Wall clock time and date at job start Mon Mar 30 2020 07:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47328 * 2 1 4 4 H 1.09005 * 109.47212 * 300.33720 * 3 2 1 5 5 C 1.50692 * 109.47536 * 180.33674 * 3 2 1 6 6 H 1.08007 * 119.99947 * 245.38345 * 5 3 2 7 7 C 1.37877 * 120.00234 * 65.37826 * 5 3 2 8 8 N 1.31514 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00010 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47039 * 60.00628 * 9 7 5 11 11 H 1.48501 * 109.46936 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47435 * 300.00021 * 9 7 5 13 13 N 1.46899 * 109.47010 * 60.32937 * 3 2 1 14 14 C 1.46429 * 111.00104 * 199.94584 * 13 3 2 15 15 C 1.53381 * 108.64919 * 287.84473 * 14 13 3 16 16 C 1.53047 * 107.91939 * 291.79706 * 15 14 13 17 17 C 1.50793 * 109.66399 * 47.25026 * 16 15 14 18 18 C 1.39276 * 118.12661 * 164.63370 * 17 16 15 19 19 N 1.39667 * 119.83263 * 359.66013 * 18 17 16 20 20 C 1.38744 * 120.33103 * 179.97438 * 18 17 16 21 21 C 1.38185 * 119.80072 * 359.39309 * 20 18 17 22 22 C 1.37848 * 120.03547 * 0.63060 * 21 20 18 23 23 C 1.38229 * 122.05612 * 344.39946 * 17 16 15 24 24 H 1.09005 * 109.46889 * 299.99667 * 1 2 3 25 25 H 1.09000 * 109.47216 * 59.99806 * 1 2 3 26 26 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46889 * 240.00333 * 2 1 3 28 28 H 1.09000 * 109.47216 * 120.00194 * 2 1 3 29 29 H 0.97000 * 119.99981 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.60190 * 168.09440 * 14 13 3 31 31 H 1.09004 * 109.60378 * 47.59761 * 14 13 3 32 32 H 1.08995 * 109.77149 * 172.19035 * 15 14 13 33 33 H 1.09005 * 109.81863 * 51.42857 * 15 14 13 34 34 H 1.08995 * 109.43509 * 287.18768 * 16 15 14 35 35 H 1.08995 * 109.43660 * 167.30944 * 16 15 14 36 36 H 0.96997 * 120.00414 * 0.02562 * 19 18 17 37 37 H 0.97002 * 119.99646 * 179.71962 * 19 18 17 38 38 H 1.07996 * 120.09992 * 179.64150 * 20 18 17 39 39 H 1.08004 * 119.98376 * 180.36216 * 21 20 18 40 40 H 1.08001 * 119.71487 * 179.81639 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6718 1.9581 -0.8870 5 6 3.5469 1.4426 -0.0083 6 1 4.0916 1.8305 0.8398 7 6 4.2303 0.9473 -1.0986 8 7 3.5671 0.4752 -2.1315 9 14 6.0983 0.9467 -1.1086 10 1 6.5991 0.1333 0.0284 11 1 6.5863 0.3666 -2.3855 12 1 6.5945 2.3401 -0.9769 13 7 1.5569 2.1327 1.2034 14 6 1.6060 3.5859 1.0303 15 6 3.0721 4.0350 1.0684 16 6 3.5929 3.8224 2.4917 17 6 3.2056 2.4471 2.9736 18 6 3.8515 1.9394 4.0983 19 7 4.8320 2.7001 4.7390 20 6 3.5304 0.6790 4.5814 21 6 2.5559 -0.0706 3.9505 22 6 1.9148 0.4283 2.8368 23 6 2.2369 1.6929 2.3384 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 4.0479 0.1264 -2.8983 30 1 1.0543 4.0691 1.8367 31 1 1.1658 3.8549 0.0701 32 1 3.1415 5.0902 0.8041 33 1 3.6591 3.4404 0.3683 34 1 3.1601 4.5736 3.1523 35 1 4.6788 3.9167 2.4984 36 1 5.0614 3.5798 4.4008 37 1 5.2805 2.3505 5.5249 38 1 4.0377 0.2866 5.4503 39 1 2.2995 -1.0496 4.3276 40 1 1.1561 -0.1632 2.3460 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037906243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:51 Heat of formation + Delta-G solvation = 32.588181 kcal Electronic energy + Delta-G solvation = -20962.949202 eV Core-core repulsion = 18163.144844 eV Total energy + Delta-G solvation = -2799.804358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07143 -36.93206 -34.44557 -33.50016 -31.90390 -30.42041 -29.50289 -27.51049 -26.78281 -24.10573 -22.80717 -22.40607 -20.75286 -20.11950 -18.41421 -16.86027 -16.44941 -15.95875 -15.30630 -14.63734 -14.48487 -13.99662 -13.53178 -13.22501 -12.99502 -12.97997 -12.54995 -12.19380 -11.87015 -11.61640 -11.53666 -11.20270 -11.07525 -10.94295 -10.71093 -10.65262 -10.38727 -9.88915 -9.88433 -9.71468 -9.52312 -9.43613 -8.90040 -8.36055 -8.16138 -7.02664 -6.69591 -6.01684 -4.07687 2.23598 2.43830 3.28519 3.33614 3.38120 4.33188 4.40215 4.60119 5.02214 5.25327 5.49309 5.53604 5.73101 5.82561 5.94761 6.05517 6.24028 6.28160 6.30941 6.39782 6.46462 6.48736 6.50859 6.59972 6.67319 6.69388 7.04324 7.09273 7.12909 7.23265 7.30258 7.31929 7.43773 7.46940 7.66808 7.81445 7.94510 8.05884 8.11912 8.19593 8.31349 8.63327 8.98655 9.55216 11.00649 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.010544 C = 0.008862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.643848 B = 2654.906973 C = 3158.918225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.223 3.777 4 H 0.045 0.955 5 C -0.539 4.539 6 H 0.074 0.926 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.883 3.117 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.505 5.505 14 C 0.071 3.929 15 C -0.179 4.179 16 C -0.058 4.058 17 C -0.195 4.195 18 C 0.221 3.779 19 N -0.885 5.885 20 C -0.234 4.234 21 C -0.072 4.072 22 C -0.179 4.179 23 C 0.213 3.787 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.026 0.974 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.261 0.739 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.122 0.878 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.392 0.608 37 H 0.390 0.610 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.957 3.596 9.311 10.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C 0.120 3.880 4 H 0.063 0.937 5 C -0.577 4.577 6 H 0.092 0.908 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.221 5.221 14 C -0.057 4.057 15 C -0.217 4.217 16 C -0.095 4.095 17 C -0.202 4.202 18 C 0.117 3.883 19 N -0.426 5.426 20 C -0.257 4.257 21 C -0.091 4.091 22 C -0.201 4.201 23 C 0.115 3.885 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.140 0.860 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.220 0.780 37 H 0.217 0.783 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.498 3.372 9.059 9.782 hybrid contribution 2.253 0.337 0.018 2.278 sum 0.755 3.709 9.078 9.835 Atomic orbital electron populations 1.21758 0.98844 0.98611 1.00748 1.21829 0.92254 0.99248 1.02421 1.19373 0.92998 0.90860 0.84738 0.93692 1.21904 0.92024 1.40822 1.02996 0.90776 1.24888 0.97840 0.95004 0.95567 1.69906 1.35251 1.40802 1.06326 0.86786 0.86486 0.78364 0.77248 1.20225 1.21342 1.20367 1.59169 1.52907 1.05851 1.04136 1.21920 0.95292 0.87907 1.00626 1.22706 0.99744 1.01234 0.98059 1.20141 0.99345 0.93186 0.96833 1.19233 1.01454 0.99754 0.99741 1.17500 0.88720 0.90709 0.91336 1.42441 1.44490 1.21129 1.34531 1.20178 1.05541 0.95348 1.04668 1.20531 0.95325 0.98163 0.95084 1.20988 1.04433 0.96546 0.98087 1.18073 0.87964 0.92230 0.90283 0.93025 0.94274 0.95438 0.89996 0.92912 0.92867 0.92659 0.91194 0.93272 0.86002 0.93035 0.92588 0.77955 0.78311 0.87707 0.87218 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.29 37.16 0.35 -2.47 16 2 C -0.12 -2.75 4.74 -26.73 -0.13 -2.88 16 3 C 0.22 5.31 1.60 -68.87 -0.11 5.20 16 4 H 0.05 1.18 7.69 -51.93 -0.40 0.78 16 5 C -0.54 -13.86 5.43 -34.44 -0.19 -14.05 16 6 H 0.07 1.94 4.39 -52.48 -0.23 1.71 16 7 C 0.07 1.86 5.32 -17.82 -0.09 1.77 16 8 N -0.88 -24.39 11.73 55.43 0.65 -23.74 16 9 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.51 -10.66 3.75 -165.07 -0.62 -11.28 16 14 C 0.07 1.35 5.81 -3.88 -0.02 1.32 16 15 C -0.18 -3.37 5.70 -26.51 -0.15 -3.53 16 16 C -0.06 -1.01 4.70 -27.81 -0.13 -1.14 16 17 C -0.19 -3.80 4.64 -104.19 -0.48 -4.28 16 18 C 0.22 3.92 6.72 -83.72 -0.56 3.35 16 19 N -0.89 -12.22 8.97 32.45 0.29 -11.93 16 20 C -0.23 -4.05 9.89 -39.41 -0.39 -4.44 16 21 C -0.07 -1.28 10.03 -39.74 -0.40 -1.68 16 22 C -0.18 -3.59 7.95 -39.18 -0.31 -3.91 16 23 C 0.21 4.46 3.96 -83.86 -0.33 4.13 16 24 H 0.05 0.99 7.19 -51.93 -0.37 0.62 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 2.12 6.50 -51.93 -0.34 1.78 16 28 H 0.05 1.22 4.95 -51.93 -0.26 0.97 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 31 H 0.07 1.31 7.77 -51.93 -0.40 0.90 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.12 2.74 4.50 -51.93 -0.23 2.50 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.94 7.18 -51.93 -0.37 0.57 16 36 H 0.39 4.95 6.95 -40.82 -0.28 4.67 16 37 H 0.39 4.39 8.83 -40.82 -0.36 4.03 16 38 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.13 2.48 5.25 -52.49 -0.28 2.20 16 LS Contribution 297.37 15.07 4.48 4.48 Total: -1.00 -27.66 297.37 -8.79 -36.45 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -5.62 Total: 12.49 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -2.96 Total: -22.60 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.32 Total: -46.95 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.66 -8.79 -36.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037906243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.039 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds