Wall clock time and date at job start Mon Mar 30 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46629 * 2 1 4 4 C 1.52993 * 109.47185 * 119.99703 * 2 1 3 5 5 C 1.50701 * 109.47366 * 175.00328 * 4 2 1 6 6 C 1.38398 * 119.82395 * 89.99775 * 5 4 2 7 7 C 1.37888 * 120.17306 * 180.02562 * 6 5 4 8 8 C 1.39850 * 119.82189 * 0.02562 * 7 6 5 9 9 C 1.47171 * 120.16950 * 179.97438 * 8 7 6 10 10 O 1.21248 * 120.00005 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.99643 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.46925 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47300 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99822 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99769 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00300 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47086 * 59.99960 * 17 15 13 19 19 H 1.48503 * 109.47151 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46879 * 299.99904 * 17 15 13 21 21 C 1.39848 * 119.65819 * 0.25580 * 8 7 6 22 22 C 1.37887 * 119.82503 * 359.50942 * 21 8 7 23 23 H 1.08994 * 109.47808 * 300.00028 * 1 2 3 24 24 H 1.09001 * 109.47403 * 60.00629 * 1 2 3 25 25 H 1.09009 * 109.46722 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47201 * 240.00309 * 2 1 3 27 27 H 1.08999 * 109.46712 * 59.99832 * 3 2 1 28 28 H 1.09002 * 109.46748 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46715 * 299.99793 * 3 2 1 30 30 H 1.09005 * 109.47059 * 55.00027 * 4 2 1 31 31 H 1.09005 * 109.47431 * 295.00636 * 4 2 1 32 32 H 1.08006 * 119.91880 * 0.02936 * 6 5 4 33 33 H 1.08001 * 120.08797 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.47318 * 299.99505 * 11 9 8 35 35 H 1.09000 * 109.47161 * 60.00135 * 11 9 8 36 36 H 1.09004 * 109.46930 * 299.99901 * 12 11 9 37 37 H 1.09004 * 109.47059 * 59.99503 * 12 11 9 38 38 H 0.97000 * 120.00540 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.08959 * 179.72319 * 21 8 7 40 40 H 1.08001 * 119.91681 * 180.20577 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8292 1.1889 6 6 4.3265 0.1747 1.7292 7 6 5.7014 0.0835 1.6776 8 6 6.3026 -1.0271 1.0768 9 6 7.7693 -1.1321 1.0169 10 8 8.4597 -0.2546 1.4896 11 6 8.4131 -2.3304 0.3681 12 6 9.9352 -2.1929 0.4399 13 6 10.5790 -3.3907 -0.2095 14 1 9.9641 -4.1717 -0.6316 15 6 11.9531 -3.4891 -0.2657 16 7 12.7020 -2.5377 0.2479 17 14 12.7512 -4.9735 -1.0713 18 1 12.3274 -5.0531 -2.4923 19 1 14.2285 -4.8401 -1.0015 20 1 12.3320 -6.2078 -0.3598 21 6 5.5028 -2.0346 0.5279 22 6 4.1293 -1.9310 0.5918 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6054 -1.7197 1.2952 31 1 1.7516 -0.1582 2.1370 32 1 3.8607 1.0320 2.1925 33 1 6.3123 0.8679 2.0992 34 1 8.1055 -3.2359 0.8910 35 1 8.1021 -2.3897 -0.6749 36 1 10.2433 -1.2873 -0.0829 37 1 10.2459 -2.1337 1.4830 38 1 13.6687 -2.6070 0.2087 39 1 5.9598 -2.8931 0.0583 40 1 3.5103 -2.7098 0.1714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041251535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:00 Heat of formation + Delta-G solvation = -67.277168 kcal Electronic energy + Delta-G solvation = -18389.374649 eV Core-core repulsion = 15552.947054 eV Total energy + Delta-G solvation = -2836.427596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10835 -39.65304 -36.95310 -35.62930 -33.39020 -32.40447 -31.88108 -28.64381 -27.97089 -27.15251 -24.39591 -23.52947 -22.59874 -20.84817 -20.42973 -18.78554 -17.68460 -16.71562 -16.52454 -16.35382 -16.33362 -15.61828 -15.33806 -15.13816 -14.72317 -14.40811 -14.25417 -14.23063 -13.83543 -13.26808 -13.23305 -12.98767 -12.80595 -12.78174 -12.52153 -12.51635 -11.95250 -11.93876 -11.75505 -11.66037 -11.60263 -11.46466 -11.35287 -10.58073 -10.50754 -9.91279 -9.65397 -8.19876 -6.34350 -0.29039 0.45351 1.40730 1.45531 1.48076 1.53320 2.40664 2.83980 3.12763 3.14975 3.77609 3.85452 4.03757 4.09086 4.13533 4.29065 4.36953 4.42896 4.47328 4.53177 4.62395 4.78879 4.82635 4.85269 4.91117 5.04535 5.08774 5.09080 5.10037 5.17819 5.35017 5.39058 5.45069 5.45703 5.51697 5.53628 5.58663 5.66555 5.81260 5.98896 6.15096 6.63507 6.85045 7.35974 8.92729 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.041465 B = 0.003271 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.106770 B = 8558.899545 C = 8966.888700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.155 4.155 4 C -0.077 4.077 5 C -0.046 4.046 6 C -0.129 4.129 7 C -0.079 4.079 8 C -0.191 4.191 9 C 0.389 3.611 10 O -0.503 6.503 11 C -0.147 4.147 12 C 0.035 3.965 13 C -0.545 4.545 14 H 0.076 0.924 15 C -0.008 4.008 16 N -0.939 5.939 17 Si 0.975 3.025 18 H -0.262 1.262 19 H -0.287 1.287 20 H -0.262 1.262 21 C -0.068 4.068 22 C -0.130 4.130 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.108 0.892 36 H -0.019 1.019 37 H -0.019 1.019 38 H 0.263 0.737 39 H 0.147 0.853 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.977 2.118 -0.286 28.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.212 4.212 4 C -0.114 4.114 5 C -0.046 4.046 6 C -0.147 4.147 7 C -0.098 4.098 8 C -0.191 4.191 9 C 0.270 3.730 10 O -0.382 6.382 11 C -0.184 4.184 12 C -0.002 4.002 13 C -0.582 4.582 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.799 3.201 18 H -0.186 1.186 19 H -0.213 1.213 20 H -0.186 1.186 21 C -0.086 4.086 22 C -0.148 4.148 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.162 0.838 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.000 1.000 37 H 0.000 1.000 38 H 0.072 0.928 39 H 0.165 0.835 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -27.455 2.627 -0.014 27.580 hybrid contribution 1.365 -0.167 -0.150 1.383 sum -26.090 2.461 -0.164 26.207 Atomic orbital electron populations 1.21824 0.93849 1.02351 1.02156 1.21064 0.96362 0.95969 0.97383 1.21962 1.00818 0.96315 1.02090 1.20824 0.88674 1.02702 0.99193 1.20454 0.97168 0.92966 0.94009 1.21191 0.91984 1.00112 1.01390 1.21470 0.95962 0.96321 0.96009 1.20552 0.93568 0.98905 1.06122 1.23305 0.89163 0.86293 0.74212 1.90460 1.67207 1.41099 1.39427 1.22010 0.96761 0.97095 1.02498 1.18763 0.91097 0.95519 0.94804 1.21693 0.92306 1.06388 1.37851 0.90562 1.26172 0.98402 0.99845 0.96117 1.70167 1.05337 1.35576 1.46821 0.85354 0.76723 0.78754 0.79310 1.18609 1.21269 1.18617 1.21711 0.94284 0.97199 0.95383 1.21352 0.93923 0.99101 1.00417 0.92171 0.92534 0.91902 0.91485 0.91953 0.93574 0.92666 0.89109 0.89808 0.83752 0.86612 0.87380 0.87400 1.00049 1.00032 0.92805 0.83518 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.19 71.98 0.66 -0.59 16 2 C -0.09 -1.02 2.91 -10.79 -0.03 -1.05 16 3 C -0.15 -2.03 8.76 71.98 0.63 -1.40 16 4 C -0.08 -0.88 4.83 29.85 0.14 -0.74 16 5 C -0.05 -0.81 4.72 -19.79 -0.09 -0.90 16 6 C -0.13 -2.71 7.93 22.22 0.18 -2.53 16 7 C -0.08 -2.27 9.60 22.58 0.22 -2.05 16 8 C -0.19 -6.01 5.87 -20.15 -0.12 -6.13 16 9 C 0.39 16.01 7.12 28.04 0.20 16.21 16 10 O -0.50 -25.12 15.98 -2.93 -0.05 -25.17 16 11 C -0.15 -6.16 4.25 29.85 0.13 -6.03 16 12 C 0.04 2.02 4.26 29.85 0.13 2.15 16 13 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 14 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 15 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 16 N -0.94 -60.42 13.29 21.45 0.28 -60.13 16 17 Si 0.98 44.76 29.54 68.60 2.03 46.79 16 18 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 C -0.07 -1.64 9.47 22.58 0.21 -1.42 16 22 C -0.13 -2.40 9.68 22.23 0.22 -2.19 16 23 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.76 6.26 -2.39 -0.01 0.74 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.81 8.08 -2.38 -0.02 0.79 16 31 H 0.08 0.84 8.08 -2.38 -0.02 0.82 16 32 H 0.14 2.35 8.03 -2.91 -0.02 2.32 16 33 H 0.12 3.57 7.65 -2.91 -0.02 3.54 16 34 H 0.11 4.02 8.09 -2.39 -0.02 4.00 16 35 H 0.11 4.01 8.08 -2.39 -0.02 3.99 16 36 H -0.02 -1.21 8.10 -2.38 -0.02 -1.23 16 37 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 38 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.15 3.12 7.05 -2.91 -0.02 3.10 16 40 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -75.16 333.77 6.42 -68.74 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 0.99 Total: 7.83 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 3.16 Total: -38.06 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.28 Total: -60.13 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.05 Total: -25.17 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -75.16 6.42 -68.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041251535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.467 kcal (2) G-P(sol) polarization free energy of solvation -75.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds