Wall clock time and date at job start Mon Mar 30 2020 07:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46921 * 2 1 4 4 H 1.08998 * 109.47011 * 58.69776 * 3 2 1 5 5 C 1.50702 * 109.46835 * 178.69588 * 3 2 1 6 6 H 1.08002 * 119.99401 * 119.99692 * 5 3 2 7 7 C 1.37874 * 120.00240 * 299.99728 * 5 3 2 8 8 N 1.31509 * 119.99861 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00116 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47237 * 59.99897 * 9 7 5 11 11 H 1.48496 * 109.47190 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47279 * 299.99997 * 9 7 5 13 13 N 1.46904 * 109.47067 * 298.69518 * 3 2 1 14 14 C 1.46422 * 110.99707 * 320.07557 * 13 3 2 15 15 C 1.53387 * 108.65386 * 287.74741 * 14 13 3 16 16 C 1.53042 * 107.91023 * 291.78133 * 15 14 13 17 17 C 1.50792 * 109.65651 * 47.27093 * 16 15 14 18 18 C 1.39271 * 118.12736 * 164.59071 * 17 16 15 19 19 N 1.39670 * 119.83427 * 359.66437 * 18 17 16 20 20 C 1.38742 * 120.33628 * 179.64024 * 18 17 16 21 21 C 1.38190 * 119.79846 * 359.97438 * 20 18 17 22 22 C 1.37850 * 120.03501 * 0.13155 * 21 20 18 23 23 C 1.38235 * 122.05352 * 344.45996 * 17 16 15 24 24 H 1.09004 * 109.47205 * 184.22304 * 1 2 3 25 25 H 1.09002 * 109.47134 * 304.21533 * 1 2 3 26 26 H 1.08995 * 109.47754 * 64.22248 * 1 2 3 27 27 H 1.09004 * 109.46888 * 240.00185 * 2 1 3 28 28 H 1.08994 * 109.47188 * 119.99808 * 2 1 3 29 29 H 0.96998 * 120.00487 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.61381 * 47.49994 * 14 13 3 31 31 H 1.09008 * 109.60465 * 167.99807 * 14 13 3 32 32 H 1.09002 * 109.77655 * 172.16997 * 15 14 13 33 33 H 1.08999 * 109.81046 * 51.40512 * 15 14 13 34 34 H 1.09005 * 109.43733 * 287.21811 * 16 15 14 35 35 H 1.08997 * 109.44648 * 167.33091 * 16 15 14 36 36 H 0.97006 * 119.99528 * 359.97438 * 19 18 17 37 37 H 0.97000 * 120.00547 * 180.02562 * 19 18 17 38 38 H 1.07994 * 120.10419 * 179.97438 * 20 18 17 39 39 H 1.08000 * 119.97977 * 180.14797 * 21 20 18 40 40 H 1.07994 * 119.71262 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6576 1.9630 0.8781 5 6 3.5466 1.4427 0.0323 6 1 4.1038 1.9042 -0.7695 7 6 4.2136 0.8536 1.0854 8 7 3.5350 0.2912 2.0615 9 14 6.0811 0.8544 1.1259 10 1 6.5757 2.2546 1.1262 11 1 6.5500 0.1630 2.3536 12 1 6.6024 0.1456 -0.0704 13 7 1.5761 2.1259 -1.2149 14 6 1.6484 1.2375 -2.3766 15 6 3.1219 1.0478 -2.7582 16 6 3.6457 2.3833 -3.2914 17 6 3.2383 3.4965 -2.3593 18 6 3.8815 4.7255 -2.4837 19 7 4.8776 4.8939 -3.4482 20 6 3.5375 5.7835 -1.6548 21 6 2.5512 5.6164 -0.7014 22 6 1.9138 4.4008 -0.5738 23 6 2.2555 3.3288 -1.4018 24 1 -0.3634 -1.0249 0.0757 25 1 -0.3633 0.5779 0.8498 26 1 -0.3634 0.4469 -0.9253 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 4.0042 -0.1229 2.8026 30 1 1.2081 0.2722 -2.1269 31 1 1.1086 1.6833 -3.2121 32 1 3.2074 0.2833 -3.5305 33 1 3.6956 0.7508 -1.8803 34 1 3.2278 2.5678 -4.2811 35 1 4.7329 2.3460 -3.3585 36 1 5.1201 4.1558 -4.0290 37 1 5.3275 5.7487 -3.5367 38 1 4.0390 6.7348 -1.7542 39 1 2.2794 6.4388 -0.0562 40 1 1.1440 4.2759 0.1733 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037906242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:49 Heat of formation + Delta-G solvation = 20.377662 kcal Electronic energy + Delta-G solvation = -20893.614967 eV Core-core repulsion = 18093.281122 eV Total energy + Delta-G solvation = -2800.333846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.60578 -38.70445 -35.53015 -35.28871 -33.75527 -32.24724 -30.66895 -28.96437 -28.67177 -25.79176 -24.66999 -23.79812 -22.43699 -21.30239 -19.98747 -18.55599 -18.05717 -17.80654 -16.83274 -16.25074 -15.99932 -15.65416 -15.14849 -14.89398 -14.62646 -14.44343 -13.96159 -13.59134 -13.48465 -13.30217 -13.08614 -12.98056 -12.83775 -12.48162 -12.38886 -12.24592 -12.17875 -11.77106 -11.52583 -11.24115 -11.20778 -11.02801 -10.72123 -10.35437 -9.69511 -8.58851 -8.15707 -7.93544 -6.13632 0.77941 0.96381 1.36674 1.39244 1.44876 2.42634 3.05746 3.19449 3.22452 3.51950 4.09146 4.12158 4.32413 4.42801 4.51141 4.60887 4.65699 4.69170 4.81887 4.84959 4.87803 4.93985 5.06153 5.10593 5.19512 5.21511 5.28269 5.41153 5.47725 5.63543 5.68693 5.74826 5.75789 5.85766 5.93672 6.01147 6.18592 6.26745 6.53114 6.70810 6.94993 7.06158 7.15976 7.51625 8.97445 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.010323 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.247237 B = 2711.716662 C = 3327.518404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C 0.235 3.765 4 H 0.000 1.000 5 C -0.533 4.533 6 H 0.073 0.927 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.935 3.065 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.508 5.508 14 C 0.057 3.943 15 C -0.178 4.178 16 C -0.054 4.054 17 C -0.213 4.213 18 C 0.220 3.780 19 N -0.869 5.869 20 C -0.237 4.237 21 C -0.068 4.068 22 C -0.207 4.207 23 C 0.185 3.815 24 H 0.050 0.950 25 H 0.032 0.968 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.259 0.741 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.400 0.600 37 H 0.405 0.595 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 5.608 -10.689 12.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.155 4.155 3 C 0.131 3.869 4 H 0.018 0.982 5 C -0.572 4.572 6 H 0.091 0.909 7 C -0.177 4.177 8 N -0.552 5.552 9 Si 0.762 3.238 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.224 5.224 14 C -0.070 4.070 15 C -0.216 4.216 16 C -0.091 4.091 17 C -0.220 4.220 18 C 0.115 3.885 19 N -0.410 5.410 20 C -0.260 4.260 21 C -0.088 4.088 22 C -0.229 4.229 23 C 0.087 3.913 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.230 0.770 37 H 0.235 0.765 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.324 5.551 -10.408 11.800 hybrid contribution 1.951 -0.236 0.367 2.000 sum 1.627 5.316 -10.041 11.477 Atomic orbital electron populations 1.21690 0.96298 1.00085 1.00951 1.21676 0.94407 0.97933 1.01442 1.19037 0.92096 0.90419 0.85310 0.98228 1.22168 0.93210 1.35245 1.06527 0.90915 1.25497 1.01070 0.95574 0.95509 1.69984 1.36129 1.38504 1.10609 0.85970 0.82691 0.77737 0.77427 1.20880 1.21270 1.19502 1.59062 1.53481 1.04151 1.05695 1.22230 0.95809 0.97377 0.91617 1.22589 0.98879 0.97146 1.02975 1.20160 0.99762 0.92359 0.96810 1.19473 1.01134 0.95688 1.05732 1.17662 0.88755 0.92604 0.89511 1.42376 1.41827 1.17557 1.39267 1.20560 1.04787 0.99068 1.01611 1.20812 0.94699 0.96416 0.96832 1.20808 1.04874 0.93821 1.03356 1.18311 0.89256 0.90813 0.92903 0.93092 0.94838 0.92353 0.93377 0.91529 0.93206 0.89450 0.91437 0.90818 0.89598 0.90690 0.91824 0.77006 0.76521 0.84602 0.84703 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 9.39 71.98 0.68 -4.45 16 2 C -0.12 -5.32 4.67 30.59 0.14 -5.18 16 3 C 0.24 11.59 1.83 44.17 0.08 11.67 16 4 H 0.00 -0.01 8.11 -2.39 -0.02 -0.03 16 5 C -0.53 -27.97 5.65 25.60 0.14 -27.82 16 6 H 0.07 3.82 4.21 -2.91 -0.01 3.80 16 7 C 0.02 1.24 5.30 84.65 0.45 1.69 16 8 N -0.91 -51.69 11.31 21.45 0.24 -51.45 16 9 Si 0.93 43.81 29.54 68.60 2.03 45.83 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 13 N -0.51 -21.81 4.22 -676.14 -2.85 -24.66 16 14 C 0.06 2.11 4.81 86.52 0.42 2.52 16 15 C -0.18 -6.39 5.46 30.74 0.17 -6.22 16 16 C -0.05 -1.76 4.68 29.89 0.14 -1.62 16 17 C -0.21 -8.02 4.71 -19.59 -0.09 -8.11 16 18 C 0.22 7.28 6.72 38.26 0.26 7.54 16 19 N -0.87 -20.90 8.97 -51.25 -0.46 -21.36 16 20 C -0.24 -7.62 9.89 22.38 0.22 -7.40 16 21 C -0.07 -2.40 10.03 22.17 0.22 -2.17 16 22 C -0.21 -8.60 9.55 22.53 0.22 -8.38 16 23 C 0.19 7.87 3.98 38.29 0.15 8.02 16 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 2.10 6.61 -2.39 -0.02 2.08 16 27 H 0.05 2.11 5.87 -2.39 -0.01 2.09 16 28 H 0.07 3.48 6.04 -2.39 -0.01 3.47 16 29 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.09 3.17 4.42 -2.39 -0.01 3.16 16 31 H 0.07 2.28 8.11 -2.38 -0.02 2.26 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.09 3.77 4.42 -2.39 -0.01 3.76 16 34 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.06 1.96 7.17 -2.39 -0.02 1.94 16 36 H 0.40 8.62 6.95 -92.70 -0.64 7.97 16 37 H 0.41 7.50 8.83 -92.71 -0.82 6.68 16 38 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 40 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -60.68 297.80 1.75 -58.92 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -0.39 Total: 32.64 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 3.19 Total: -39.92 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -3.07 Total: -97.47 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -60.68 1.75 -58.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037906242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.298 kcal (2) G-P(sol) polarization free energy of solvation -60.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds