Wall clock time and date at job start Mon Mar 30 2020 07:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47328 * 2 1 4 4 H 1.09005 * 109.47212 * 300.33720 * 3 2 1 5 5 C 1.50692 * 109.47536 * 180.33674 * 3 2 1 6 6 H 1.08007 * 119.99947 * 245.38345 * 5 3 2 7 7 C 1.37877 * 120.00234 * 65.37826 * 5 3 2 8 8 N 1.31514 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00010 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47039 * 60.00628 * 9 7 5 11 11 H 1.48501 * 109.46936 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47435 * 300.00021 * 9 7 5 13 13 N 1.46899 * 109.47010 * 60.32937 * 3 2 1 14 14 C 1.46429 * 111.00104 * 199.94584 * 13 3 2 15 15 C 1.53381 * 108.64919 * 287.84473 * 14 13 3 16 16 C 1.53047 * 107.91939 * 291.79706 * 15 14 13 17 17 C 1.50793 * 109.66399 * 47.25026 * 16 15 14 18 18 C 1.39276 * 118.12661 * 164.63370 * 17 16 15 19 19 N 1.39667 * 119.83263 * 359.66013 * 18 17 16 20 20 C 1.38744 * 120.33103 * 179.97438 * 18 17 16 21 21 C 1.38185 * 119.80072 * 359.39309 * 20 18 17 22 22 C 1.37848 * 120.03547 * 0.63060 * 21 20 18 23 23 C 1.38229 * 122.05612 * 344.39946 * 17 16 15 24 24 H 1.09005 * 109.46889 * 299.99667 * 1 2 3 25 25 H 1.09000 * 109.47216 * 59.99806 * 1 2 3 26 26 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46889 * 240.00333 * 2 1 3 28 28 H 1.09000 * 109.47216 * 120.00194 * 2 1 3 29 29 H 0.97000 * 119.99981 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.60190 * 168.09440 * 14 13 3 31 31 H 1.09004 * 109.60378 * 47.59761 * 14 13 3 32 32 H 1.08995 * 109.77149 * 172.19035 * 15 14 13 33 33 H 1.09005 * 109.81863 * 51.42857 * 15 14 13 34 34 H 1.08995 * 109.43509 * 287.18768 * 16 15 14 35 35 H 1.08995 * 109.43660 * 167.30944 * 16 15 14 36 36 H 0.96997 * 120.00414 * 0.02562 * 19 18 17 37 37 H 0.97002 * 119.99646 * 179.71962 * 19 18 17 38 38 H 1.07996 * 120.09992 * 179.64150 * 20 18 17 39 39 H 1.08004 * 119.98376 * 180.36216 * 21 20 18 40 40 H 1.08001 * 119.71487 * 179.81639 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6718 1.9581 -0.8870 5 6 3.5469 1.4426 -0.0083 6 1 4.0916 1.8305 0.8398 7 6 4.2303 0.9473 -1.0986 8 7 3.5671 0.4752 -2.1315 9 14 6.0983 0.9467 -1.1086 10 1 6.5991 0.1333 0.0284 11 1 6.5863 0.3666 -2.3855 12 1 6.5945 2.3401 -0.9769 13 7 1.5569 2.1327 1.2034 14 6 1.6060 3.5859 1.0303 15 6 3.0721 4.0350 1.0684 16 6 3.5929 3.8224 2.4917 17 6 3.2056 2.4471 2.9736 18 6 3.8515 1.9394 4.0983 19 7 4.8320 2.7001 4.7390 20 6 3.5304 0.6790 4.5814 21 6 2.5559 -0.0706 3.9505 22 6 1.9148 0.4283 2.8368 23 6 2.2369 1.6929 2.3384 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 4.0479 0.1264 -2.8983 30 1 1.0543 4.0691 1.8367 31 1 1.1658 3.8549 0.0701 32 1 3.1415 5.0902 0.8041 33 1 3.6591 3.4404 0.3683 34 1 3.1601 4.5736 3.1523 35 1 4.6788 3.9167 2.4984 36 1 5.0614 3.5798 4.4008 37 1 5.2805 2.3505 5.5249 38 1 4.0377 0.2866 5.4503 39 1 2.2995 -1.0496 4.3276 40 1 1.1561 -0.1632 2.3460 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037906243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:51 Heat of formation + Delta-G solvation = 16.634745 kcal Electronic energy + Delta-G solvation = -20963.640995 eV Core-core repulsion = 18163.144844 eV Total energy + Delta-G solvation = -2800.496151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.57622 -38.41471 -35.94314 -35.10891 -33.70174 -31.99389 -30.94622 -29.01511 -28.51946 -25.72038 -24.49948 -23.88997 -22.27036 -21.77847 -19.93149 -18.61747 -17.82241 -17.51271 -16.90301 -16.33371 -16.02160 -15.49612 -15.14470 -14.79159 -14.62910 -14.40167 -14.15556 -13.66458 -13.46169 -13.19616 -13.13962 -13.01173 -12.84661 -12.52253 -12.43602 -12.25205 -12.10842 -11.51579 -11.40720 -11.29991 -11.21716 -11.07694 -10.75168 -10.36806 -9.69306 -8.56505 -8.11379 -7.96838 -6.12717 0.80514 1.00363 1.36325 1.38982 1.44631 2.42460 3.08391 3.20106 3.23910 3.50938 4.09466 4.11164 4.32039 4.44587 4.52646 4.65134 4.68227 4.76591 4.83179 4.87092 4.92573 4.93667 5.05401 5.10908 5.18129 5.20741 5.36613 5.43921 5.55620 5.65835 5.67190 5.74386 5.78186 5.91455 5.96036 5.97580 6.18038 6.30111 6.49881 6.72750 6.97264 7.06628 7.17083 7.51370 8.97699 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.010544 C = 0.008862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.643848 B = 2654.906973 C = 3158.918225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.113 4.113 3 C 0.233 3.767 4 H 0.012 0.988 5 C -0.530 4.530 6 H 0.071 0.929 7 C 0.023 3.977 8 N -0.914 5.914 9 Si 0.933 3.067 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.506 5.506 14 C 0.067 3.933 15 C -0.175 4.175 16 C -0.053 4.053 17 C -0.215 4.215 18 C 0.218 3.782 19 N -0.870 5.870 20 C -0.236 4.236 21 C -0.073 4.073 22 C -0.204 4.204 23 C 0.186 3.814 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.259 0.741 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.400 0.600 37 H 0.405 0.595 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.196 4.186 11.603 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.151 4.151 3 C 0.129 3.871 4 H 0.030 0.970 5 C -0.569 4.569 6 H 0.089 0.911 7 C -0.176 4.176 8 N -0.553 5.553 9 Si 0.761 3.239 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.222 5.222 14 C -0.061 4.061 15 C -0.214 4.214 16 C -0.090 4.090 17 C -0.222 4.222 18 C 0.112 3.888 19 N -0.412 5.412 20 C -0.259 4.259 21 C -0.093 4.093 22 C -0.225 4.225 23 C 0.088 3.912 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.229 0.771 37 H 0.234 0.766 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.710 3.987 11.390 12.088 hybrid contribution 2.027 0.184 -0.581 2.116 sum 1.317 4.171 10.809 11.660 Atomic orbital electron populations 1.21607 0.96364 0.99902 1.00757 1.21668 0.94446 0.98430 1.00601 1.19064 0.91976 0.91108 0.84965 0.97022 1.22103 0.93154 1.39247 1.02348 0.91142 1.25492 1.01035 0.95446 0.95669 1.70023 1.36238 1.42257 1.06815 0.85989 0.82791 0.78342 0.76817 1.20665 1.21319 1.19718 1.59078 1.53189 1.06637 1.03271 1.22010 0.95883 0.87083 1.01082 1.22547 0.98782 1.01839 0.98220 1.20141 0.99788 0.92980 0.96091 1.19489 1.01570 1.00587 1.00551 1.17654 0.88977 0.91207 0.90943 1.42376 1.43214 1.21066 1.34515 1.20559 1.05082 0.95081 1.05223 1.20860 0.94888 0.99264 0.94246 1.21094 1.05312 0.96675 0.99413 1.18260 0.89289 0.93192 0.90490 0.92361 0.94760 0.93492 0.93206 0.93142 0.93227 0.90748 0.91735 0.90983 0.89819 0.90716 0.91924 0.77092 0.76579 0.84829 0.84698 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 9.29 71.98 0.67 -4.46 16 2 C -0.11 -5.35 4.74 30.59 0.15 -5.21 16 3 C 0.23 11.38 1.60 44.17 0.07 11.45 16 4 H 0.01 0.65 7.69 -2.38 -0.02 0.63 16 5 C -0.53 -27.72 5.43 25.60 0.14 -27.58 16 6 H 0.07 3.70 4.39 -2.91 -0.01 3.69 16 7 C 0.02 1.25 5.32 84.65 0.45 1.70 16 8 N -0.91 -51.93 11.73 21.45 0.25 -51.68 16 9 Si 0.93 43.84 29.54 68.60 2.03 45.87 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.51 -21.44 3.75 -676.15 -2.54 -23.97 16 14 C 0.07 2.53 5.81 86.52 0.50 3.03 16 15 C -0.18 -6.43 5.70 30.74 0.18 -6.25 16 16 C -0.05 -1.73 4.70 29.89 0.14 -1.59 16 17 C -0.21 -7.99 4.64 -19.59 -0.09 -8.08 16 18 C 0.22 7.10 6.72 38.26 0.26 7.36 16 19 N -0.87 -20.89 8.97 -51.25 -0.46 -21.35 16 20 C -0.24 -7.43 9.89 22.38 0.22 -7.21 16 21 C -0.07 -2.48 10.03 22.16 0.22 -2.25 16 22 C -0.20 -8.01 7.95 22.53 0.18 -7.83 16 23 C 0.19 7.64 3.96 38.28 0.15 7.79 16 24 H 0.06 2.23 7.19 -2.38 -0.02 2.21 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 2.66 6.50 -2.38 -0.02 2.65 16 28 H 0.05 2.39 4.95 -2.39 -0.01 2.38 16 29 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.07 2.50 8.11 -2.39 -0.02 2.48 16 31 H 0.06 2.44 7.77 -2.39 -0.02 2.42 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 33 H 0.08 3.77 4.50 -2.38 -0.01 3.76 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 1.95 7.18 -2.39 -0.02 1.93 16 36 H 0.40 8.65 6.95 -92.71 -0.64 8.01 16 37 H 0.40 7.49 8.83 -92.71 -0.82 6.67 16 38 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16 39 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 40 H 0.12 4.65 5.25 -2.91 -0.02 4.64 16 Total: -1.00 -60.03 297.37 2.12 -57.91 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.39 Total: 32.36 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 3.23 Total: -39.14 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -2.74 Total: -97.00 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -60.03 2.12 -57.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037906243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.548 kcal (2) G-P(sol) polarization free energy of solvation -60.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds