Wall clock time and date at job start Mon Mar 30 2020 07:22:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53001 * 109.47328 * 2 1
4 4 H 1.09005 * 109.47212 * 300.33720 * 3 2 1
5 5 C 1.50692 * 109.47536 * 180.33674 * 3 2 1
6 6 H 1.08007 * 119.99947 * 245.38345 * 5 3 2
7 7 C 1.37877 * 120.00234 * 65.37826 * 5 3 2
8 8 N 1.31514 * 120.00000 * 0.02562 * 7 5 3
9 9 Si 1.86802 * 120.00010 * 180.02562 * 7 5 3
10 10 H 1.48497 * 109.47039 * 60.00628 * 9 7 5
11 11 H 1.48501 * 109.46936 * 180.02562 * 9 7 5
12 12 H 1.48494 * 109.47435 * 300.00021 * 9 7 5
13 13 N 1.46899 * 109.47010 * 60.32937 * 3 2 1
14 14 C 1.46429 * 111.00104 * 199.94584 * 13 3 2
15 15 C 1.53381 * 108.64919 * 287.84473 * 14 13 3
16 16 C 1.53047 * 107.91939 * 291.79706 * 15 14 13
17 17 C 1.50793 * 109.66399 * 47.25026 * 16 15 14
18 18 C 1.39276 * 118.12661 * 164.63370 * 17 16 15
19 19 N 1.39667 * 119.83263 * 359.66013 * 18 17 16
20 20 C 1.38744 * 120.33103 * 179.97438 * 18 17 16
21 21 C 1.38185 * 119.80072 * 359.39309 * 20 18 17
22 22 C 1.37848 * 120.03547 * 0.63060 * 21 20 18
23 23 C 1.38229 * 122.05612 * 344.39946 * 17 16 15
24 24 H 1.09005 * 109.46889 * 299.99667 * 1 2 3
25 25 H 1.09000 * 109.47216 * 59.99806 * 1 2 3
26 26 H 1.09000 * 109.46948 * 179.97438 * 1 2 3
27 27 H 1.09005 * 109.46889 * 240.00333 * 2 1 3
28 28 H 1.09000 * 109.47216 * 120.00194 * 2 1 3
29 29 H 0.97000 * 119.99981 * 180.02562 * 8 7 5
30 30 H 1.09003 * 109.60190 * 168.09440 * 14 13 3
31 31 H 1.09004 * 109.60378 * 47.59761 * 14 13 3
32 32 H 1.08995 * 109.77149 * 172.19035 * 15 14 13
33 33 H 1.09005 * 109.81863 * 51.42857 * 15 14 13
34 34 H 1.08995 * 109.43509 * 287.18768 * 16 15 14
35 35 H 1.08995 * 109.43660 * 167.30944 * 16 15 14
36 36 H 0.96997 * 120.00414 * 0.02562 * 19 18 17
37 37 H 0.97002 * 119.99646 * 179.71962 * 19 18 17
38 38 H 1.07996 * 120.09992 * 179.64150 * 20 18 17
39 39 H 1.08004 * 119.98376 * 180.36216 * 21 20 18
40 40 H 1.08001 * 119.71487 * 179.81639 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6718 1.9581 -0.8870
5 6 3.5469 1.4426 -0.0083
6 1 4.0916 1.8305 0.8398
7 6 4.2303 0.9473 -1.0986
8 7 3.5671 0.4752 -2.1315
9 14 6.0983 0.9467 -1.1086
10 1 6.5991 0.1333 0.0284
11 1 6.5863 0.3666 -2.3855
12 1 6.5945 2.3401 -0.9769
13 7 1.5569 2.1327 1.2034
14 6 1.6060 3.5859 1.0303
15 6 3.0721 4.0350 1.0684
16 6 3.5929 3.8224 2.4917
17 6 3.2056 2.4471 2.9736
18 6 3.8515 1.9394 4.0983
19 7 4.8320 2.7001 4.7390
20 6 3.5304 0.6790 4.5814
21 6 2.5559 -0.0706 3.9505
22 6 1.9148 0.4283 2.8368
23 6 2.2369 1.6929 2.3384
24 1 -0.3633 0.5138 0.8901
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 1.8933 -0.5138 -0.8901
28 1 1.8933 -0.5139 0.8900
29 1 4.0479 0.1264 -2.8983
30 1 1.0543 4.0691 1.8367
31 1 1.1658 3.8549 0.0701
32 1 3.1415 5.0902 0.8041
33 1 3.6591 3.4404 0.3683
34 1 3.1601 4.5736 3.1523
35 1 4.6788 3.9167 2.4984
36 1 5.0614 3.5798 4.4008
37 1 5.2805 2.3505 5.5249
38 1 4.0377 0.2866 5.4503
39 1 2.2995 -1.0496 4.3276
40 1 1.1561 -0.1632 2.3460
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000037906243.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:22:51
Heat of formation + Delta-G solvation = 16.634745 kcal
Electronic energy + Delta-G solvation = -20963.640995 eV
Core-core repulsion = 18163.144844 eV
Total energy + Delta-G solvation = -2800.496151 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.57622 -38.41471 -35.94314 -35.10891 -33.70174 -31.99389 -30.94622 -29.01511
-28.51946 -25.72038 -24.49948 -23.88997 -22.27036 -21.77847 -19.93149 -18.61747
-17.82241 -17.51271 -16.90301 -16.33371 -16.02160 -15.49612 -15.14470 -14.79159
-14.62910 -14.40167 -14.15556 -13.66458 -13.46169 -13.19616 -13.13962 -13.01173
-12.84661 -12.52253 -12.43602 -12.25205 -12.10842 -11.51579 -11.40720 -11.29991
-11.21716 -11.07694 -10.75168 -10.36806 -9.69306 -8.56505 -8.11379 -7.96838
-6.12717 0.80514 1.00363 1.36325 1.38982 1.44631 2.42460 3.08391
3.20106 3.23910 3.50938 4.09466 4.11164 4.32039 4.44587 4.52646
4.65134 4.68227 4.76591 4.83179 4.87092 4.92573 4.93667 5.05401
5.10908 5.18129 5.20741 5.36613 5.43921 5.55620 5.65835 5.67190
5.74386 5.78186 5.91455 5.96036 5.97580 6.18038 6.30111 6.49881
6.72750 6.97264 7.06628 7.17083 7.51370 8.97699
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.015659 B = 0.010544 C = 0.008862
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1787.643848 B = 2654.906973 C = 3158.918225
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.113 4.113
3 C 0.233 3.767
4 H 0.012 0.988
5 C -0.530 4.530
6 H 0.071 0.929
7 C 0.023 3.977
8 N -0.914 5.914
9 Si 0.933 3.067
10 H -0.281 1.281
11 H -0.288 1.288
12 H -0.272 1.272
13 N -0.506 5.506
14 C 0.067 3.933
15 C -0.175 4.175
16 C -0.053 4.053
17 C -0.215 4.215
18 C 0.218 3.782
19 N -0.870 5.870
20 C -0.236 4.236
21 C -0.073 4.073
22 C -0.204 4.204
23 C 0.186 3.814
24 H 0.057 0.943
25 H 0.033 0.967
26 H 0.046 0.954
27 H 0.049 0.951
28 H 0.050 0.950
29 H 0.259 0.741
30 H 0.074 0.926
31 H 0.064 0.936
32 H 0.072 0.928
33 H 0.084 0.916
34 H 0.075 0.925
35 H 0.062 0.938
36 H 0.400 0.600
37 H 0.405 0.595
38 H 0.134 0.866
39 H 0.135 0.865
40 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.196 4.186 11.603 12.336
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.151 4.151
3 C 0.129 3.871
4 H 0.030 0.970
5 C -0.569 4.569
6 H 0.089 0.911
7 C -0.176 4.176
8 N -0.553 5.553
9 Si 0.761 3.239
10 H -0.207 1.207
11 H -0.213 1.213
12 H -0.197 1.197
13 N -0.222 5.222
14 C -0.061 4.061
15 C -0.214 4.214
16 C -0.090 4.090
17 C -0.222 4.222
18 C 0.112 3.888
19 N -0.412 5.412
20 C -0.259 4.259
21 C -0.093 4.093
22 C -0.225 4.225
23 C 0.088 3.912
24 H 0.076 0.924
25 H 0.052 0.948
26 H 0.065 0.935
27 H 0.068 0.932
28 H 0.069 0.931
29 H 0.068 0.932
30 H 0.093 0.907
31 H 0.083 0.917
32 H 0.090 0.910
33 H 0.102 0.898
34 H 0.093 0.907
35 H 0.081 0.919
36 H 0.229 0.771
37 H 0.234 0.766
38 H 0.152 0.848
39 H 0.153 0.847
40 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -0.710 3.987 11.390 12.088
hybrid contribution 2.027 0.184 -0.581 2.116
sum 1.317 4.171 10.809 11.660
Atomic orbital electron populations
1.21607 0.96364 0.99902 1.00757 1.21668 0.94446 0.98430 1.00601
1.19064 0.91976 0.91108 0.84965 0.97022 1.22103 0.93154 1.39247
1.02348 0.91142 1.25492 1.01035 0.95446 0.95669 1.70023 1.36238
1.42257 1.06815 0.85989 0.82791 0.78342 0.76817 1.20665 1.21319
1.19718 1.59078 1.53189 1.06637 1.03271 1.22010 0.95883 0.87083
1.01082 1.22547 0.98782 1.01839 0.98220 1.20141 0.99788 0.92980
0.96091 1.19489 1.01570 1.00587 1.00551 1.17654 0.88977 0.91207
0.90943 1.42376 1.43214 1.21066 1.34515 1.20559 1.05082 0.95081
1.05223 1.20860 0.94888 0.99264 0.94246 1.21094 1.05312 0.96675
0.99413 1.18260 0.89289 0.93192 0.90490 0.92361 0.94760 0.93492
0.93206 0.93142 0.93227 0.90748 0.91735 0.90983 0.89819 0.90716
0.91924 0.77092 0.76579 0.84829 0.84698 0.86470
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.13 9.29 71.98 0.67 -4.46 16
2 C -0.11 -5.35 4.74 30.59 0.15 -5.21 16
3 C 0.23 11.38 1.60 44.17 0.07 11.45 16
4 H 0.01 0.65 7.69 -2.38 -0.02 0.63 16
5 C -0.53 -27.72 5.43 25.60 0.14 -27.58 16
6 H 0.07 3.70 4.39 -2.91 -0.01 3.69 16
7 C 0.02 1.25 5.32 84.65 0.45 1.70 16
8 N -0.91 -51.93 11.73 21.45 0.25 -51.68 16
9 Si 0.93 43.84 29.54 68.60 2.03 45.87 16
10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16
11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16
12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16
13 N -0.51 -21.44 3.75 -676.15 -2.54 -23.97 16
14 C 0.07 2.53 5.81 86.52 0.50 3.03 16
15 C -0.18 -6.43 5.70 30.74 0.18 -6.25 16
16 C -0.05 -1.73 4.70 29.89 0.14 -1.59 16
17 C -0.21 -7.99 4.64 -19.59 -0.09 -8.08 16
18 C 0.22 7.10 6.72 38.26 0.26 7.36 16
19 N -0.87 -20.89 8.97 -51.25 -0.46 -21.35 16
20 C -0.24 -7.43 9.89 22.38 0.22 -7.21 16
21 C -0.07 -2.48 10.03 22.16 0.22 -2.25 16
22 C -0.20 -8.01 7.95 22.53 0.18 -7.83 16
23 C 0.19 7.64 3.96 38.28 0.15 7.79 16
24 H 0.06 2.23 7.19 -2.38 -0.02 2.21 16
25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16
26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16
27 H 0.05 2.66 6.50 -2.38 -0.02 2.65 16
28 H 0.05 2.39 4.95 -2.39 -0.01 2.38 16
29 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16
30 H 0.07 2.50 8.11 -2.39 -0.02 2.48 16
31 H 0.06 2.44 7.77 -2.39 -0.02 2.42 16
32 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16
33 H 0.08 3.77 4.50 -2.38 -0.01 3.76 16
34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16
35 H 0.06 1.95 7.18 -2.39 -0.02 1.93 16
36 H 0.40 8.65 6.95 -92.71 -0.64 8.01 16
37 H 0.40 7.49 8.83 -92.71 -0.82 6.67 16
38 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16
39 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16
40 H 0.12 4.65 5.25 -2.91 -0.02 4.64 16
Total: -1.00 -60.03 297.37 2.12 -57.91
By element:
Atomic # 1 Polarization: 32.75 SS G_CDS: -0.39 Total: 32.36 kcal
Atomic # 6 Polarization: -42.37 SS G_CDS: 3.23 Total: -39.14 kcal
Atomic # 7 Polarization: -94.26 SS G_CDS: -2.74 Total: -97.00 kcal
Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal
Total: -60.03 2.12 -57.91 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037906243.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.548 kcal
(2) G-P(sol) polarization free energy of solvation -60.032 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.516 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.913 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.635 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds