Wall clock time and date at job start Mon Mar 30 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09001 * 109.46922 * 305.00135 * 3 2 1 5 5 C 1.53006 * 109.47164 * 64.99887 * 3 2 1 6 6 C 1.50698 * 109.47342 * 185.00123 * 3 2 1 7 7 C 1.38412 * 119.81890 * 299.72596 * 6 3 2 8 8 C 1.37889 * 120.16742 * 179.76405 * 7 6 3 9 9 C 1.39857 * 119.82433 * 0.48765 * 8 7 6 10 10 C 1.47163 * 120.17051 * 179.74711 * 9 8 7 11 11 O 1.21261 * 119.99867 * 180.02562 * 10 9 8 12 12 C 1.50697 * 120.00290 * 0.02562 * 10 9 8 13 13 C 1.53005 * 109.47170 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.46647 * 179.97438 * 13 12 10 15 15 H 1.08003 * 120.00540 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99559 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99881 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00384 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46910 * 89.99939 * 18 16 14 20 20 H 1.48490 * 109.47469 * 209.99703 * 18 16 14 21 21 H 1.48498 * 109.46640 * 330.00169 * 18 16 14 22 22 C 1.39858 * 119.65577 * 359.76364 * 9 8 7 23 23 C 1.37884 * 119.82333 * 0.02562 * 22 9 8 24 24 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46772 * 299.99985 * 1 2 3 26 26 H 1.08998 * 109.46554 * 60.00185 * 1 2 3 27 27 H 1.09000 * 109.46772 * 240.00015 * 2 1 3 28 28 H 1.08994 * 109.46772 * 120.00268 * 2 1 3 29 29 H 1.09001 * 109.47002 * 59.99738 * 5 3 2 30 30 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47050 * 300.00004 * 5 3 2 32 32 H 1.07998 * 119.91553 * 359.97438 * 7 6 3 33 33 H 1.08000 * 120.08884 * 180.27684 * 8 7 6 34 34 H 1.09005 * 109.46665 * 300.00289 * 12 10 9 35 35 H 1.08998 * 109.47427 * 59.99875 * 12 10 9 36 36 H 1.08996 * 109.46964 * 299.99525 * 13 12 10 37 37 H 1.09001 * 109.46828 * 60.00029 * 13 12 10 38 38 H 0.97008 * 120.00383 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.08144 * 179.97438 * 22 9 8 40 40 H 1.07999 * 119.91029 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5420 1.4443 -0.1239 7 6 4.3129 0.8197 0.8411 8 6 5.6875 0.8128 0.7324 9 6 6.3027 1.4480 -0.3511 10 6 7.7694 1.4501 -0.4718 11 8 8.2996 2.0022 -1.4123 12 6 8.6125 0.7662 0.5734 13 6 10.0920 0.9158 0.2132 14 6 10.9350 0.2324 1.2589 15 1 10.4628 -0.2591 2.0967 16 6 12.3091 0.2345 1.1458 17 7 13.0448 -0.3623 2.0581 18 14 13.1259 1.0850 -0.3029 19 1 13.4007 2.5021 0.0458 20 1 14.4024 0.3981 -0.6249 21 1 12.2238 1.0312 -1.4812 22 6 5.5168 2.0814 -1.3192 23 6 4.1433 2.0758 -1.1986 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.0699 1.5875 2.1492 30 1 1.9982 3.1543 1.3072 31 1 0.5490 2.1253 1.3969 32 1 3.8365 0.3335 1.6796 33 1 6.2876 0.3212 1.4838 34 1 8.4275 1.2234 1.5455 35 1 8.3532 -0.2917 0.6143 36 1 10.2772 0.4589 -0.7588 37 1 10.3509 1.9738 0.1728 38 1 14.0117 -0.3606 1.9788 39 1 5.9847 2.5744 -2.1585 40 1 3.5351 2.5648 -1.9451 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041251538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:50 Heat of formation + Delta-G solvation = -62.906475 kcal Electronic energy + Delta-G solvation = -18447.298918 eV Core-core repulsion = 15611.060850 eV Total energy + Delta-G solvation = -2836.238068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15716 -39.75365 -36.86037 -35.61577 -33.54504 -32.24729 -31.89718 -29.92501 -28.22259 -25.98059 -24.23427 -23.60450 -22.71321 -20.88709 -20.39129 -19.12734 -17.88891 -16.74452 -16.45513 -16.39498 -16.24150 -15.70370 -15.33526 -15.04823 -14.72202 -14.66534 -14.41461 -14.32051 -13.75937 -13.62678 -13.36208 -12.98867 -12.89750 -12.83720 -12.51533 -12.18264 -12.10001 -11.98470 -11.78761 -11.67133 -11.56086 -11.42744 -11.33164 -10.80281 -10.56197 -9.94088 -9.69270 -8.33442 -6.36567 -0.31446 0.43902 1.31079 1.32925 1.44851 1.47449 2.32854 2.82644 3.01824 3.09153 3.65794 3.80835 4.01236 4.09618 4.19705 4.24008 4.36624 4.45929 4.46329 4.48647 4.57297 4.64658 4.73621 4.79532 4.92508 4.99760 5.06279 5.11938 5.15531 5.20191 5.26475 5.29808 5.38157 5.40177 5.41757 5.47979 5.57019 5.59030 5.67510 5.96057 6.21653 6.56688 6.72124 7.28746 8.82289 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.042468 B = 0.003439 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.155351 B = 8138.834547 C = 8534.873902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.053 4.053 4 H 0.087 0.913 5 C -0.146 4.146 6 C -0.044 4.044 7 C -0.128 4.128 8 C -0.069 4.069 9 C -0.191 4.191 10 C 0.395 3.605 11 O -0.498 6.498 12 C -0.144 4.144 13 C -0.002 4.002 14 C -0.530 4.530 15 H 0.050 0.950 16 C 0.013 3.987 17 N -0.943 5.943 18 Si 0.938 3.062 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.074 4.074 23 C -0.134 4.134 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.268 0.732 39 H 0.122 0.878 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.522 3.324 -3.643 28.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.071 4.071 4 H 0.106 0.894 5 C -0.203 4.203 6 C -0.044 4.044 7 C -0.146 4.146 8 C -0.087 4.087 9 C -0.192 4.192 10 C 0.276 3.724 11 O -0.377 6.377 12 C -0.181 4.181 13 C -0.040 4.040 14 C -0.568 4.568 15 H 0.068 0.932 16 C -0.185 4.185 17 N -0.584 5.584 18 Si 0.763 3.237 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.092 4.092 23 C -0.151 4.151 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.168 0.832 33 H 0.162 0.838 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.077 0.923 39 H 0.140 0.860 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -28.071 3.567 -4.076 28.589 hybrid contribution 1.213 0.209 -0.451 1.311 sum -26.858 3.776 -4.527 27.497 Atomic orbital electron populations 1.21821 0.94663 1.02057 1.02401 1.21585 0.96660 0.94843 1.02282 1.20303 0.88826 0.97722 1.00234 0.89431 1.21909 1.02288 1.00157 0.95909 1.20464 0.96863 0.93929 0.93130 1.21236 0.92604 1.00593 1.00150 1.21706 0.95835 0.95375 0.95792 1.20534 0.93659 1.05482 0.99476 1.23135 0.89620 0.75135 0.84511 1.90447 1.76530 1.37955 1.32752 1.21885 0.94812 1.02457 0.98984 1.19303 0.93056 0.95898 0.95701 1.21427 0.91732 1.34655 1.08939 0.93160 1.25829 0.98289 0.95725 0.98657 1.70024 1.06072 1.45636 1.36647 0.85828 0.78087 0.79182 0.80638 1.19279 1.20216 1.18583 1.21485 0.94504 0.95931 0.97323 1.21252 0.93490 1.01104 0.99297 0.92488 0.91704 0.92479 0.92565 0.91414 0.92116 0.93021 0.90651 0.83174 0.83803 0.87557 0.87579 0.97218 0.97338 0.92334 0.86001 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 71.99 0.70 -0.63 16 2 C -0.12 -1.29 5.14 30.60 0.16 -1.13 16 3 C -0.05 -0.63 2.56 -11.54 -0.03 -0.66 16 4 H 0.09 0.92 7.86 -2.39 -0.02 0.90 16 5 C -0.15 -1.53 8.76 71.98 0.63 -0.90 16 6 C -0.04 -0.76 4.79 -19.79 -0.09 -0.86 16 7 C -0.13 -2.38 8.73 22.23 0.19 -2.18 16 8 C -0.07 -1.63 9.47 22.58 0.21 -1.42 16 9 C -0.19 -5.62 5.87 -20.15 -0.12 -5.74 16 10 C 0.39 14.76 7.12 28.03 0.20 14.96 16 11 O -0.50 -22.01 15.98 -2.97 -0.05 -22.05 16 12 C -0.14 -5.68 4.25 29.85 0.13 -5.55 16 13 C 0.00 -0.11 3.33 29.85 0.10 -0.01 16 14 C -0.53 -31.04 9.66 25.60 0.25 -30.80 16 15 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 16 C 0.01 0.76 5.47 84.65 0.46 1.22 16 17 N -0.94 -59.60 13.96 21.45 0.30 -59.30 16 18 Si 0.94 47.15 27.47 68.60 1.88 49.03 16 19 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 21 H -0.26 -13.03 6.54 99.48 0.65 -12.38 16 22 C -0.07 -1.96 9.60 22.58 0.22 -1.74 16 23 C -0.13 -2.66 9.65 22.22 0.21 -2.44 16 24 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.06 0.48 6.56 -2.39 -0.02 0.46 16 26 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.74 7.57 -2.39 -0.02 0.72 16 29 H 0.06 0.63 7.36 -2.39 -0.02 0.61 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.59 6.56 -2.39 -0.02 0.58 16 32 H 0.15 2.03 7.13 -2.91 -0.02 2.01 16 33 H 0.14 3.09 7.05 -2.91 -0.02 3.07 16 34 H 0.11 3.83 8.09 -2.38 -0.02 3.81 16 35 H 0.11 3.83 8.09 -2.39 -0.02 3.81 16 36 H 0.01 0.50 7.16 -2.39 -0.02 0.48 16 37 H 0.01 0.43 7.53 -2.39 -0.02 0.41 16 38 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 39 H 0.12 3.36 7.65 -2.91 -0.02 3.34 16 40 H 0.15 2.16 7.94 -2.91 -0.02 2.13 16 Total: -1.00 -71.12 327.64 6.30 -64.82 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 0.95 Total: 5.37 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 3.22 Total: -37.87 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.30 Total: -59.30 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.88 Total: 49.03 kcal Total: -71.12 6.30 -64.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041251538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.910 kcal (2) G-P(sol) polarization free energy of solvation -71.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds