Wall clock time and date at job start Mon Mar 30 2020 07:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47446 * 2 1 4 4 H 1.09003 * 109.47807 * 178.44460 * 3 2 1 5 5 C 1.50702 * 109.47280 * 298.44725 * 3 2 1 6 6 H 1.07996 * 120.00731 * 119.99803 * 5 3 2 7 7 C 1.37879 * 119.99418 * 299.99603 * 5 3 2 8 8 N 1.31516 * 120.00295 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99815 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47068 * 89.99958 * 9 7 5 11 11 H 1.48493 * 109.47058 * 210.00015 * 9 7 5 12 12 H 1.48496 * 109.47022 * 330.00123 * 9 7 5 13 13 N 1.46909 * 109.46859 * 58.44045 * 3 2 1 14 14 C 1.47161 * 110.99930 * 179.52903 * 13 3 2 15 15 C 1.52893 * 108.48878 * 165.36472 * 14 13 3 16 16 C 1.50704 * 109.95601 * 50.40516 * 15 14 13 17 17 C 1.39340 * 118.49405 * 163.24673 * 16 15 14 18 18 N 1.39671 * 119.90095 * 359.62201 * 17 16 15 19 19 C 1.38710 * 120.19285 * 179.59864 * 17 16 15 20 20 C 1.38130 * 119.74526 * 0.02562 * 19 17 16 21 21 C 1.38063 * 119.94781 * 0.08840 * 20 19 17 22 22 C 1.37703 * 121.69891 * 343.01393 * 16 15 14 23 23 C 1.46624 * 110.99477 * 56.51942 * 13 3 2 24 24 H 1.09005 * 109.46819 * 55.49508 * 1 2 3 25 25 H 1.08996 * 109.47405 * 295.50200 * 1 2 3 26 26 H 1.09002 * 109.47119 * 175.49429 * 1 2 3 27 27 H 1.09003 * 109.47444 * 119.99914 * 2 1 3 28 28 H 1.09004 * 109.47538 * 240.00295 * 2 1 3 29 29 H 0.96996 * 119.99757 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.63432 * 285.06555 * 14 13 3 31 31 H 1.08998 * 109.63186 * 45.66030 * 14 13 3 32 32 H 1.09000 * 109.38826 * 290.25990 * 15 14 13 33 33 H 1.08998 * 109.31535 * 170.50444 * 15 14 13 34 34 H 0.97005 * 120.00498 * 0.02562 * 18 17 16 35 35 H 0.97005 * 120.00159 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.13156 * 180.02562 * 19 17 16 37 37 H 1.07989 * 120.02866 * 180.11330 * 20 19 17 38 38 H 1.08003 * 119.72572 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.26827 * 296.17796 * 23 13 3 40 40 H 1.09000 * 109.27396 * 55.68465 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4427 0.0279 5 6 1.5694 2.1417 -1.2493 6 1 0.9463 3.0206 -1.1741 7 6 1.9345 1.6594 -2.4883 8 7 2.6937 0.5894 -2.5799 9 14 1.3506 2.5257 -4.0369 10 1 2.3385 3.5641 -4.4255 11 1 1.2140 1.5364 -5.1359 12 1 0.0352 3.1652 -3.7803 13 7 1.5198 2.1458 1.1802 14 6 1.9999 3.5363 1.2197 15 6 1.1574 4.3116 2.2329 16 6 1.1021 3.5601 3.5381 17 6 0.6949 4.2437 4.6820 18 7 0.3574 5.5966 4.6015 19 6 0.6232 3.5843 5.9002 20 6 0.9578 2.2462 5.9760 21 6 1.3632 1.5719 4.8415 22 6 1.4373 2.2270 3.6202 23 6 1.8894 1.4456 2.4143 24 1 -0.3633 0.5822 -0.8469 25 1 -0.3634 0.4424 0.9275 26 1 -0.3633 -1.0245 -0.0807 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.9501 0.2499 -3.4515 30 1 3.0465 3.5540 1.5237 31 1 1.8944 3.9882 0.2334 32 1 0.1468 4.4356 1.8437 33 1 1.6042 5.2919 2.3984 34 1 0.4064 6.0590 3.7501 35 1 0.0734 6.0738 5.3969 36 1 0.3071 4.1149 6.7861 37 1 0.9019 1.7279 6.9217 38 1 1.6243 0.5258 4.9050 39 1 1.4182 0.4628 2.4252 40 1 2.9723 1.3257 2.4494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038032915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:44 Heat of formation + Delta-G solvation = 6.615761 kcal Electronic energy + Delta-G solvation = -20002.378759 eV Core-core repulsion = 17201.448153 eV Total energy + Delta-G solvation = -2800.930607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.07340 -38.78802 -35.73449 -35.48925 -33.54660 -31.73099 -31.47339 -28.76499 -28.48226 -25.77345 -25.05268 -23.81297 -22.30272 -21.31601 -20.19839 -18.28531 -17.96564 -17.38504 -16.82403 -16.43993 -15.93109 -15.77469 -15.42282 -15.06689 -14.58527 -14.32199 -14.20183 -14.07739 -13.75117 -13.47195 -12.87871 -12.80644 -12.77848 -12.65270 -12.44342 -12.28846 -12.04498 -11.88398 -11.59533 -11.40914 -11.29567 -11.05781 -10.73781 -10.44647 -9.39690 -8.90954 -8.25355 -8.06338 -6.16069 0.59700 0.80006 1.42831 1.44783 1.54527 2.44621 3.00881 3.11286 3.21562 3.38347 3.89631 3.97891 4.27478 4.28206 4.44297 4.53363 4.58766 4.66278 4.69907 4.74402 4.78710 4.86076 4.89186 5.06814 5.09215 5.14737 5.25974 5.30480 5.44654 5.49580 5.55066 5.72158 5.75213 5.77504 5.83875 5.97635 6.09515 6.32715 6.44804 6.69519 6.75810 6.96130 7.09597 7.51277 8.99493 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.029596 B = 0.005769 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.860828 B = 4852.508825 C = 5480.209763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.108 4.108 3 C 0.221 3.779 4 H -0.045 1.045 5 C -0.501 4.501 6 H 0.058 0.942 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.523 5.523 14 C 0.059 3.941 15 C -0.055 4.055 16 C -0.162 4.162 17 C 0.211 3.789 18 N -0.868 5.868 19 C -0.210 4.210 20 C -0.075 4.075 21 C -0.191 4.191 22 C -0.044 4.044 23 C 0.092 3.908 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.026 0.974 28 H 0.064 0.936 29 H 0.260 0.740 30 H 0.010 0.990 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.402 0.598 35 H 0.407 0.593 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 7.021 15.237 17.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.114 3.886 4 H -0.027 1.027 5 C -0.540 4.540 6 H 0.076 0.924 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.780 3.220 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.193 1.193 13 N -0.247 5.247 14 C -0.069 4.069 15 C -0.092 4.092 16 C -0.167 4.167 17 C 0.106 3.894 18 N -0.409 5.409 19 C -0.233 4.233 20 C -0.093 4.093 21 C -0.212 4.212 22 C -0.045 4.045 23 C -0.036 4.036 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.231 0.769 35 H 0.238 0.762 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.140 0.860 39 H 0.101 0.899 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -4.723 6.895 15.054 17.219 hybrid contribution 0.976 0.326 -1.225 1.600 sum -3.747 7.220 13.829 16.044 Atomic orbital electron populations 1.21314 0.95681 0.98602 1.00862 1.21451 0.96445 0.97393 0.99367 1.19103 0.90038 0.91870 0.87544 1.02726 1.21219 1.30564 1.11713 0.90486 0.92407 1.25618 0.95385 0.95703 1.01708 1.70015 1.37532 1.23833 1.24630 0.85620 0.78813 0.78225 0.79374 1.20401 1.21170 1.19290 1.62376 1.58923 1.01942 1.01437 1.22004 0.94974 0.90305 0.99611 1.20253 1.00265 0.97363 0.91349 1.19187 1.08545 0.94255 0.94711 1.17780 0.93090 0.85614 0.92955 1.42456 1.76909 1.07260 1.14295 1.20774 1.10300 0.95837 0.96384 1.21031 0.96034 0.93992 0.98276 1.20955 1.07280 1.00637 0.92308 1.19540 0.97211 0.93314 0.94427 1.20947 0.96630 0.97619 0.88430 0.94308 0.93372 0.94450 0.95491 0.91743 0.93116 0.97147 0.90834 0.91122 0.89803 0.76861 0.76247 0.83953 0.83641 0.85960 0.89946 0.96120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 9.47 71.98 0.68 -4.09 16 2 C -0.11 -5.29 4.98 30.59 0.15 -5.14 16 3 C 0.22 11.36 1.74 44.17 0.08 11.44 16 4 H -0.04 -2.61 8.14 -2.39 -0.02 -2.63 16 5 C -0.50 -27.20 6.47 25.60 0.17 -27.04 16 6 H 0.06 3.13 6.84 -2.91 -0.02 3.11 16 7 C 0.01 0.78 5.30 84.65 0.45 1.23 16 8 N -0.92 -52.96 11.31 21.45 0.24 -52.72 16 9 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 N -0.52 -22.97 3.79 -880.26 -3.34 -26.31 16 14 C 0.06 2.39 5.39 86.22 0.46 2.86 16 15 C -0.05 -1.74 5.12 29.81 0.15 -1.59 16 16 C -0.16 -5.14 5.79 -19.72 -0.11 -5.26 16 17 C 0.21 5.37 6.73 38.27 0.26 5.63 16 18 N -0.87 -15.76 8.97 -51.23 -0.46 -16.22 16 19 C -0.21 -4.75 9.89 22.36 0.22 -4.53 16 20 C -0.07 -1.76 10.04 22.20 0.22 -1.54 16 21 C -0.19 -5.51 9.64 22.36 0.22 -5.29 16 22 C -0.04 -1.50 5.79 -19.88 -0.12 -1.62 16 23 C 0.09 3.61 4.56 85.59 0.39 4.00 16 24 H 0.04 1.86 7.12 -2.38 -0.02 1.84 16 25 H 0.05 2.04 7.37 -2.39 -0.02 2.02 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.03 1.21 6.53 -2.39 -0.02 1.19 16 28 H 0.06 3.54 6.03 -2.39 -0.01 3.52 16 29 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.01 0.43 8.05 -2.38 -0.02 0.41 16 31 H 0.07 3.17 6.19 -2.39 -0.01 3.16 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.08 2.17 7.12 -2.39 -0.02 2.16 16 34 H 0.40 6.80 6.97 -92.70 -0.65 6.15 16 35 H 0.41 5.11 8.84 -92.70 -0.82 4.29 16 36 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.15 2.48 8.06 -2.92 -0.02 2.45 16 38 H 0.12 3.20 8.06 -2.91 -0.02 3.17 16 39 H 0.08 3.21 6.17 -2.39 -0.01 3.20 16 40 H 0.02 0.86 8.13 -2.39 -0.02 0.84 16 Total: -1.00 -62.61 308.11 1.28 -61.33 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.41 Total: 19.24 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 3.22 Total: -30.93 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -3.56 Total: -95.25 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -62.61 1.28 -61.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038032915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.947 kcal (2) G-P(sol) polarization free energy of solvation -62.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds