Wall clock time and date at job start Mon Mar 30 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46629 * 2 1 4 4 C 1.52993 * 109.47185 * 119.99703 * 2 1 3 5 5 C 1.50701 * 109.47366 * 175.00328 * 4 2 1 6 6 C 1.38398 * 119.82395 * 89.99775 * 5 4 2 7 7 C 1.37888 * 120.17306 * 180.02562 * 6 5 4 8 8 C 1.39850 * 119.82189 * 0.02562 * 7 6 5 9 9 C 1.47171 * 120.16950 * 179.97438 * 8 7 6 10 10 O 1.21248 * 120.00005 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.99643 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.46925 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47300 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99822 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99769 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00300 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47086 * 59.99960 * 17 15 13 19 19 H 1.48503 * 109.47151 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46879 * 299.99904 * 17 15 13 21 21 C 1.39848 * 119.65819 * 0.25580 * 8 7 6 22 22 C 1.37887 * 119.82503 * 359.50942 * 21 8 7 23 23 H 1.08994 * 109.47808 * 300.00028 * 1 2 3 24 24 H 1.09001 * 109.47403 * 60.00629 * 1 2 3 25 25 H 1.09009 * 109.46722 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47201 * 240.00309 * 2 1 3 27 27 H 1.08999 * 109.46712 * 59.99832 * 3 2 1 28 28 H 1.09002 * 109.46748 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46715 * 299.99793 * 3 2 1 30 30 H 1.09005 * 109.47059 * 55.00027 * 4 2 1 31 31 H 1.09005 * 109.47431 * 295.00636 * 4 2 1 32 32 H 1.08006 * 119.91880 * 0.02936 * 6 5 4 33 33 H 1.08001 * 120.08797 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.47318 * 299.99505 * 11 9 8 35 35 H 1.09000 * 109.47161 * 60.00135 * 11 9 8 36 36 H 1.09004 * 109.46930 * 299.99901 * 12 11 9 37 37 H 1.09004 * 109.47059 * 59.99503 * 12 11 9 38 38 H 0.97000 * 120.00540 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.08959 * 179.72319 * 21 8 7 40 40 H 1.08001 * 119.91681 * 180.20577 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8292 1.1889 6 6 4.3265 0.1747 1.7292 7 6 5.7014 0.0835 1.6776 8 6 6.3026 -1.0271 1.0768 9 6 7.7693 -1.1321 1.0169 10 8 8.4597 -0.2546 1.4896 11 6 8.4131 -2.3304 0.3681 12 6 9.9352 -2.1929 0.4399 13 6 10.5790 -3.3907 -0.2095 14 1 9.9641 -4.1717 -0.6316 15 6 11.9531 -3.4891 -0.2657 16 7 12.7020 -2.5377 0.2479 17 14 12.7512 -4.9735 -1.0713 18 1 12.3274 -5.0531 -2.4923 19 1 14.2285 -4.8401 -1.0015 20 1 12.3320 -6.2078 -0.3598 21 6 5.5028 -2.0346 0.5279 22 6 4.1293 -1.9310 0.5918 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6054 -1.7197 1.2952 31 1 1.7516 -0.1582 2.1370 32 1 3.8607 1.0320 2.1925 33 1 6.3123 0.8679 2.0992 34 1 8.1055 -3.2359 0.8910 35 1 8.1021 -2.3897 -0.6749 36 1 10.2433 -1.2873 -0.0829 37 1 10.2459 -2.1337 1.4830 38 1 13.6687 -2.6070 0.2087 39 1 5.9598 -2.8931 0.0583 40 1 3.5103 -2.7098 0.1714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041251535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:01 Heat of formation + Delta-G solvation = -50.019305 kcal Electronic energy + Delta-G solvation = -18388.626292 eV Core-core repulsion = 15552.947054 eV Total energy + Delta-G solvation = -2835.679238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.91764 -38.37018 -36.20171 -33.51118 -31.92065 -31.21068 -30.57291 -27.45924 -27.35852 -25.55479 -22.88640 -22.55191 -21.12621 -20.20592 -18.98650 -16.99096 -16.15048 -15.61213 -15.39824 -14.76193 -14.72153 -14.47401 -14.42680 -14.16090 -13.49124 -13.46487 -13.12132 -12.64433 -12.49827 -12.22579 -12.16196 -11.96973 -11.81928 -11.22935 -11.11740 -11.00495 -10.94000 -10.90702 -10.85342 -10.60399 -9.95181 -9.71354 -9.16631 -8.95157 -8.85295 -8.65825 -8.32023 -5.96004 -4.00364 0.84904 1.41086 2.80910 3.34702 3.39267 3.41037 3.90389 4.40593 4.47931 4.54872 4.62559 4.67833 4.84652 4.98109 5.03719 5.20253 5.33934 5.37436 5.38836 5.43638 5.51858 5.55544 5.61987 5.70939 5.76117 5.84470 5.97948 6.02908 6.04257 6.07297 6.24830 6.26559 6.36945 6.52073 6.55924 6.91838 7.01437 7.72417 7.84032 8.05338 8.12418 8.43163 9.07293 9.63241 11.15045 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.041465 B = 0.003271 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.106770 B = 8558.899545 C = 8966.888700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.079 4.079 5 C -0.060 4.060 6 C -0.132 4.132 7 C -0.066 4.066 8 C -0.163 4.163 9 C 0.386 3.614 10 O -0.450 6.450 11 C -0.156 4.156 12 C 0.031 3.969 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.891 5.891 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.069 4.069 22 C -0.133 4.133 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.261 0.739 39 H 0.135 0.865 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.712 4.137 0.669 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.210 4.210 4 C -0.116 4.116 5 C -0.060 4.060 6 C -0.150 4.150 7 C -0.085 4.085 8 C -0.164 4.164 9 C 0.264 3.736 10 O -0.324 6.324 11 C -0.193 4.193 12 C -0.006 4.006 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.530 5.530 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.087 4.087 22 C -0.151 4.151 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.153 0.847 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.150 4.663 0.950 24.614 hybrid contribution 0.471 -0.856 -0.462 1.081 sum -23.679 3.807 0.488 23.988 Atomic orbital electron populations 1.21853 0.95088 1.01711 1.01805 1.21086 0.95397 0.96624 0.97905 1.21943 1.01923 0.95602 1.01503 1.20739 0.90992 1.01347 0.98535 1.20049 0.95542 0.94081 0.96362 1.20972 0.93312 0.99024 1.01674 1.21455 0.94599 0.96867 0.95532 1.20922 0.96284 0.96556 1.02612 1.23076 0.87026 0.87691 0.75856 1.90480 1.65633 1.39533 1.36789 1.22151 1.01388 0.95329 1.00466 1.18944 0.86304 0.97317 0.98052 1.21189 0.91530 1.05780 1.38000 0.92614 1.25034 0.97516 0.96276 0.95589 1.69981 1.04954 1.32882 1.45169 0.86649 0.78226 0.83133 0.79911 1.20226 1.21282 1.20234 1.21543 0.93369 0.97797 0.96007 1.20987 0.94687 0.98275 1.01187 0.92685 0.92632 0.92678 0.90952 0.92784 0.91921 0.92853 0.90847 0.90917 0.85915 0.85128 0.89695 0.89700 0.95989 0.95982 0.92888 0.84695 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.09 -0.68 2.91 -90.62 -0.26 -0.94 16 3 C -0.15 -1.18 8.76 37.16 0.33 -0.85 16 4 C -0.08 -0.61 4.83 -27.89 -0.13 -0.75 16 5 C -0.06 -0.62 4.72 -104.50 -0.49 -1.12 16 6 C -0.13 -1.49 7.93 -39.65 -0.31 -1.81 16 7 C -0.07 -0.94 9.60 -39.11 -0.38 -1.31 16 8 C -0.16 -2.55 5.87 -105.07 -0.62 -3.17 16 9 C 0.39 7.58 7.12 -30.68 -0.22 7.36 16 10 O -0.45 -10.36 15.98 5.59 0.09 -10.27 16 11 C -0.16 -3.22 4.25 -27.88 -0.12 -3.33 16 12 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 13 C -0.53 -15.07 9.11 -34.44 -0.31 -15.38 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.63 13.29 55.43 0.74 -26.89 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.07 -0.90 9.47 -39.11 -0.37 -1.27 16 22 C -0.13 -1.46 9.68 -39.65 -0.38 -1.84 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.57 6.26 -51.93 -0.33 0.24 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.12 1.13 8.03 -52.48 -0.42 0.71 16 33 H 0.13 1.87 7.65 -52.49 -0.40 1.47 16 34 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 35 H 0.08 1.60 8.08 -51.93 -0.42 1.18 16 36 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.02 0.65 8.10 -51.93 -0.42 0.22 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.14 1.61 7.05 -52.48 -0.37 1.24 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 333.77 15.07 5.03 5.03 Total: -1.00 -32.66 333.77 -8.86 -41.52 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -6.54 Total: -3.48 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -3.15 Total: -22.67 kcal Atomic # 7 Polarization: -27.63 SS G_CDS: 0.74 Total: -26.89 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.66 -8.86 -41.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041251535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.500 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds