Wall clock time and date at job start Mon Mar 30 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00363 * 2 1 4 4 H 1.48501 * 109.47497 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47241 * 299.99652 * 3 2 1 6 6 H 1.48497 * 109.47310 * 59.99908 * 3 2 1 7 7 C 1.37882 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00097 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47178 * 179.97438 * 9 7 2 11 11 C 1.39671 * 119.99985 * 269.99548 * 10 9 7 12 12 C 1.38906 * 120.07386 * 185.39629 * 11 10 9 13 13 C 1.38105 * 119.92263 * 179.76985 * 12 11 10 14 14 C 1.38288 * 120.07705 * 0.51338 * 13 12 11 15 15 C 1.38288 * 120.14430 * 359.74065 * 14 13 12 16 16 C 1.38097 * 120.07907 * 0.02562 * 15 14 13 17 17 C 1.46502 * 119.99729 * 89.99488 * 10 9 7 18 18 H 1.09005 * 110.53730 * 126.57741 * 17 10 9 19 19 C 1.54890 * 110.48870 * 3.96608 * 17 10 9 20 20 C 1.54889 * 102.90997 * 203.46878 * 19 17 10 21 21 C 1.54267 * 104.19958 * 37.84900 * 20 19 17 22 22 C 1.53874 * 106.59778 * 336.39018 * 21 20 19 23 23 H 1.08998 * 110.02944 * 240.66990 * 22 21 20 24 24 N 1.46898 * 110.03189 * 119.28413 * 22 21 20 25 25 H 0.97003 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47502 * 59.99142 * 9 7 2 27 27 H 1.09000 * 109.46612 * 299.99398 * 9 7 2 28 28 H 1.07997 * 120.04079 * 0.02562 * 12 11 10 29 29 H 1.07999 * 119.96531 * 180.25318 * 13 12 11 30 30 H 1.07996 * 119.92926 * 179.73075 * 14 13 12 31 31 H 1.08001 * 119.95928 * 179.97438 * 15 14 13 32 32 H 1.08003 * 120.04103 * 179.97438 * 16 15 14 33 33 H 1.08999 * 110.75554 * 85.06546 * 19 17 10 34 34 H 1.09000 * 110.75167 * 321.87288 * 19 17 10 35 35 H 1.09006 * 110.48240 * 156.52485 * 20 19 17 36 36 H 1.09003 * 110.48890 * 279.03662 * 20 19 17 37 37 H 1.09004 * 110.02935 * 95.67319 * 21 20 19 38 38 H 1.08994 * 110.03648 * 217.05016 * 21 20 19 39 39 H 1.00894 * 111.00479 * 61.45472 * 24 22 21 40 40 H 1.00901 * 110.99210 * 185.40736 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.6566 -4.1437 -1.2091 12 6 3.4702 -5.2695 -1.2135 13 6 3.9132 -5.7946 -2.4116 14 6 3.5563 -5.1947 -3.6054 15 6 2.7507 -4.0707 -3.6042 16 6 2.3003 -3.5432 -2.4100 17 6 2.6789 -4.1694 1.2693 18 1 2.5223 -5.2478 1.2964 19 6 1.9643 -3.4878 2.4625 20 6 2.9562 -3.7078 3.6315 21 6 4.3467 -3.5409 2.9845 22 6 4.1718 -3.8365 1.4845 23 1 4.7914 -4.6857 1.1967 24 7 4.5387 -2.6548 0.6927 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 3.7528 -5.7360 -0.2814 29 1 4.5425 -6.6723 -2.4160 30 1 3.9076 -5.6048 -4.5406 31 1 2.4741 -3.6044 -4.5382 32 1 1.6715 -2.6651 -2.4098 33 1 1.0100 -3.9723 2.6692 34 1 1.8224 -2.4241 2.2712 35 1 2.8040 -2.9574 4.4074 36 1 2.8432 -4.7103 4.0443 37 1 4.7038 -2.5207 3.1249 38 1 5.0508 -4.2466 3.4253 39 1 5.5063 -2.4083 0.8381 40 1 4.3463 -2.8020 -0.2867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040988939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:05 Heat of formation + Delta-G solvation = 24.165306 kcal Electronic energy + Delta-G solvation = -20518.768083 eV Core-core repulsion = 17718.598482 eV Total energy + Delta-G solvation = -2800.169601 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.88737 -38.95370 -36.11196 -34.39083 -33.37689 -31.70946 -30.67897 -29.36520 -27.81088 -26.70137 -24.72359 -22.97185 -22.06612 -21.20914 -19.94936 -18.48761 -18.23077 -16.98132 -16.82721 -16.52933 -16.10911 -15.85666 -15.11642 -14.97733 -14.81192 -14.51886 -14.10367 -13.97295 -13.63724 -13.08540 -12.98573 -12.74253 -12.57898 -12.44698 -12.18728 -12.09619 -11.94758 -11.87375 -11.70750 -11.42118 -11.38812 -11.13046 -10.45616 -10.34620 -9.64796 -9.15170 -8.19470 -7.70481 -6.07253 0.72183 0.94776 1.40398 1.43489 1.55906 2.45965 2.64269 3.19673 3.28649 3.66168 3.74817 3.92503 4.16295 4.28527 4.29629 4.45919 4.50186 4.59785 4.61948 4.70638 4.80270 4.88281 4.95134 4.99571 5.10845 5.14747 5.20814 5.24390 5.36852 5.40912 5.43044 5.63773 5.71936 5.79714 5.92712 5.98244 6.26586 6.36711 6.52972 6.69597 6.79670 7.05942 7.21475 7.61064 9.05267 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.009832 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.853086 B = 2847.142062 C = 4037.009222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.001 4.001 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.499 4.499 8 H 0.096 0.904 9 C 0.268 3.732 10 N -0.600 5.600 11 C 0.217 3.783 12 C -0.222 4.222 13 C -0.073 4.073 14 C -0.198 4.198 15 C -0.080 4.080 16 C -0.217 4.217 17 C 0.156 3.844 18 H 0.075 0.925 19 C -0.128 4.128 20 C -0.110 4.110 21 C -0.110 4.110 22 C 0.081 3.919 23 H 0.041 0.959 24 N -0.833 5.833 25 H 0.255 0.745 26 H -0.005 1.005 27 H 0.013 0.987 28 H 0.123 0.877 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.333 0.667 40 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.816 -11.524 1.493 15.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.539 4.539 8 H 0.114 0.886 9 C 0.147 3.853 10 N -0.306 5.306 11 C 0.112 3.888 12 C -0.245 4.245 13 C -0.091 4.091 14 C -0.219 4.219 15 C -0.099 4.099 16 C -0.240 4.240 17 C 0.051 3.949 18 H 0.093 0.907 19 C -0.165 4.165 20 C -0.147 4.147 21 C -0.148 4.148 22 C -0.032 4.032 23 H 0.059 0.941 24 N -0.366 5.366 25 H 0.064 0.936 26 H 0.013 0.987 27 H 0.031 0.969 28 H 0.141 0.859 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.146 0.854 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.047 -10.943 2.133 14.358 hybrid contribution 0.302 0.905 -0.576 1.114 sum 9.349 -10.038 1.558 13.806 Atomic orbital electron populations 1.70092 1.07350 1.26808 1.54289 1.25710 0.95329 1.02165 0.96489 0.85603 0.79397 0.80457 0.76679 1.19066 1.21731 1.21578 1.22404 0.95744 0.90240 1.45476 0.88608 1.18772 0.87319 0.84233 0.94968 1.46863 1.46653 1.35130 1.01922 1.18102 0.92530 0.91959 0.86202 1.20752 1.05891 0.98495 0.99343 1.21104 0.97663 0.98906 0.91459 1.21036 1.03602 0.98481 0.98743 1.21062 0.96231 0.95927 0.96698 1.20840 1.07560 1.02912 0.92646 1.21912 0.93521 0.96050 0.83415 0.90738 1.22706 0.97869 1.01501 0.94454 1.22219 0.93858 1.02208 0.96464 1.22165 0.97511 1.02019 0.93090 1.22329 0.95093 0.91340 0.94410 0.94099 1.58786 1.25728 1.38497 1.13572 0.93567 0.98737 0.96876 0.85896 0.83943 0.84527 0.85698 0.88675 0.92527 0.91759 0.91566 0.89742 0.92020 0.89741 0.85413 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.49 13.29 21.45 0.28 -56.20 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.95 45.67 29.54 68.60 2.03 47.70 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.50 -26.87 8.46 25.60 0.22 -26.65 16 8 H 0.10 5.07 5.14 -2.91 -0.01 5.05 16 9 C 0.27 13.67 4.10 85.63 0.35 14.02 16 10 N -0.60 -24.68 1.88 -671.32 -1.26 -25.95 16 11 C 0.22 8.40 4.72 38.21 0.18 8.58 16 12 C -0.22 -7.00 8.78 22.40 0.20 -6.80 16 13 C -0.07 -1.97 10.04 22.25 0.22 -1.75 16 14 C -0.20 -5.54 10.04 22.29 0.22 -5.32 16 15 C -0.08 -2.68 10.04 22.25 0.22 -2.45 16 16 C -0.22 -8.83 9.16 22.40 0.21 -8.63 16 17 C 0.16 5.33 2.73 46.14 0.13 5.45 16 18 H 0.07 2.31 7.41 -2.38 -0.02 2.29 16 19 C -0.13 -4.51 5.11 31.89 0.16 -4.35 16 20 C -0.11 -2.91 6.83 31.67 0.22 -2.70 16 21 C -0.11 -2.84 6.58 31.32 0.21 -2.64 16 22 C 0.08 2.42 3.21 45.71 0.15 2.57 16 23 H 0.04 1.09 7.27 -2.39 -0.02 1.08 16 24 N -0.83 -28.84 6.64 -165.39 -1.10 -29.94 16 25 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 26 H -0.01 -0.30 6.45 -2.39 -0.02 -0.31 16 27 H 0.01 0.73 6.05 -2.39 -0.01 0.71 16 28 H 0.12 3.49 5.60 -2.91 -0.02 3.48 16 29 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 31 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.10 4.56 6.26 -2.91 -0.02 4.54 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 2.89 5.85 -2.39 -0.01 2.88 16 35 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 1.77 7.92 -2.38 -0.02 1.75 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.33 9.92 9.06 -89.70 -0.81 9.11 16 40 H 0.34 13.00 5.99 -89.69 -0.54 12.46 16 Total: -1.00 -61.98 305.98 2.80 -59.19 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -0.29 Total: 35.47 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 3.14 Total: -30.27 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -2.08 Total: -112.09 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -61.98 2.80 -59.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040988939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.351 kcal (2) G-P(sol) polarization free energy of solvation -61.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds