Wall clock time and date at job start Mon Mar 30 2020 06:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00065 * 2 1 4 4 H 1.48500 * 109.47246 * 240.00306 * 3 2 1 5 5 H 1.48497 * 109.47325 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46845 * 120.00393 * 3 2 1 7 7 C 1.37878 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00500 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46899 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46986 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.47235 * 179.97438 * 11 10 9 13 13 C 1.47158 * 111.00321 * 170.96388 * 12 11 10 14 14 C 1.52895 * 108.49804 * 52.21814 * 13 12 11 15 15 C 1.50697 * 110.02648 * 50.16825 * 14 13 12 16 16 C 1.39342 * 118.50459 * 162.96888 * 15 14 13 17 17 N 1.39675 * 119.90634 * 0.04006 * 16 15 14 18 18 C 1.38724 * 120.19154 * 179.76446 * 16 15 14 19 19 C 1.38131 * 119.74326 * 0.30180 * 18 16 15 20 20 C 1.38053 * 119.95150 * 0.09597 * 19 18 16 21 21 C 1.37700 * 121.69564 * 343.46069 * 15 14 13 22 22 C 1.46630 * 110.99856 * 293.95637 * 12 11 10 23 23 H 0.96998 * 119.99713 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47326 * 60.00625 * 9 7 2 25 25 H 1.09000 * 109.47474 * 300.00079 * 9 7 2 26 26 H 1.08999 * 109.47688 * 59.99948 * 10 9 7 27 27 H 1.09002 * 109.47061 * 299.99845 * 10 9 7 28 28 H 1.08997 * 109.47291 * 59.99904 * 11 10 9 29 29 H 1.09002 * 109.47086 * 299.99820 * 11 10 9 30 30 H 1.09000 * 109.63822 * 171.92528 * 13 12 11 31 31 H 1.09002 * 109.62712 * 292.31792 * 13 12 11 32 32 H 1.09007 * 109.38889 * 170.52656 * 14 13 12 33 33 H 1.09007 * 109.39166 * 290.32147 * 14 13 12 34 34 H 0.96999 * 120.00193 * 179.72832 * 17 16 15 35 35 H 0.97005 * 119.99698 * 359.72515 * 17 16 15 36 36 H 1.07993 * 120.12479 * 180.32758 * 18 16 15 37 37 H 1.08001 * 120.01931 * 180.11245 * 19 18 16 38 38 H 1.08001 * 119.73084 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.27065 * 168.86829 * 22 12 11 40 40 H 1.08997 * 109.24413 * 49.37660 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 1.7462 -7.3864 0.2133 14 6 0.6045 -7.4995 -0.7973 15 6 1.1130 -7.2064 -2.1853 16 6 0.3379 -7.6000 -3.2743 17 7 -0.8804 -8.2497 -3.0634 18 6 0.7701 -7.3434 -4.5673 19 6 1.9758 -6.7011 -4.7720 20 6 2.7457 -6.3196 -3.6915 21 6 2.3180 -6.5742 -2.3958 22 6 3.1987 -6.1413 -1.2529 23 1 -0.4849 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6044 0.8894 27 1 2.8719 -3.6043 -0.8906 28 1 0.8539 -5.0446 -0.8913 29 1 0.8533 -5.0451 0.8886 30 1 2.4477 -8.2077 0.0670 31 1 1.3470 -7.4221 1.2270 32 1 0.1920 -8.5080 -0.7658 33 1 -0.1756 -6.7815 -0.5440 34 1 -1.4229 -8.5207 -3.8205 35 1 -1.1840 -8.4298 -2.1599 36 1 0.1661 -7.6441 -5.4104 37 1 2.3157 -6.4975 -5.7767 38 1 3.6880 -5.8180 -3.8557 39 1 4.0249 -6.8446 -1.1489 40 1 3.5960 -5.1479 -1.4611 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038032882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:11 Heat of formation + Delta-G solvation = -6.881980 kcal Electronic energy + Delta-G solvation = -19463.108964 eV Core-core repulsion = 16661.593051 eV Total energy + Delta-G solvation = -2801.515913 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.48139 -38.66090 -35.87054 -35.66305 -33.83945 -31.94777 -31.61390 -29.05631 -28.46996 -25.96717 -24.79850 -23.60109 -22.57076 -21.94134 -20.05791 -18.43417 -18.12559 -17.51781 -16.72070 -16.50953 -16.33249 -16.01089 -15.96058 -15.09907 -14.78620 -14.43995 -14.39934 -14.19069 -13.71990 -13.51710 -13.14153 -12.96789 -12.83613 -12.65513 -12.51812 -12.35425 -12.25111 -12.19860 -11.55618 -11.44483 -11.31972 -11.26091 -11.06065 -10.53782 -9.45899 -9.24451 -8.35472 -8.19111 -6.30290 0.49437 0.72044 1.40054 1.43809 1.51601 2.41822 2.90937 2.98299 3.11132 3.13838 3.82254 3.87997 4.05878 4.15945 4.20560 4.27348 4.37608 4.52295 4.61441 4.62582 4.70875 4.76236 4.84730 4.92941 4.97328 5.01310 5.04725 5.12188 5.23093 5.26633 5.44177 5.52582 5.66750 5.71685 5.77497 5.86351 6.02072 6.12517 6.19732 6.28784 6.60606 6.86121 6.98757 7.38815 8.92886 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.004694 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.857742 B = 5964.238083 C = 6225.905465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.029 3.971 10 C -0.090 4.090 11 C 0.068 3.932 12 N -0.530 5.530 13 C 0.054 3.946 14 C -0.103 4.103 15 C -0.172 4.172 16 C 0.208 3.792 17 N -0.869 5.869 18 C -0.216 4.216 19 C -0.080 4.080 20 C -0.191 4.191 21 C -0.076 4.076 22 C 0.086 3.914 23 H 0.263 0.737 24 H -0.016 1.016 25 H -0.009 1.009 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.406 0.594 35 H 0.402 0.598 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 -19.524 -6.351 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.009 4.009 10 C -0.128 4.128 11 C -0.059 4.059 12 N -0.251 5.251 13 C -0.074 4.074 14 C -0.142 4.142 15 C -0.177 4.177 16 C 0.103 3.897 17 N -0.409 5.409 18 C -0.238 4.238 19 C -0.099 4.099 20 C -0.212 4.212 21 C -0.078 4.078 22 C -0.042 4.042 23 H 0.072 0.928 24 H 0.002 0.998 25 H 0.010 0.990 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.236 0.764 35 H 0.232 0.768 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.142 0.858 39 H 0.121 0.879 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.937 -19.335 -5.922 20.314 hybrid contribution -0.898 0.849 -0.761 1.451 sum 1.039 -18.486 -6.683 19.684 Atomic orbital electron populations 1.70101 1.07868 1.27807 1.51764 1.25998 0.95770 1.03404 0.94666 0.85494 0.78291 0.77983 0.79257 1.19185 1.20727 1.19013 1.21658 0.93511 0.92345 1.50502 0.92236 1.18930 0.94338 0.93220 0.94369 1.21411 0.97983 0.92900 1.00490 1.21987 0.93825 0.90429 0.99704 1.62662 1.26074 1.03400 1.32963 1.22288 0.94957 0.91263 0.98877 1.20863 0.99322 1.02217 0.91765 1.19172 0.96602 1.07093 0.94830 1.17844 0.87014 0.91690 0.93191 1.42464 1.20457 1.66518 1.11499 1.20781 0.99659 1.08226 0.95178 1.21079 0.93722 0.95728 0.99336 1.21051 1.02156 1.05897 0.92093 1.20313 0.95068 0.96224 0.96205 1.21246 0.95571 1.02227 0.85203 0.92790 0.99781 0.99046 0.92763 0.93426 0.95821 0.91543 0.89348 0.89251 0.88991 0.92178 0.76397 0.76772 0.84556 0.84281 0.85751 0.87933 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.55 13.29 21.45 0.28 -58.26 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.54 -32.09 9.11 25.60 0.23 -31.86 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.61 4.97 29.85 0.15 1.76 16 10 C -0.09 -3.97 5.10 30.60 0.16 -3.81 16 11 C 0.07 2.52 3.96 86.30 0.34 2.87 16 12 N -0.53 -16.00 5.02 -901.15 -4.53 -20.53 16 13 C 0.05 1.28 6.03 86.22 0.52 1.80 16 14 C -0.10 -2.41 4.35 29.81 0.13 -2.28 16 15 C -0.17 -4.68 5.06 -19.73 -0.10 -4.78 16 16 C 0.21 5.11 6.73 38.27 0.26 5.36 16 17 N -0.87 -15.20 8.97 -51.22 -0.46 -15.66 16 18 C -0.22 -5.09 9.89 22.36 0.22 -4.87 16 19 C -0.08 -1.96 10.04 22.20 0.22 -1.74 16 20 C -0.19 -5.24 9.64 22.36 0.22 -5.03 16 21 C -0.08 -2.20 5.21 -19.87 -0.10 -2.30 16 22 C 0.09 2.45 5.43 85.59 0.46 2.92 16 23 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 24 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 26 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.05 2.08 6.35 -2.39 -0.02 2.06 16 28 H 0.02 0.94 5.86 -2.39 -0.01 0.92 16 29 H 0.07 2.43 8.09 -2.39 -0.02 2.41 16 30 H 0.09 1.83 8.05 -2.39 -0.02 1.81 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.09 1.64 7.12 -2.38 -0.02 1.62 16 33 H 0.06 1.58 7.04 -2.38 -0.02 1.57 16 34 H 0.41 5.27 8.84 -92.71 -0.82 4.45 16 35 H 0.40 6.10 6.96 -92.70 -0.65 5.45 16 36 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.12 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.08 2.52 6.03 -2.39 -0.01 2.50 16 Total: -1.00 -69.16 314.38 0.07 -69.09 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.42 Total: 19.55 kcal Atomic # 6 Polarization: -44.73 SS G_CDS: 3.17 Total: -41.56 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -4.70 Total: -94.45 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.16 0.07 -69.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038032882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.205 kcal (2) G-P(sol) polarization free energy of solvation -69.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds