Wall clock time and date at job start Mon Mar 30 2020 06:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00363 * 2 1 4 4 H 1.48501 * 109.47497 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47241 * 299.99652 * 3 2 1 6 6 H 1.48497 * 109.47310 * 59.99908 * 3 2 1 7 7 C 1.37882 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00097 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47178 * 179.97438 * 9 7 2 11 11 C 1.39671 * 119.99985 * 269.99548 * 10 9 7 12 12 C 1.38906 * 120.07386 * 185.39629 * 11 10 9 13 13 C 1.38105 * 119.92263 * 179.76985 * 12 11 10 14 14 C 1.38288 * 120.07705 * 0.51338 * 13 12 11 15 15 C 1.38288 * 120.14430 * 359.74065 * 14 13 12 16 16 C 1.38097 * 120.07907 * 0.02562 * 15 14 13 17 17 C 1.46502 * 119.99729 * 89.99488 * 10 9 7 18 18 H 1.09005 * 110.53730 * 126.57741 * 17 10 9 19 19 C 1.54890 * 110.48870 * 3.96608 * 17 10 9 20 20 C 1.54889 * 102.90997 * 203.46878 * 19 17 10 21 21 C 1.54267 * 104.19958 * 37.84900 * 20 19 17 22 22 C 1.53874 * 106.59778 * 336.39018 * 21 20 19 23 23 H 1.08998 * 110.02944 * 240.66990 * 22 21 20 24 24 N 1.46898 * 110.03189 * 119.28413 * 22 21 20 25 25 H 0.97003 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47502 * 59.99142 * 9 7 2 27 27 H 1.09000 * 109.46612 * 299.99398 * 9 7 2 28 28 H 1.07997 * 120.04079 * 0.02562 * 12 11 10 29 29 H 1.07999 * 119.96531 * 180.25318 * 13 12 11 30 30 H 1.07996 * 119.92926 * 179.73075 * 14 13 12 31 31 H 1.08001 * 119.95928 * 179.97438 * 15 14 13 32 32 H 1.08003 * 120.04103 * 179.97438 * 16 15 14 33 33 H 1.08999 * 110.75554 * 85.06546 * 19 17 10 34 34 H 1.09000 * 110.75167 * 321.87288 * 19 17 10 35 35 H 1.09006 * 110.48240 * 156.52485 * 20 19 17 36 36 H 1.09003 * 110.48890 * 279.03662 * 20 19 17 37 37 H 1.09004 * 110.02935 * 95.67319 * 21 20 19 38 38 H 1.08994 * 110.03648 * 217.05016 * 21 20 19 39 39 H 1.00894 * 111.00479 * 61.45472 * 24 22 21 40 40 H 1.00901 * 110.99210 * 185.40736 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.6566 -4.1437 -1.2091 12 6 3.4702 -5.2695 -1.2135 13 6 3.9132 -5.7946 -2.4116 14 6 3.5563 -5.1947 -3.6054 15 6 2.7507 -4.0707 -3.6042 16 6 2.3003 -3.5432 -2.4100 17 6 2.6789 -4.1694 1.2693 18 1 2.5223 -5.2478 1.2964 19 6 1.9643 -3.4878 2.4625 20 6 2.9562 -3.7078 3.6315 21 6 4.3467 -3.5409 2.9845 22 6 4.1718 -3.8365 1.4845 23 1 4.7914 -4.6857 1.1967 24 7 4.5387 -2.6548 0.6927 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 3.7528 -5.7360 -0.2814 29 1 4.5425 -6.6723 -2.4160 30 1 3.9076 -5.6048 -4.5406 31 1 2.4741 -3.6044 -4.5382 32 1 1.6715 -2.6651 -2.4098 33 1 1.0100 -3.9723 2.6692 34 1 1.8224 -2.4241 2.2712 35 1 2.8040 -2.9574 4.4074 36 1 2.8432 -4.7103 4.0443 37 1 4.7038 -2.5207 3.1249 38 1 5.0508 -4.2466 3.4253 39 1 5.5063 -2.4083 0.8381 40 1 4.3463 -2.8020 -0.2867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040988939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:06 Heat of formation + Delta-G solvation = 39.078485 kcal Electronic energy + Delta-G solvation = -20518.121399 eV Core-core repulsion = 17718.598482 eV Total energy + Delta-G solvation = -2799.522917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.48218 -37.64080 -34.56737 -32.47412 -32.00644 -30.31801 -29.22923 -27.71631 -26.46039 -25.15868 -22.94944 -21.57945 -20.66447 -19.91885 -18.54495 -16.89601 -16.48861 -15.50410 -15.41885 -14.92864 -14.71156 -14.13135 -13.80654 -13.66495 -13.44783 -12.78799 -12.68539 -12.50796 -11.98896 -11.56917 -11.31048 -11.24819 -10.87800 -10.82092 -10.78558 -10.73719 -10.53078 -10.42656 -10.17844 -9.92821 -9.81252 -9.45378 -8.74602 -8.34353 -8.27887 -7.79568 -6.41921 -5.86603 -3.93068 2.07993 2.29865 3.36037 3.44462 3.51321 4.08223 4.53495 4.58367 4.93295 5.02646 5.18701 5.39532 5.45044 5.50388 5.55243 5.73242 5.80380 5.81148 5.90725 5.99894 6.08868 6.14262 6.25751 6.31522 6.32760 6.39609 6.49726 6.64069 6.65667 6.98545 7.09152 7.10724 7.22493 7.30646 7.47620 7.62628 7.83445 8.08408 8.14275 8.33843 8.41128 8.56417 9.28182 9.72076 11.15256 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.009832 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.853086 B = 2847.142062 C = 4037.009222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.053 3.947 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.512 4.512 8 H 0.094 0.906 9 C 0.246 3.754 10 N -0.593 5.593 11 C 0.236 3.764 12 C -0.227 4.227 13 C -0.079 4.079 14 C -0.206 4.206 15 C -0.077 4.077 16 C -0.185 4.185 17 C 0.161 3.839 18 H 0.059 0.941 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.114 4.114 22 C 0.077 3.923 23 H 0.023 0.977 24 N -0.815 5.815 25 H 0.258 0.742 26 H 0.028 0.972 27 H 0.035 0.965 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.322 0.678 40 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 -9.347 1.389 11.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.147 4.147 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.551 4.551 8 H 0.112 0.888 9 C 0.127 3.873 10 N -0.297 5.297 11 C 0.129 3.871 12 C -0.250 4.250 13 C -0.098 4.098 14 C -0.227 4.227 15 C -0.096 4.096 16 C -0.208 4.208 17 C 0.055 3.945 18 H 0.077 0.923 19 C -0.163 4.163 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.036 4.036 23 H 0.040 0.960 24 N -0.348 5.348 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.133 0.867 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.324 -8.743 2.030 10.980 hybrid contribution 1.118 0.336 -0.461 1.255 sum 7.442 -8.407 1.569 11.336 Atomic orbital electron populations 1.69970 1.05998 1.26407 1.52299 1.24985 0.94659 0.99064 0.96006 0.86527 0.80418 0.83919 0.77025 1.19631 1.21639 1.21589 1.22140 0.95645 0.89510 1.47805 0.88774 1.19356 0.87140 0.83080 0.97727 1.47129 1.46499 1.35612 1.00424 1.17921 0.91415 0.90828 0.86969 1.20576 1.06927 0.99652 0.97851 1.20658 0.98399 0.98347 0.92368 1.20645 1.05215 0.99754 0.97074 1.20841 0.96299 0.95281 0.97173 1.20970 1.06132 1.02941 0.90751 1.21675 0.92380 0.95513 0.84888 0.92322 1.22815 0.96591 1.04536 0.92380 1.22234 0.95039 1.00509 0.97866 1.22170 0.97034 1.01843 0.94229 1.22293 0.96304 0.91368 0.93621 0.95957 1.58841 1.24695 1.37122 1.14107 0.93287 0.95447 0.94760 0.87356 0.87658 0.87777 0.87165 0.84785 0.92380 0.87122 0.91727 0.92570 0.90748 0.92904 0.86684 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.88 13.29 55.43 0.74 -25.15 16 2 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.51 -13.19 8.46 -34.44 -0.29 -13.48 16 8 H 0.09 2.42 5.14 -52.49 -0.27 2.15 16 9 C 0.25 5.90 4.10 -5.19 -0.02 5.88 16 10 N -0.59 -11.90 1.88 -163.54 -0.31 -12.21 16 11 C 0.24 4.55 4.72 -83.79 -0.40 4.16 16 12 C -0.23 -3.86 8.78 -39.38 -0.35 -4.21 16 13 C -0.08 -1.23 10.04 -39.61 -0.40 -1.63 16 14 C -0.21 -3.24 10.04 -39.54 -0.40 -3.63 16 15 C -0.08 -1.32 10.04 -39.61 -0.40 -1.71 16 16 C -0.19 -3.66 9.16 -39.38 -0.36 -4.02 16 17 C 0.16 2.82 2.73 -66.16 -0.18 2.64 16 18 H 0.06 0.97 7.41 -51.93 -0.38 0.59 16 19 C -0.13 -2.21 5.11 -24.74 -0.13 -2.33 16 20 C -0.12 -1.69 6.83 -25.07 -0.17 -1.87 16 21 C -0.11 -1.64 6.58 -25.61 -0.17 -1.81 16 22 C 0.08 1.24 3.21 -66.49 -0.21 1.02 16 23 H 0.02 0.34 7.27 -51.93 -0.38 -0.03 16 24 N -0.81 -14.47 6.64 -3.63 -0.02 -14.49 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.03 0.72 6.45 -51.93 -0.34 0.39 16 27 H 0.03 0.87 6.05 -51.93 -0.31 0.56 16 28 H 0.11 1.74 5.60 -52.49 -0.29 1.44 16 29 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.10 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.13 2.95 6.26 -52.48 -0.33 2.63 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.11 2.38 5.85 -51.93 -0.30 2.08 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.14 7.92 -51.93 -0.41 0.72 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.32 5.02 9.06 -39.29 -0.36 4.66 16 40 H 0.35 6.76 5.99 -39.29 -0.24 6.53 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -27.35 305.98 -9.27 -36.63 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -5.70 Total: 13.70 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -3.56 Total: -19.66 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.41 Total: -51.85 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.35 -9.27 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040988939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.706 kcal (2) G-P(sol) polarization free energy of solvation -27.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds