Wall clock time and date at job start Mon Mar 30 2020 07:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47044 * 2 1 4 4 H 1.09003 * 109.47257 * 307.16060 * 3 2 1 5 5 C 1.50699 * 109.47214 * 187.15742 * 3 2 1 6 6 H 1.07999 * 120.00166 * 245.53220 * 5 3 2 7 7 C 1.37872 * 120.00198 * 65.53345 * 5 3 2 8 8 N 1.31517 * 120.00336 * 191.37057 * 7 5 3 9 9 Si 1.86810 * 119.99757 * 11.37258 * 7 5 3 10 10 H 1.48498 * 109.46919 * 94.90821 * 9 7 5 11 11 H 1.48502 * 109.46711 * 214.90950 * 9 7 5 12 12 H 1.48495 * 109.46984 * 334.90554 * 9 7 5 13 13 N 1.46903 * 109.46957 * 67.15948 * 3 2 1 14 14 C 1.47169 * 111.00055 * 154.50266 * 13 3 2 15 15 C 1.52896 * 108.49268 * 52.15024 * 14 13 3 16 16 C 1.50703 * 109.96945 * 50.31261 * 15 14 13 17 17 C 1.39340 * 118.49890 * 163.34898 * 16 15 14 18 18 N 1.39677 * 119.90188 * 359.76355 * 17 16 15 19 19 C 1.38711 * 120.19444 * 179.73791 * 17 16 15 20 20 C 1.38125 * 119.74672 * 0.03708 * 19 17 16 21 21 C 1.38058 * 119.94682 * 0.33008 * 20 19 17 22 22 C 1.37699 * 121.70259 * 343.24633 * 16 15 14 23 23 C 1.46625 * 110.99993 * 277.46444 * 13 3 2 24 24 H 1.09004 * 109.47560 * 163.37288 * 1 2 3 25 25 H 1.09000 * 109.47468 * 283.37220 * 1 2 3 26 26 H 1.08997 * 109.47650 * 43.36953 * 1 2 3 27 27 H 1.09001 * 109.46959 * 240.00338 * 2 1 3 28 28 H 1.08997 * 109.47379 * 120.00366 * 2 1 3 29 29 H 0.96998 * 120.00088 * 179.97438 * 8 7 5 30 30 H 1.08994 * 109.63356 * 171.85733 * 14 13 3 31 31 H 1.09003 * 109.62884 * 292.44574 * 14 13 3 32 32 H 1.09006 * 109.38441 * 170.46596 * 15 14 13 33 33 H 1.08995 * 109.38988 * 290.25722 * 15 14 13 34 34 H 0.97005 * 120.00143 * 359.97438 * 18 17 16 35 35 H 0.97002 * 120.00038 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.12690 * 180.02562 * 19 17 16 37 37 H 1.08002 * 120.02504 * 180.08681 * 20 19 17 38 38 H 1.07998 * 119.73236 * 179.75308 * 21 20 19 39 39 H 1.08997 * 109.27382 * 168.87812 * 23 13 3 40 40 H 1.09004 * 109.24205 * 49.38778 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5758 1.9920 -0.8190 5 6 3.5365 1.4462 -0.1770 6 1 4.1737 1.7993 0.6203 7 6 4.0922 0.9990 -1.3568 8 7 5.3883 0.7899 -1.4356 9 14 3.0043 0.6900 -2.8437 10 1 2.9999 1.8942 -3.7126 11 1 3.5286 -0.4702 -3.6081 12 1 1.6196 0.4004 -2.3921 13 7 1.6962 2.0833 1.2764 14 6 2.6277 3.1806 1.5833 15 6 2.6909 4.1154 0.3751 16 6 1.2972 4.4887 -0.0602 17 6 1.1353 5.5883 -0.9006 18 7 2.2517 6.3182 -1.3152 19 6 -0.1312 5.9598 -1.3272 20 6 -1.2329 5.2358 -0.9151 21 6 -1.0706 4.1513 -0.0763 22 6 0.1949 3.7723 0.3494 23 6 0.3164 2.5791 1.2608 24 1 -0.3634 -0.9847 -0.2941 25 1 -0.3634 0.2377 0.9998 26 1 -0.3634 0.7470 -0.7057 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.7792 0.4749 -2.2656 30 1 2.2712 3.7309 2.4540 31 1 3.6190 2.7741 1.7842 32 1 3.2399 5.0178 0.6442 33 1 3.2021 3.6121 -0.4455 34 1 3.1381 6.0596 -1.0177 35 1 2.1406 7.0841 -1.8999 36 1 -0.2554 6.8120 -1.9790 37 1 -2.2210 5.5202 -1.2457 38 1 -1.9348 3.5901 0.2469 39 1 0.0261 2.8671 2.2711 40 1 -0.3455 1.7881 0.9080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038032916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:47 Heat of formation + Delta-G solvation = 42.796958 kcal Electronic energy + Delta-G solvation = -20812.935222 eV Core-core repulsion = 18013.573549 eV Total energy + Delta-G solvation = -2799.361672 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08383 -37.39809 -34.43091 -33.47485 -32.17871 -30.36748 -30.04613 -27.63206 -27.31488 -23.96428 -23.14364 -22.09678 -21.02809 -20.53296 -18.27260 -17.05607 -16.61901 -16.25629 -15.34215 -15.01486 -14.42505 -14.08641 -13.67639 -13.58498 -13.31524 -12.91345 -12.71380 -12.37049 -12.23846 -12.11542 -11.68008 -11.51111 -11.30890 -10.91118 -10.86608 -10.71896 -10.47615 -10.16365 -10.05375 -9.86089 -9.68888 -9.25972 -8.81865 -8.50619 -8.02207 -7.29002 -7.09139 -6.10585 -4.05027 1.84733 2.02424 3.27511 3.37709 3.44045 4.18133 4.27433 4.41520 4.94139 5.19426 5.26427 5.32839 5.49046 5.69977 5.82166 5.88004 5.95046 5.99315 6.05875 6.11553 6.20374 6.23351 6.29101 6.33499 6.52035 6.66894 6.71300 6.74848 6.87950 6.92640 7.00218 7.05751 7.13900 7.21896 7.31728 7.45822 7.66116 7.84814 8.01575 8.06410 8.14640 8.65165 8.96356 9.53906 11.00544 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018241 B = 0.009499 C = 0.008353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.600518 B = 2947.023639 C = 3351.092177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C 0.186 3.814 4 H 0.008 0.992 5 C -0.516 4.516 6 H 0.087 0.913 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.854 3.146 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.247 1.247 13 N -0.515 5.515 14 C 0.073 3.927 15 C -0.116 4.116 16 C -0.130 4.130 17 C 0.211 3.789 18 N -0.879 5.879 19 C -0.211 4.211 20 C -0.086 4.086 21 C -0.179 4.179 22 C -0.063 4.063 23 C 0.065 3.935 24 H 0.036 0.964 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.263 0.737 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.113 0.887 34 H 0.400 0.600 35 H 0.392 0.608 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.866 7.919 1.808 12.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C 0.078 3.922 4 H 0.025 0.975 5 C -0.553 4.553 6 H 0.105 0.895 7 C -0.125 4.125 8 N -0.531 5.531 9 Si 0.681 3.319 10 H -0.211 1.211 11 H -0.214 1.214 12 H -0.171 1.171 13 N -0.237 5.237 14 C -0.055 4.055 15 C -0.154 4.154 16 C -0.134 4.134 17 C 0.107 3.893 18 N -0.419 5.419 19 C -0.234 4.234 20 C -0.105 4.105 21 C -0.199 4.199 22 C -0.065 4.065 23 C -0.063 4.063 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.229 0.771 35 H 0.219 0.781 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.680 7.434 2.094 12.383 hybrid contribution -0.306 0.778 -1.937 2.110 sum -9.986 8.212 0.157 12.929 Atomic orbital electron populations 1.22104 0.98900 0.99724 1.00557 1.21897 0.92536 0.99540 1.01207 1.19704 0.96318 0.90304 0.85866 0.97466 1.21205 0.89399 1.42984 1.01731 0.89530 1.24867 0.94633 0.94524 0.98514 1.69936 1.10921 1.45496 1.26769 0.87342 0.83005 0.77896 0.83630 1.21060 1.21449 1.17131 1.62564 0.99933 1.26354 1.34805 1.21956 0.98519 0.90466 0.94606 1.21169 0.92482 0.99259 1.02528 1.19254 0.96324 0.96220 1.01645 1.17738 0.87355 0.91117 0.93094 1.42518 1.07139 1.34837 1.57388 1.20370 0.91462 1.03958 1.07611 1.20638 0.97419 0.95272 0.97152 1.20771 0.96479 0.99821 1.02860 1.20315 0.92256 0.96799 0.97126 1.21732 0.93921 0.93517 0.97165 0.94477 0.92419 0.93689 0.92771 0.92004 0.92756 0.93343 0.89214 0.92944 0.86928 0.77062 0.78121 0.87130 0.86988 0.87045 0.90845 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 8.28 37.15 0.31 -2.51 16 2 C -0.11 -2.46 4.77 -26.73 -0.13 -2.59 16 3 C 0.19 4.23 0.57 -68.86 -0.04 4.19 16 4 H 0.01 0.19 5.13 -51.93 -0.27 -0.08 16 5 C -0.52 -13.48 6.30 -34.44 -0.22 -13.69 16 6 H 0.09 2.42 5.66 -52.49 -0.30 2.12 16 7 C 0.08 2.12 5.37 -17.82 -0.10 2.03 16 8 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 9 Si 0.85 21.11 25.71 -169.99 -4.37 16.74 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.25 -5.85 5.33 56.52 0.30 -5.54 16 13 N -0.52 -10.43 4.86 -229.58 -1.12 -11.55 16 14 C 0.07 1.41 5.43 -3.73 -0.02 1.39 16 15 C -0.12 -2.22 4.30 -27.94 -0.12 -2.34 16 16 C -0.13 -2.41 5.19 -104.41 -0.54 -2.96 16 17 C 0.21 3.55 6.73 -83.70 -0.56 2.99 16 18 N -0.88 -12.29 8.97 32.46 0.29 -12.00 16 19 C -0.21 -3.24 9.89 -39.45 -0.39 -3.63 16 20 C -0.09 -1.29 10.04 -39.69 -0.40 -1.68 16 21 C -0.18 -2.86 9.64 -39.44 -0.38 -3.24 16 22 C -0.06 -1.12 5.01 -104.64 -0.52 -1.65 16 23 C 0.07 1.15 5.21 -5.16 -0.03 1.12 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.95 6.33 -51.93 -0.33 0.62 16 26 H 0.04 0.83 7.51 -51.93 -0.39 0.44 16 27 H 0.05 1.25 4.78 -51.93 -0.25 1.00 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.05 0.85 8.05 -51.93 -0.42 0.43 16 31 H 0.09 1.88 6.02 -51.93 -0.31 1.57 16 32 H 0.05 0.89 7.13 -51.93 -0.37 0.52 16 33 H 0.11 2.55 5.70 -51.93 -0.30 2.25 16 34 H 0.40 5.55 6.97 -40.82 -0.28 5.26 16 35 H 0.39 4.37 8.84 -40.82 -0.36 4.01 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.10 1.70 3.63 -51.93 -0.19 1.51 16 LS Contribution 292.44 15.07 4.41 4.41 Total: -1.00 -29.23 292.44 -8.69 -37.92 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.53 Total: 12.51 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -3.14 Total: -22.58 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.05 Total: -49.00 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.37 Total: 16.74 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.23 -8.69 -37.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038032916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.717 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds