Wall clock time and date at job start Mon Mar 30 2020 07:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47044 * 2 1 4 4 H 1.09003 * 109.47257 * 307.16060 * 3 2 1 5 5 C 1.50699 * 109.47214 * 187.15742 * 3 2 1 6 6 H 1.07999 * 120.00166 * 245.53220 * 5 3 2 7 7 C 1.37872 * 120.00198 * 65.53345 * 5 3 2 8 8 N 1.31517 * 120.00336 * 191.37057 * 7 5 3 9 9 Si 1.86810 * 119.99757 * 11.37258 * 7 5 3 10 10 H 1.48498 * 109.46919 * 94.90821 * 9 7 5 11 11 H 1.48502 * 109.46711 * 214.90950 * 9 7 5 12 12 H 1.48495 * 109.46984 * 334.90554 * 9 7 5 13 13 N 1.46903 * 109.46957 * 67.15948 * 3 2 1 14 14 C 1.47169 * 111.00055 * 154.50266 * 13 3 2 15 15 C 1.52896 * 108.49268 * 52.15024 * 14 13 3 16 16 C 1.50703 * 109.96945 * 50.31261 * 15 14 13 17 17 C 1.39340 * 118.49890 * 163.34898 * 16 15 14 18 18 N 1.39677 * 119.90188 * 359.76355 * 17 16 15 19 19 C 1.38711 * 120.19444 * 179.73791 * 17 16 15 20 20 C 1.38125 * 119.74672 * 0.03708 * 19 17 16 21 21 C 1.38058 * 119.94682 * 0.33008 * 20 19 17 22 22 C 1.37699 * 121.70259 * 343.24633 * 16 15 14 23 23 C 1.46625 * 110.99993 * 277.46444 * 13 3 2 24 24 H 1.09004 * 109.47560 * 163.37288 * 1 2 3 25 25 H 1.09000 * 109.47468 * 283.37220 * 1 2 3 26 26 H 1.08997 * 109.47650 * 43.36953 * 1 2 3 27 27 H 1.09001 * 109.46959 * 240.00338 * 2 1 3 28 28 H 1.08997 * 109.47379 * 120.00366 * 2 1 3 29 29 H 0.96998 * 120.00088 * 179.97438 * 8 7 5 30 30 H 1.08994 * 109.63356 * 171.85733 * 14 13 3 31 31 H 1.09003 * 109.62884 * 292.44574 * 14 13 3 32 32 H 1.09006 * 109.38441 * 170.46596 * 15 14 13 33 33 H 1.08995 * 109.38988 * 290.25722 * 15 14 13 34 34 H 0.97005 * 120.00143 * 359.97438 * 18 17 16 35 35 H 0.97002 * 120.00038 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.12690 * 180.02562 * 19 17 16 37 37 H 1.08002 * 120.02504 * 180.08681 * 20 19 17 38 38 H 1.07998 * 119.73236 * 179.75308 * 21 20 19 39 39 H 1.08997 * 109.27382 * 168.87812 * 23 13 3 40 40 H 1.09004 * 109.24205 * 49.38778 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5758 1.9920 -0.8190 5 6 3.5365 1.4462 -0.1770 6 1 4.1737 1.7993 0.6203 7 6 4.0922 0.9990 -1.3568 8 7 5.3883 0.7899 -1.4356 9 14 3.0043 0.6900 -2.8437 10 1 2.9999 1.8942 -3.7126 11 1 3.5286 -0.4702 -3.6081 12 1 1.6196 0.4004 -2.3921 13 7 1.6962 2.0833 1.2764 14 6 2.6277 3.1806 1.5833 15 6 2.6909 4.1154 0.3751 16 6 1.2972 4.4887 -0.0602 17 6 1.1353 5.5883 -0.9006 18 7 2.2517 6.3182 -1.3152 19 6 -0.1312 5.9598 -1.3272 20 6 -1.2329 5.2358 -0.9151 21 6 -1.0706 4.1513 -0.0763 22 6 0.1949 3.7723 0.3494 23 6 0.3164 2.5791 1.2608 24 1 -0.3634 -0.9847 -0.2941 25 1 -0.3634 0.2377 0.9998 26 1 -0.3634 0.7470 -0.7057 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.7792 0.4749 -2.2656 30 1 2.2712 3.7309 2.4540 31 1 3.6190 2.7741 1.7842 32 1 3.2399 5.0178 0.6442 33 1 3.2021 3.6121 -0.4455 34 1 3.1381 6.0596 -1.0177 35 1 2.1406 7.0841 -1.8999 36 1 -0.2554 6.8120 -1.9790 37 1 -2.2210 5.5202 -1.2457 38 1 -1.9348 3.5901 0.2469 39 1 0.0261 2.8671 2.2711 40 1 -0.3455 1.7881 0.9080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038032916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:46 Heat of formation + Delta-G solvation = 22.800783 kcal Electronic energy + Delta-G solvation = -20813.802321 eV Core-core repulsion = 18013.573549 eV Total energy + Delta-G solvation = -2800.228771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47011 -38.84398 -35.66802 -35.14911 -34.07745 -31.76635 -31.50156 -29.21946 -28.71830 -25.63661 -24.59589 -23.66016 -22.28527 -22.13668 -19.85840 -18.87106 -17.98653 -17.49282 -17.04309 -16.32520 -16.11278 -15.62017 -15.18970 -15.05516 -14.83028 -14.42427 -14.18204 -13.92668 -13.78453 -13.65483 -13.29567 -12.95871 -12.80701 -12.66624 -12.44831 -12.15647 -12.04478 -11.74083 -11.69142 -11.36136 -11.32515 -10.97759 -10.68349 -10.57409 -9.32200 -8.90503 -8.29298 -8.24682 -6.19981 0.60074 0.80506 1.27699 1.34790 1.43722 2.35061 2.99948 3.09135 3.09519 3.40493 4.01911 4.04797 4.27073 4.35483 4.41664 4.47566 4.48884 4.54910 4.67865 4.69997 4.76120 4.85529 4.91434 4.99945 5.08693 5.16456 5.21529 5.28342 5.34626 5.37574 5.48737 5.58575 5.62402 5.73531 5.84058 5.90350 6.10324 6.15814 6.41389 6.65100 6.80864 6.84910 7.01426 7.41300 8.89534 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018241 B = 0.009499 C = 0.008353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.600518 B = 2947.023639 C = 3351.092177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.197 3.803 4 H -0.005 1.005 5 C -0.500 4.500 6 H 0.057 0.943 7 C 0.026 3.974 8 N -0.941 5.941 9 Si 0.906 3.094 10 H -0.291 1.291 11 H -0.290 1.290 12 H -0.227 1.227 13 N -0.522 5.522 14 C 0.074 3.926 15 C -0.103 4.103 16 C -0.163 4.163 17 C 0.198 3.802 18 N -0.874 5.874 19 C -0.216 4.216 20 C -0.081 4.081 21 C -0.186 4.186 22 C -0.078 4.078 23 C 0.065 3.935 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.261 0.739 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.398 0.602 35 H 0.405 0.595 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.092 0.908 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.295 8.752 1.636 16.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.089 3.911 4 H 0.013 0.987 5 C -0.538 4.538 6 H 0.075 0.925 7 C -0.171 4.171 8 N -0.582 5.582 9 Si 0.732 3.268 10 H -0.218 1.218 11 H -0.216 1.216 12 H -0.150 1.150 13 N -0.243 5.243 14 C -0.054 4.054 15 C -0.142 4.142 16 C -0.167 4.167 17 C 0.093 3.907 18 N -0.414 5.414 19 C -0.239 4.239 20 C -0.100 4.100 21 C -0.206 4.206 22 C -0.080 4.080 23 C -0.063 4.063 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.227 0.773 35 H 0.235 0.765 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.110 0.890 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.134 8.285 1.927 15.648 hybrid contribution 0.764 0.625 -1.800 2.053 sum -12.370 8.910 0.126 15.245 Atomic orbital electron populations 1.22001 0.95500 1.01037 1.01837 1.21837 0.95636 0.98012 1.00082 1.19468 0.93542 0.91324 0.86807 0.98742 1.21437 0.91392 1.40554 1.00424 0.92475 1.25490 0.95479 0.95136 1.01037 1.70055 1.12675 1.48067 1.27377 0.86512 0.82610 0.77156 0.80539 1.21841 1.21606 1.14982 1.62521 1.01715 1.27053 1.33032 1.21890 0.97275 0.90559 0.95696 1.20880 0.93504 0.99153 1.00642 1.19280 0.95716 0.97981 1.03769 1.17967 0.88691 0.91013 0.93006 1.42509 1.06575 1.34996 1.57312 1.20742 0.90892 1.04674 1.07543 1.21074 0.98813 0.94255 0.95824 1.21051 0.96282 1.00426 1.02848 1.20428 0.93081 0.96859 0.97662 1.21822 0.91968 0.93979 0.98495 0.92401 0.90510 0.93794 0.94395 0.92737 0.92959 0.91145 0.91957 0.91754 0.91203 0.77310 0.76516 0.84666 0.83674 0.84709 0.88957 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 8.28 71.98 0.60 -4.23 16 2 C -0.12 -4.95 4.77 30.59 0.15 -4.81 16 3 C 0.20 8.94 0.57 44.17 0.03 8.96 16 4 H 0.00 -0.24 5.13 -2.39 -0.01 -0.25 16 5 C -0.50 -27.08 6.30 25.60 0.16 -26.91 16 6 H 0.06 3.39 5.66 -2.91 -0.02 3.37 16 7 C 0.03 1.49 5.37 84.65 0.45 1.94 16 8 N -0.94 -57.58 13.96 21.45 0.30 -57.29 16 9 Si 0.91 44.32 25.71 68.60 1.76 46.08 16 10 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 11 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 12 H -0.23 -10.25 5.33 99.48 0.53 -9.72 16 13 N -0.52 -20.79 4.86 -880.26 -4.28 -25.07 16 14 C 0.07 2.91 5.43 86.22 0.47 3.38 16 15 C -0.10 -4.03 4.30 29.81 0.13 -3.90 16 16 C -0.16 -5.87 5.19 -19.73 -0.10 -5.98 16 17 C 0.20 6.33 6.73 38.27 0.26 6.59 16 18 N -0.87 -23.49 8.97 -51.23 -0.46 -23.95 16 19 C -0.22 -5.91 9.89 22.36 0.22 -5.69 16 20 C -0.08 -2.08 10.04 22.20 0.22 -1.86 16 21 C -0.19 -5.25 9.64 22.36 0.22 -5.03 16 22 C -0.08 -2.63 5.01 -19.88 -0.10 -2.73 16 23 C 0.07 2.14 5.21 85.59 0.45 2.58 16 24 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.08 2.23 6.33 -2.39 -0.02 2.22 16 26 H 0.04 1.46 7.51 -2.39 -0.02 1.44 16 27 H 0.04 1.70 4.78 -2.39 -0.01 1.69 16 28 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.07 2.43 8.05 -2.39 -0.02 2.41 16 31 H 0.06 2.76 6.02 -2.39 -0.01 2.74 16 32 H 0.06 2.24 7.13 -2.38 -0.02 2.22 16 33 H 0.07 3.31 5.70 -2.39 -0.01 3.29 16 34 H 0.40 11.03 6.97 -92.70 -0.65 10.38 16 35 H 0.41 8.36 8.84 -92.71 -0.82 7.55 16 36 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.11 3.36 3.63 -2.39 -0.01 3.35 16 Total: -1.00 -64.51 292.44 -0.10 -64.61 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -0.57 Total: 33.30 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 3.14 Total: -37.69 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -4.44 Total: -106.30 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.76 Total: 46.08 kcal Total: -64.51 -0.10 -64.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038032916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.408 kcal (2) G-P(sol) polarization free energy of solvation -64.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds