Wall clock time and date at job start Mon Mar 30 2020 07:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47446 * 2 1 4 4 H 1.09003 * 109.47807 * 178.44460 * 3 2 1 5 5 C 1.50702 * 109.47280 * 298.44725 * 3 2 1 6 6 H 1.07996 * 120.00731 * 119.99803 * 5 3 2 7 7 C 1.37879 * 119.99418 * 299.99603 * 5 3 2 8 8 N 1.31516 * 120.00295 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99815 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47068 * 89.99958 * 9 7 5 11 11 H 1.48493 * 109.47058 * 210.00015 * 9 7 5 12 12 H 1.48496 * 109.47022 * 330.00123 * 9 7 5 13 13 N 1.46909 * 109.46859 * 58.44045 * 3 2 1 14 14 C 1.47161 * 110.99930 * 179.52903 * 13 3 2 15 15 C 1.52893 * 108.48878 * 165.36472 * 14 13 3 16 16 C 1.50704 * 109.95601 * 50.40516 * 15 14 13 17 17 C 1.39340 * 118.49405 * 163.24673 * 16 15 14 18 18 N 1.39671 * 119.90095 * 359.62201 * 17 16 15 19 19 C 1.38710 * 120.19285 * 179.59864 * 17 16 15 20 20 C 1.38130 * 119.74526 * 0.02562 * 19 17 16 21 21 C 1.38063 * 119.94781 * 0.08840 * 20 19 17 22 22 C 1.37703 * 121.69891 * 343.01393 * 16 15 14 23 23 C 1.46624 * 110.99477 * 56.51942 * 13 3 2 24 24 H 1.09005 * 109.46819 * 55.49508 * 1 2 3 25 25 H 1.08996 * 109.47405 * 295.50200 * 1 2 3 26 26 H 1.09002 * 109.47119 * 175.49429 * 1 2 3 27 27 H 1.09003 * 109.47444 * 119.99914 * 2 1 3 28 28 H 1.09004 * 109.47538 * 240.00295 * 2 1 3 29 29 H 0.96996 * 119.99757 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.63432 * 285.06555 * 14 13 3 31 31 H 1.08998 * 109.63186 * 45.66030 * 14 13 3 32 32 H 1.09000 * 109.38826 * 290.25990 * 15 14 13 33 33 H 1.08998 * 109.31535 * 170.50444 * 15 14 13 34 34 H 0.97005 * 120.00498 * 0.02562 * 18 17 16 35 35 H 0.97005 * 120.00159 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.13156 * 180.02562 * 19 17 16 37 37 H 1.07989 * 120.02866 * 180.11330 * 20 19 17 38 38 H 1.08003 * 119.72572 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.26827 * 296.17796 * 23 13 3 40 40 H 1.09000 * 109.27396 * 55.68465 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4427 0.0279 5 6 1.5694 2.1417 -1.2493 6 1 0.9463 3.0206 -1.1741 7 6 1.9345 1.6594 -2.4883 8 7 2.6937 0.5894 -2.5799 9 14 1.3506 2.5257 -4.0369 10 1 2.3385 3.5641 -4.4255 11 1 1.2140 1.5364 -5.1359 12 1 0.0352 3.1652 -3.7803 13 7 1.5198 2.1458 1.1802 14 6 1.9999 3.5363 1.2197 15 6 1.1574 4.3116 2.2329 16 6 1.1021 3.5601 3.5381 17 6 0.6949 4.2437 4.6820 18 7 0.3574 5.5966 4.6015 19 6 0.6232 3.5843 5.9002 20 6 0.9578 2.2462 5.9760 21 6 1.3632 1.5719 4.8415 22 6 1.4373 2.2270 3.6202 23 6 1.8894 1.4456 2.4143 24 1 -0.3633 0.5822 -0.8469 25 1 -0.3634 0.4424 0.9275 26 1 -0.3633 -1.0245 -0.0807 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.9501 0.2499 -3.4515 30 1 3.0465 3.5540 1.5237 31 1 1.8944 3.9882 0.2334 32 1 0.1468 4.4356 1.8437 33 1 1.6042 5.2919 2.3984 34 1 0.4064 6.0590 3.7501 35 1 0.0734 6.0738 5.3969 36 1 0.3071 4.1149 6.7861 37 1 0.9019 1.7279 6.9217 38 1 1.6243 0.5258 4.9050 39 1 1.4182 0.4628 2.4252 40 1 2.9723 1.3257 2.4494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038032915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:45 Heat of formation + Delta-G solvation = 23.510303 kcal Electronic energy + Delta-G solvation = -20001.646157 eV Core-core repulsion = 17201.448153 eV Total energy + Delta-G solvation = -2800.198004 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.81734 -37.22752 -34.54365 -33.90801 -31.69160 -30.29957 -30.01379 -27.61493 -26.62454 -24.02177 -23.50812 -22.28419 -21.16000 -19.64128 -18.63761 -16.94409 -16.48938 -15.98589 -15.23990 -15.07055 -14.41930 -14.13787 -13.98056 -13.47232 -13.27986 -12.96202 -12.66280 -12.39330 -12.30884 -11.76192 -11.47691 -11.41917 -11.08837 -10.92331 -10.83006 -10.59307 -10.42377 -10.24181 -9.99293 -9.87602 -9.62770 -9.32670 -8.77898 -8.39788 -8.18090 -7.28853 -7.09468 -5.99206 -4.02552 1.74610 1.90931 3.30634 3.38027 3.41516 4.01618 4.15142 4.41528 4.98395 5.11937 5.15400 5.32259 5.40212 5.59668 5.74423 5.82770 5.92393 6.01132 6.14504 6.21438 6.23075 6.39527 6.52226 6.56423 6.61077 6.68329 6.76948 6.81986 6.85150 7.09348 7.13722 7.16914 7.34525 7.45154 7.68449 7.69147 7.78939 7.85121 7.88067 8.20624 8.36970 8.61866 9.02655 9.61175 11.07255 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.029596 B = 0.005769 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.860828 B = 4852.508825 C = 5480.209763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.215 3.785 4 H -0.002 1.002 5 C -0.495 4.495 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.521 5.521 14 C 0.060 3.940 15 C -0.068 4.068 16 C -0.136 4.136 17 C 0.210 3.790 18 N -0.881 5.881 19 C -0.212 4.212 20 C -0.080 4.080 21 C -0.178 4.178 22 C -0.019 4.019 23 C 0.087 3.913 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.015 0.985 27 H 0.013 0.987 28 H 0.092 0.908 29 H 0.260 0.740 30 H 0.020 0.980 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.397 0.603 35 H 0.393 0.607 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 5.712 13.232 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.110 3.890 4 H 0.015 0.985 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.245 5.245 14 C -0.068 4.068 15 C -0.105 4.105 16 C -0.141 4.141 17 C 0.107 3.893 18 N -0.421 5.421 19 C -0.235 4.235 20 C -0.099 4.099 21 C -0.199 4.199 22 C -0.020 4.020 23 C -0.042 4.042 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.226 0.774 35 H 0.220 0.780 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.104 0.896 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.279 5.546 13.026 14.533 hybrid contribution 0.507 0.704 -0.707 1.119 sum -2.772 6.250 12.319 14.089 Atomic orbital electron populations 1.21476 0.97236 0.97617 1.01557 1.21579 0.95213 0.98139 1.00161 1.19311 0.92554 0.90896 0.86287 0.98477 1.21035 1.30914 1.11864 0.89556 0.91951 1.24896 0.95232 0.95078 0.98889 1.69876 1.36520 1.22623 1.24120 0.86583 0.79134 0.79262 0.82951 1.20889 1.21330 1.19872 1.62410 1.59311 1.01213 1.01608 1.21996 0.94671 0.90836 0.99346 1.20385 1.01164 0.96769 0.92196 1.19133 1.06787 0.94232 0.93946 1.17718 0.93775 0.84438 0.93405 1.42493 1.77968 1.08447 1.13229 1.20371 1.11552 0.95742 0.95793 1.20660 0.97761 0.93721 0.97781 1.20801 1.06673 0.99980 0.92404 1.19618 0.95097 0.92677 0.94652 1.21021 0.97453 0.97408 0.88285 0.92183 0.94070 0.96569 0.96810 0.88931 0.93028 0.96155 0.89016 0.90787 0.92367 0.77374 0.78004 0.87011 0.86741 0.86752 0.89560 0.94640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.47 37.15 0.35 -2.34 16 2 C -0.11 -2.68 4.98 -26.73 -0.13 -2.81 16 3 C 0.22 5.29 1.74 -68.86 -0.12 5.17 16 4 H 0.00 -0.06 8.14 -51.93 -0.42 -0.49 16 5 C -0.50 -13.03 6.47 -34.44 -0.22 -13.25 16 6 H 0.06 1.65 6.84 -52.49 -0.36 1.29 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -24.92 11.31 55.43 0.63 -24.29 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.52 -11.10 3.79 -229.58 -0.87 -11.97 16 14 C 0.06 1.17 5.39 -3.74 -0.02 1.15 16 15 C -0.07 -1.10 5.12 -27.94 -0.14 -1.24 16 16 C -0.14 -2.25 5.79 -104.41 -0.60 -2.86 16 17 C 0.21 2.99 6.73 -83.70 -0.56 2.42 16 18 N -0.88 -9.50 8.97 32.46 0.29 -9.21 16 19 C -0.21 -2.81 9.89 -39.45 -0.39 -3.20 16 20 C -0.08 -1.08 10.04 -39.69 -0.40 -1.48 16 21 C -0.18 -2.71 9.64 -39.44 -0.38 -3.09 16 22 C -0.02 -0.34 5.79 -104.64 -0.61 -0.94 16 23 C 0.09 1.66 4.56 -5.15 -0.02 1.63 16 24 H 0.06 1.44 7.12 -51.93 -0.37 1.07 16 25 H 0.04 0.88 7.37 -51.93 -0.38 0.50 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.01 0.29 6.53 -51.93 -0.34 -0.04 16 28 H 0.09 2.45 6.03 -51.93 -0.31 2.14 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 30 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 31 H 0.09 1.90 6.19 -51.93 -0.32 1.58 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 0.80 7.12 -51.93 -0.37 0.43 16 34 H 0.40 3.97 6.97 -40.82 -0.28 3.69 16 35 H 0.39 3.25 8.84 -40.82 -0.36 2.89 16 36 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.09 1.65 6.17 -51.93 -0.32 1.33 16 40 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -28.43 308.11 -9.61 -38.04 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.93 Total: 6.16 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -3.35 Total: -19.32 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.05 Total: -45.47 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.43 -9.61 -38.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038032915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.555 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds