Wall clock time and date at job start Mon Mar 30 2020 06:39:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86797 * 120.00122 * 2 1
4 4 H 1.48505 * 109.47208 * 180.02562 * 3 2 1
5 5 H 1.48496 * 109.47324 * 300.00439 * 3 2 1
6 6 H 1.48498 * 109.46935 * 60.00732 * 3 2 1
7 7 C 1.37880 * 119.99853 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99995 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99856 * 359.97438 * 7 2 1
10 10 N 1.46497 * 109.46995 * 180.02562 * 9 7 2
11 11 C 1.39674 * 120.00176 * 89.99952 * 10 9 7
12 12 C 1.38913 * 120.07989 * 173.97481 * 11 10 9
13 13 C 1.38102 * 119.92476 * 179.75032 * 12 11 10
14 14 C 1.38281 * 120.07806 * 0.55299 * 13 12 11
15 15 C 1.38288 * 120.14878 * 359.69898 * 14 13 12
16 16 C 1.38109 * 120.07267 * 0.02562 * 15 14 13
17 17 C 1.46504 * 120.00268 * 270.00002 * 10 9 7
18 18 H 1.08998 * 110.02000 * 183.45803 * 17 10 9
19 19 C 1.53874 * 110.03094 * 304.85353 * 17 10 9
20 20 C 1.54266 * 106.59873 * 119.28141 * 19 17 10
21 21 C 1.54887 * 104.19605 * 23.60940 * 20 19 17
22 22 C 1.54269 * 110.03039 * 62.01739 * 17 10 9
23 23 H 1.08999 * 110.48809 * 335.78963 * 22 17 10
24 24 N 1.46903 * 110.48360 * 98.42785 * 22 17 10
25 25 H 0.97004 * 119.99689 * 359.97438 * 1 2 3
26 26 H 1.09005 * 109.47091 * 60.00365 * 9 7 2
27 27 H 1.08998 * 109.47043 * 300.00014 * 9 7 2
28 28 H 1.07999 * 120.03340 * 0.02562 * 12 11 10
29 29 H 1.07998 * 119.95986 * 180.27558 * 13 12 11
30 30 H 1.08001 * 119.92570 * 179.72714 * 14 13 12
31 31 H 1.08000 * 119.96538 * 180.02562 * 15 14 13
32 32 H 1.08001 * 120.03406 * 180.02562 * 16 15 14
33 33 H 1.08995 * 110.03319 * 238.56716 * 19 17 10
34 34 H 1.09002 * 110.02903 * 359.97438 * 19 17 10
35 35 H 1.08997 * 110.48630 * 142.28338 * 20 19 17
36 36 H 1.08994 * 110.48724 * 264.93561 * 20 19 17
37 37 H 1.09004 * 110.76130 * 80.36985 * 21 20 19
38 38 H 1.08999 * 110.75792 * 203.55892 * 21 20 19
39 39 H 1.00901 * 110.99758 * 180.02562 * 24 22 17
40 40 H 1.00900 * 111.00224 * 303.95362 * 24 22 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8904 2.3965 -1.2124
6 1 1.8905 2.3963 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 7 2.2029 -3.6127 -0.0005
11 6 2.6567 -4.1436 1.2091
12 6 3.4597 -5.2770 1.2143
13 6 3.9109 -5.7962 2.4118
14 6 3.5548 -5.1958 3.6055
15 6 2.7513 -4.0703 3.6043
16 6 2.3012 -3.5426 2.4100
17 6 2.6789 -4.1695 -1.2693
18 1 3.3285 -5.0244 -1.0812
19 6 1.4835 -4.5969 -2.1388
20 6 1.5607 -3.7632 -3.4345
21 6 3.0536 -3.3647 -3.5414
22 6 3.4408 -3.0910 -2.0669
23 1 3.1174 -2.0945 -1.7662
24 7 4.8901 -3.2409 -1.8795
25 1 -0.4850 0.8401 0.0004
26 1 0.6239 -2.5567 -0.8904
27 1 0.6246 -2.5571 0.8897
28 1 3.7345 -5.7491 0.2826
29 1 4.5389 -6.6748 2.4163
30 1 3.9055 -5.6064 4.5408
31 1 2.4753 -3.6035 4.5383
32 1 1.6740 -2.6634 2.4097
33 1 1.5534 -5.6590 -2.3735
34 1 0.5493 -4.3904 -1.6166
35 1 1.2641 -4.3650 -4.2935
36 1 0.9337 -2.8753 -3.3547
37 1 3.6441 -4.1848 -3.9499
38 1 3.1713 -2.4666 -4.1477
39 1 5.3962 -2.5386 -2.3979
40 1 5.1330 -3.2124 -0.9006
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000040988942.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:39:08
Heat of formation + Delta-G solvation = 10.884663 kcal
Electronic energy + Delta-G solvation = -20273.218367 eV
Core-core repulsion = 17472.472874 eV
Total energy + Delta-G solvation = -2800.745493 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.78492 -39.05282 -36.13815 -34.60024 -33.51041 -31.79613 -30.62688 -29.59527
-27.69262 -26.82227 -24.74080 -23.08189 -22.00310 -21.40135 -20.08427 -18.70273
-18.54737 -17.05979 -16.74663 -16.31561 -16.01567 -15.84731 -15.26537 -14.99139
-14.93201 -14.52731 -14.30688 -14.02857 -13.85995 -13.17487 -13.09317 -12.77149
-12.71293 -12.57574 -12.24614 -12.10239 -12.01838 -11.98711 -11.80332 -11.56166
-11.51150 -11.12932 -10.63266 -10.44029 -9.65368 -9.53946 -8.34906 -7.78966
-6.31717 0.71651 0.93491 1.31430 1.34541 1.44011 2.31320 2.58048
3.07444 3.18630 3.58171 3.75857 3.90878 4.06406 4.26071 4.28682
4.42536 4.62209 4.65432 4.66482 4.76733 4.78828 4.85220 4.89150
4.95636 5.06485 5.12958 5.16186 5.18458 5.31445 5.35237 5.40081
5.50866 5.63755 5.72582 5.79833 5.90838 6.10834 6.22026 6.29770
6.55255 6.58804 6.87777 7.01739 7.37400 8.84832
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.013349 B = 0.009632 C = 0.006760
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2097.013353 B = 2906.160680 C = 4141.320965
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.924 5.924
2 C 0.013 3.987
3 Si 0.951 3.049
4 H -0.271 1.271
5 H -0.278 1.278
6 H -0.281 1.281
7 C -0.518 4.518
8 H 0.049 0.951
9 C 0.272 3.728
10 N -0.614 5.614
11 C 0.213 3.787
12 C -0.217 4.217
13 C -0.072 4.072
14 C -0.197 4.197
15 C -0.082 4.082
16 C -0.219 4.219
17 C 0.154 3.846
18 H 0.100 0.900
19 C -0.131 4.131
20 C -0.116 4.116
21 C -0.105 4.105
22 C 0.056 3.944
23 H 0.049 0.951
24 N -0.832 5.832
25 H 0.264 0.736
26 H 0.014 0.986
27 H 0.000 1.000
28 H 0.128 0.872
29 H 0.146 0.854
30 H 0.139 0.861
31 H 0.126 0.874
32 H 0.094 0.906
33 H 0.087 0.913
34 H 0.048 0.952
35 H 0.089 0.911
36 H 0.042 0.958
37 H 0.087 0.913
38 H 0.061 0.939
39 H 0.342 0.658
40 H 0.335 0.665
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.257 -9.730 -1.828 12.275
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.186 4.186
3 Si 0.777 3.223
4 H -0.196 1.196
5 H -0.204 1.204
6 H -0.207 1.207
7 C -0.557 4.557
8 H 0.067 0.933
9 C 0.151 3.849
10 N -0.320 5.320
11 C 0.108 3.892
12 C -0.240 4.240
13 C -0.091 4.091
14 C -0.217 4.217
15 C -0.101 4.101
16 C -0.242 4.242
17 C 0.049 3.951
18 H 0.117 0.883
19 C -0.170 4.170
20 C -0.154 4.154
21 C -0.143 4.143
22 C -0.057 4.057
23 H 0.067 0.933
24 N -0.360 5.360
25 H 0.073 0.927
26 H 0.032 0.968
27 H 0.018 0.982
28 H 0.146 0.854
29 H 0.163 0.837
30 H 0.157 0.843
31 H 0.144 0.856
32 H 0.112 0.888
33 H 0.106 0.894
34 H 0.066 0.934
35 H 0.107 0.893
36 H 0.061 0.939
37 H 0.105 0.895
38 H 0.080 0.920
39 H 0.154 0.846
40 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 6.919 -10.244 -2.360 12.585
hybrid contribution -0.250 2.521 0.576 2.598
sum 6.669 -7.722 -1.785 10.359
Atomic orbital electron populations
1.70040 1.07223 1.27661 1.51554 1.25676 0.95537 1.02205 0.95145
0.85609 0.78873 0.80081 0.77723 1.19574 1.20401 1.20703 1.21667
0.92755 0.91601 1.49629 0.93296 1.18641 0.87514 0.83457 0.95320
1.47079 1.47140 1.35488 1.02322 1.18213 0.92612 0.92078 0.86272
1.20836 1.05421 0.98169 0.99559 1.21135 0.97506 0.99064 0.91369
1.21069 1.03419 0.98345 0.98837 1.21070 0.96368 0.96029 0.96628
1.20835 1.07668 1.02933 0.92746 1.21692 0.94794 0.95651 0.82941
0.88274 1.22470 0.97730 1.00649 0.96154 1.22226 0.96508 0.99168
0.97470 1.22393 0.95721 1.01554 0.94637 1.22851 0.88189 0.98748
0.95905 0.93341 1.58939 1.05580 1.56186 1.15317 0.92674 0.96764
0.98214 0.85405 0.83660 0.84315 0.85604 0.88778 0.89420 0.93360
0.89267 0.93878 0.89474 0.92013 0.84627 0.85368
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.55 13.29 21.45 0.28 -53.27 16
2 C 0.01 0.74 5.46 84.66 0.46 1.20 16
3 Si 0.95 43.69 29.54 68.60 2.03 45.72 16
4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16
5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
6 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16
7 C -0.52 -27.82 7.42 25.60 0.19 -27.63 16
8 H 0.05 2.68 7.19 -2.91 -0.02 2.65 16
9 C 0.27 13.83 4.20 85.63 0.36 14.19 16
10 N -0.61 -25.81 2.53 -673.63 -1.70 -27.51 16
11 C 0.21 8.57 6.54 38.22 0.25 8.82 16
12 C -0.22 -7.21 9.31 22.40 0.21 -7.00 16
13 C -0.07 -2.04 10.04 22.25 0.22 -1.82 16
14 C -0.20 -5.66 10.04 22.29 0.22 -5.44 16
15 C -0.08 -2.81 10.04 22.25 0.22 -2.59 16
16 C -0.22 -9.18 9.16 22.40 0.21 -8.98 16
17 C 0.15 5.41 2.94 45.72 0.13 5.55 16
18 H 0.10 3.24 5.26 -2.39 -0.01 3.23 16
19 C -0.13 -4.25 5.97 31.32 0.19 -4.06 16
20 C -0.12 -3.48 6.83 31.67 0.22 -3.26 16
21 C -0.10 -3.06 6.58 31.88 0.21 -2.85 16
22 C 0.06 1.93 3.59 45.99 0.17 2.10 16
23 H 0.05 2.13 4.93 -2.39 -0.01 2.12 16
24 N -0.83 -25.13 9.27 -164.23 -1.52 -26.65 16
25 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16
26 H 0.01 0.78 6.57 -2.38 -0.02 0.76 16
27 H 0.00 -0.01 6.45 -2.39 -0.02 -0.02 16
28 H 0.13 3.85 5.76 -2.91 -0.02 3.83 16
29 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16
30 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16
31 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16
32 H 0.09 4.57 6.26 -2.91 -0.02 4.56 16
33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16
34 H 0.05 1.81 6.67 -2.39 -0.02 1.79 16
35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16
36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16
37 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16
38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16
39 H 0.34 9.28 9.08 -89.69 -0.81 8.47 16
40 H 0.34 10.75 9.02 -89.69 -0.81 9.94 16
Total: -1.00 -59.80 314.43 1.78 -58.03
By element:
Atomic # 1 Polarization: 36.03 SS G_CDS: -0.57 Total: 35.46 kcal
Atomic # 6 Polarization: -35.04 SS G_CDS: 3.26 Total: -31.78 kcal
Atomic # 7 Polarization: -104.49 SS G_CDS: -2.94 Total: -107.43 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal
Total: -59.80 1.78 -58.03 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000040988942.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.912 kcal
(2) G-P(sol) polarization free energy of solvation -59.804 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.108 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.027 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.885 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds