Wall clock time and date at job start Mon Mar 30 2020 06:39:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86797 * 120.00122 * 2 1
4 4 H 1.48505 * 109.47208 * 180.02562 * 3 2 1
5 5 H 1.48496 * 109.47324 * 300.00439 * 3 2 1
6 6 H 1.48498 * 109.46935 * 60.00732 * 3 2 1
7 7 C 1.37880 * 119.99853 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99995 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99856 * 359.97438 * 7 2 1
10 10 N 1.46497 * 109.46995 * 180.02562 * 9 7 2
11 11 C 1.39674 * 120.00176 * 89.99952 * 10 9 7
12 12 C 1.38913 * 120.07989 * 173.97481 * 11 10 9
13 13 C 1.38102 * 119.92476 * 179.75032 * 12 11 10
14 14 C 1.38281 * 120.07806 * 0.55299 * 13 12 11
15 15 C 1.38288 * 120.14878 * 359.69898 * 14 13 12
16 16 C 1.38109 * 120.07267 * 0.02562 * 15 14 13
17 17 C 1.46504 * 120.00268 * 270.00002 * 10 9 7
18 18 H 1.08998 * 110.02000 * 183.45803 * 17 10 9
19 19 C 1.53874 * 110.03094 * 304.85353 * 17 10 9
20 20 C 1.54266 * 106.59873 * 119.28141 * 19 17 10
21 21 C 1.54887 * 104.19605 * 23.60940 * 20 19 17
22 22 C 1.54269 * 110.03039 * 62.01739 * 17 10 9
23 23 H 1.08999 * 110.48809 * 335.78963 * 22 17 10
24 24 N 1.46903 * 110.48360 * 98.42785 * 22 17 10
25 25 H 0.97004 * 119.99689 * 359.97438 * 1 2 3
26 26 H 1.09005 * 109.47091 * 60.00365 * 9 7 2
27 27 H 1.08998 * 109.47043 * 300.00014 * 9 7 2
28 28 H 1.07999 * 120.03340 * 0.02562 * 12 11 10
29 29 H 1.07998 * 119.95986 * 180.27558 * 13 12 11
30 30 H 1.08001 * 119.92570 * 179.72714 * 14 13 12
31 31 H 1.08000 * 119.96538 * 180.02562 * 15 14 13
32 32 H 1.08001 * 120.03406 * 180.02562 * 16 15 14
33 33 H 1.08995 * 110.03319 * 238.56716 * 19 17 10
34 34 H 1.09002 * 110.02903 * 359.97438 * 19 17 10
35 35 H 1.08997 * 110.48630 * 142.28338 * 20 19 17
36 36 H 1.08994 * 110.48724 * 264.93561 * 20 19 17
37 37 H 1.09004 * 110.76130 * 80.36985 * 21 20 19
38 38 H 1.08999 * 110.75792 * 203.55892 * 21 20 19
39 39 H 1.00901 * 110.99758 * 180.02562 * 24 22 17
40 40 H 1.00900 * 111.00224 * 303.95362 * 24 22 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8904 2.3965 -1.2124
6 1 1.8905 2.3963 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 7 2.2029 -3.6127 -0.0005
11 6 2.6567 -4.1436 1.2091
12 6 3.4597 -5.2770 1.2143
13 6 3.9109 -5.7962 2.4118
14 6 3.5548 -5.1958 3.6055
15 6 2.7513 -4.0703 3.6043
16 6 2.3012 -3.5426 2.4100
17 6 2.6789 -4.1695 -1.2693
18 1 3.3285 -5.0244 -1.0812
19 6 1.4835 -4.5969 -2.1388
20 6 1.5607 -3.7632 -3.4345
21 6 3.0536 -3.3647 -3.5414
22 6 3.4408 -3.0910 -2.0669
23 1 3.1174 -2.0945 -1.7662
24 7 4.8901 -3.2409 -1.8795
25 1 -0.4850 0.8401 0.0004
26 1 0.6239 -2.5567 -0.8904
27 1 0.6246 -2.5571 0.8897
28 1 3.7345 -5.7491 0.2826
29 1 4.5389 -6.6748 2.4163
30 1 3.9055 -5.6064 4.5408
31 1 2.4753 -3.6035 4.5383
32 1 1.6740 -2.6634 2.4097
33 1 1.5534 -5.6590 -2.3735
34 1 0.5493 -4.3904 -1.6166
35 1 1.2641 -4.3650 -4.2935
36 1 0.9337 -2.8753 -3.3547
37 1 3.6441 -4.1848 -3.9499
38 1 3.1713 -2.4666 -4.1477
39 1 5.3962 -2.5386 -2.3979
40 1 5.1330 -3.2124 -0.9006
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000040988942.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:39:09
Heat of formation + Delta-G solvation = 25.648294 kcal
Electronic energy + Delta-G solvation = -20272.578168 eV
Core-core repulsion = 17472.472874 eV
Total energy + Delta-G solvation = -2800.105294 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-39.33408 -37.69078 -34.55456 -32.68877 -32.20468 -30.35545 -29.11302 -27.97688
-26.26560 -25.26911 -22.98315 -21.65293 -20.57047 -20.05478 -18.62543 -17.22452
-16.53404 -15.61665 -15.15838 -14.86983 -14.65084 -14.24963 -13.89113 -13.57431
-13.43999 -12.96206 -12.83170 -12.52830 -12.13744 -11.65053 -11.32715 -11.31014
-11.09295 -10.80536 -10.75517 -10.69124 -10.63274 -10.47212 -10.28670 -10.15696
-9.84847 -9.55069 -8.88859 -8.56351 -8.25732 -8.16548 -6.48964 -6.05791
-4.21270 2.11590 2.32918 3.19134 3.28323 3.30891 4.05590 4.34141
4.59080 4.90776 5.07555 5.14885 5.21367 5.43113 5.55257 5.58670
5.74520 5.91280 5.97050 6.03571 6.08328 6.15823 6.21863 6.29717
6.32599 6.34802 6.44241 6.56570 6.67521 6.70530 6.85989 7.02909
7.12432 7.20388 7.27703 7.35603 7.59996 7.66493 7.74698 7.84663
8.12084 8.29653 8.53622 8.86358 9.44063 10.89900
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.013349 B = 0.009632 C = 0.006760
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2097.013353 B = 2906.160680 C = 4141.320965
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.063 3.937
3 Si 0.891 3.109
4 H -0.274 1.274
5 H -0.284 1.284
6 H -0.283 1.283
7 C -0.525 4.525
8 H 0.058 0.942
9 C 0.249 3.751
10 N -0.607 5.607
11 C 0.238 3.762
12 C -0.219 4.219
13 C -0.079 4.079
14 C -0.205 4.205
15 C -0.078 4.078
16 C -0.187 4.187
17 C 0.155 3.845
18 H 0.087 0.913
19 C -0.132 4.132
20 C -0.119 4.119
21 C -0.114 4.114
22 C 0.055 3.945
23 H 0.092 0.908
24 N -0.845 5.845
25 H 0.263 0.737
26 H 0.035 0.965
27 H 0.032 0.968
28 H 0.115 0.885
29 H 0.107 0.893
30 H 0.104 0.896
31 H 0.109 0.891
32 H 0.132 0.868
33 H 0.060 0.940
34 H 0.074 0.926
35 H 0.058 0.942
36 H 0.070 0.930
37 H 0.067 0.933
38 H 0.058 0.942
39 H 0.333 0.667
40 H 0.340 0.660
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.022 -7.901 -1.694 9.514
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.140 4.140
3 Si 0.718 3.282
4 H -0.199 1.199
5 H -0.210 1.210
6 H -0.209 1.209
7 C -0.564 4.564
8 H 0.076 0.924
9 C 0.129 3.871
10 N -0.313 5.313
11 C 0.132 3.868
12 C -0.242 4.242
13 C -0.098 4.098
14 C -0.225 4.225
15 C -0.097 4.097
16 C -0.210 4.210
17 C 0.049 3.951
18 H 0.105 0.895
19 C -0.171 4.171
20 C -0.158 4.158
21 C -0.152 4.152
22 C -0.057 4.057
23 H 0.109 0.891
24 N -0.373 5.373
25 H 0.073 0.927
26 H 0.053 0.947
27 H 0.050 0.950
28 H 0.133 0.867
29 H 0.125 0.875
30 H 0.122 0.878
31 H 0.128 0.872
32 H 0.149 0.851
33 H 0.078 0.922
34 H 0.092 0.908
35 H 0.077 0.923
36 H 0.089 0.911
37 H 0.085 0.915
38 H 0.077 0.923
39 H 0.144 0.856
40 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 4.657 -8.396 -2.228 9.856
hybrid contribution 0.403 2.047 0.444 2.133
sum 5.061 -6.349 -1.784 8.313
Atomic orbital electron populations
1.69933 1.05909 1.26947 1.50133 1.24948 0.94814 0.99076 0.95140
0.86557 0.80069 0.83808 0.77721 1.19894 1.20996 1.20852 1.21548
0.93286 0.90657 1.50870 0.92374 1.19219 0.87452 0.82451 0.97981
1.47272 1.47132 1.35913 1.00944 1.17946 0.91303 0.90788 0.86801
1.20643 1.06289 0.99257 0.98023 1.20675 0.98284 0.98483 0.92310
1.20656 1.05096 0.99648 0.97142 1.20825 0.96459 0.95374 0.97079
1.20933 1.06228 1.02931 0.90887 1.21511 0.94180 0.95489 0.83871
0.89489 1.22462 0.99546 0.98876 0.96212 1.22253 0.96726 0.99969
0.96808 1.22434 0.95850 1.00687 0.96258 1.23002 0.87254 1.01072
0.94350 0.89071 1.58916 1.06729 1.56094 1.15551 0.92714 0.94743
0.95036 0.86741 0.87473 0.87750 0.87242 0.85065 0.92167 0.90767
0.92297 0.91102 0.91472 0.92342 0.85624 0.84844
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.68 13.29 55.43 0.74 -23.94 16
2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
3 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16
4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16
5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
7 C -0.52 -13.43 7.42 -34.44 -0.26 -13.68 16
8 H 0.06 1.53 7.19 -52.49 -0.38 1.15 16
9 C 0.25 5.91 4.20 -5.19 -0.02 5.89 16
10 N -0.61 -12.32 2.53 -164.27 -0.42 -12.74 16
11 C 0.24 4.73 6.54 -83.79 -0.55 4.18 16
12 C -0.22 -3.85 9.31 -39.38 -0.37 -4.22 16
13 C -0.08 -1.26 10.04 -39.62 -0.40 -1.66 16
14 C -0.20 -3.29 10.04 -39.55 -0.40 -3.69 16
15 C -0.08 -1.37 10.04 -39.61 -0.40 -1.77 16
16 C -0.19 -3.78 9.16 -39.38 -0.36 -4.14 16
17 C 0.15 2.75 2.94 -66.81 -0.20 2.55 16
18 H 0.09 1.50 5.26 -51.93 -0.27 1.23 16
19 C -0.13 -2.17 5.97 -25.61 -0.15 -2.32 16
20 C -0.12 -1.84 6.83 -25.07 -0.17 -2.01 16
21 C -0.11 -1.75 6.58 -24.74 -0.16 -1.91 16
22 C 0.06 0.97 3.59 -66.05 -0.24 0.73 16
23 H 0.09 1.94 4.93 -51.93 -0.26 1.69 16
24 N -0.84 -13.31 9.27 -3.26 -0.03 -13.34 16
25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16
26 H 0.03 0.87 6.57 -51.93 -0.34 0.53 16
27 H 0.03 0.82 6.45 -51.93 -0.34 0.48 16
28 H 0.11 1.89 5.76 -52.49 -0.30 1.59 16
29 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16
30 H 0.10 1.42 8.06 -52.49 -0.42 1.00 16
31 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16
32 H 0.13 2.93 6.26 -52.49 -0.33 2.60 16
33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
34 H 0.07 1.34 6.67 -51.93 -0.35 0.99 16
35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16
37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
39 H 0.33 4.76 9.08 -39.29 -0.36 4.40 16
40 H 0.34 5.62 9.02 -39.29 -0.35 5.26 16
LS Contribution 314.43 15.07 4.74 4.74
Total: -1.00 -26.49 314.43 -9.54 -36.04
By element:
Atomic # 1 Polarization: 19.83 SS G_CDS: -5.79 Total: 14.05 kcal
Atomic # 6 Polarization: -16.73 SS G_CDS: -3.76 Total: -20.50 kcal
Atomic # 7 Polarization: -50.31 SS G_CDS: 0.29 Total: -50.02 kcal
Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal
Total LS contribution 4.74 Total: 4.74 kcal
Total: -26.49 -9.54 -36.04 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000040988942.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.683 kcal
(2) G-P(sol) polarization free energy of solvation -26.493 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.190 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.035 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.648 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds