94181 1.05582 1.17504 0.88474 0.93114 0.89011 1.42447 1.43184 1.16393 1.40543 1.20177 1.05323 0.97877 1.02464 1.20499 0.95069 0.96672 0.96453 1.20688 1.03873 0.92393 1.02779 1.18093 0.87839 0.90964 0.91535 0.95241 0.93756 0.93516 0.93935 0.88464 0.92860 0.89507 0.93045 0.93317 0.86030 0.93019 0.92618 0.77946 0.78291 0.87646 0.87161 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.39 37.16 0.35 -2.44 16 2 C -0.12 -2.78 4.67 -26.73 -0.12 -2.90 16 3 C 0.22 5.36 1.83 -68.86 -0.13 5.23 16 4 H 0.04 1.18 8.11 -51.93 -0.42 0.76 16 5 C -0.54 -13.90 5.65 -34.44 -0.19 -14.10 16 6 H 0.08 1.97 4.21 -52.49 -0.22 1.75 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.29 11.31 55.43 0.63 -23.67 16 9 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.50 -10.74 4.22 -165.06 -0.70 -11.44 16 14 C 0.06 1.10 4.81 -3.88 -0.02 1.08 16 15 C -0.18 -3.40 5.46 -26.51 -0.14 -3.54 16 16 C -0.06 -1.02 4.68 -27.82 -0.13 -1.15 16 17 C -0.19 -3.82 4.71 -104.19 -0.49 -4.31 16 18 C 0.22 3.97 6.72 -83.72 -0.56 3.41 16 19 N -0.89 -12.26 8.97 32.45 0.29 -11.97 16 20 C -0.24 -4.09 9.89 -39.41 -0.39 -4.48 16 21 C -0.07 -1.22 10.03 -39.74 -0.40 -1.62 16 22 C -0.18 -3.59 9.55 -39.18 -0.37 -3.97 16 23 C 0.21 4.55 3.98 -83.87 -0.33 4.22 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.86 6.61 -51.93 -0.34 0.51 16 27 H 0.04 0.93 5.87 -51.93 -0.30 0.62 16 28 H 0.10 2.46 6.04 -51.93 -0.31 2.15 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.09 1.62 4.42 -51.93 -0.23 1.39 16 31 H 0.05 0.92 8.11 -51.92 -0.42 0.50 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 2.71 4.42 -51.93 -0.23 2.48 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.94 7.17 -51.93 -0.37 0.57 16 36 H 0.39 4.97 6.95 -40.82 -0.28 4.68 16 37 H 0.39 4.41 8.83 -40.82 -0.36 4.05 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 297.80 15.07 4.49 4.49 Total: -1.00 -27.65 297.80 -8.94 -36.59 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -5.60 Total: 12.67 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -3.03 Total: -22.81 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.22 Total: -47.08 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.65 -8.94 -36.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037906242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.244 kcal (2) G-P(sol) polarization free energy of solvation -27.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds