Wall clock time and date at job start Mon Mar 30 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99916 * 3 2 1 6 6 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 7 7 C 1.38411 * 119.82208 * 59.72702 * 6 3 2 8 8 C 1.37888 * 120.16821 * 179.76371 * 7 6 3 9 9 C 1.39849 * 119.82418 * 0.48615 * 8 7 6 10 10 C 1.47173 * 120.17184 * 179.74717 * 9 8 7 11 11 O 1.21253 * 119.99754 * 180.02562 * 10 9 8 12 12 C 1.50693 * 119.99809 * 0.02562 * 10 9 8 13 13 C 1.53006 * 109.47245 * 180.02562 * 12 10 9 14 14 C 1.50693 * 109.47245 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00069 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00184 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00298 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99796 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47244 * 89.99415 * 18 16 14 20 20 H 1.48490 * 109.47467 * 209.99579 * 18 16 14 21 21 H 1.48500 * 109.47065 * 329.99829 * 18 16 14 22 22 C 1.39853 * 119.65915 * 359.76571 * 9 8 7 23 23 C 1.37882 * 119.82438 * 0.02562 * 22 9 8 24 24 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 26 26 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 27 27 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 28 28 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 29 29 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 30 30 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 31 31 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 32 32 H 1.07995 * 119.91849 * 359.97438 * 7 6 3 33 33 H 1.07994 * 120.08730 * 180.22936 * 8 7 6 34 34 H 1.08997 * 109.47638 * 300.00330 * 12 10 9 35 35 H 1.09000 * 109.47321 * 60.00536 * 12 10 9 36 36 H 1.08997 * 109.46991 * 300.00627 * 13 12 10 37 37 H 1.09009 * 109.46718 * 60.00206 * 13 12 10 38 38 H 0.97000 * 119.99893 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.08897 * 179.97438 * 22 9 8 40 40 H 1.08005 * 119.91580 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 6 4.3124 0.8098 -0.8350 8 6 5.6874 0.8111 -0.7313 9 6 6.3026 1.4470 0.3518 10 6 7.7693 1.4484 0.4730 11 8 8.2993 2.0003 1.4136 12 6 8.6123 0.7639 -0.5718 13 6 10.0917 0.9114 -0.2105 14 6 10.9347 0.2274 -1.2556 15 1 10.4626 -0.2631 -2.0940 16 6 12.3088 0.2288 -1.1422 17 7 13.0445 -0.3686 -2.0540 18 14 13.1255 1.0779 0.3075 19 1 13.2825 0.1107 1.4234 20 1 14.4607 1.5820 -0.1021 21 1 12.2822 2.2158 0.7538 22 6 5.5168 2.0813 1.3193 23 6 4.1432 2.0749 1.1991 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8901 29 1 2.0700 1.5874 -2.1492 30 1 0.5490 2.1252 -1.3970 31 1 1.9982 3.1542 -1.3072 32 1 3.8357 0.3153 -1.6684 33 1 6.2875 0.3189 -1.4822 34 1 8.3524 -0.2939 -0.6126 35 1 8.4281 1.2210 -1.5440 36 1 10.3519 1.9691 -0.1694 37 1 10.2756 0.4540 0.7617 38 1 14.0112 -0.3679 -1.9739 39 1 5.9845 2.5742 2.1587 40 1 3.5350 2.5647 1.9452 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041251540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:53 Heat of formation + Delta-G solvation = -45.672690 kcal Electronic energy + Delta-G solvation = -18446.677660 eV Core-core repulsion = 15611.186905 eV Total energy + Delta-G solvation = -2835.490755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.04271 -38.55054 -36.09924 -33.55515 -31.86656 -31.16618 -30.82849 -29.16243 -26.57406 -25.06904 -23.13448 -22.67033 -21.15933 -20.00461 -19.08823 -17.21840 -16.52503 -15.68062 -15.54633 -14.83325 -14.81658 -14.53678 -14.13058 -13.95809 -13.73437 -13.49738 -13.15262 -12.87933 -12.62900 -12.50710 -12.30208 -12.07522 -11.94705 -11.45351 -11.26483 -11.04866 -10.96830 -10.94355 -10.70212 -10.21149 -10.06823 -9.78480 -9.20697 -9.03388 -9.01399 -8.73555 -8.51192 -6.03188 -4.01825 0.77426 1.36122 2.70203 3.36840 3.43523 3.53403 3.83853 4.31791 4.43153 4.50142 4.51133 4.72914 4.86352 4.93673 5.06886 5.11193 5.20452 5.29441 5.32026 5.34648 5.42887 5.59300 5.66034 5.67836 5.70535 5.74199 5.88554 5.97036 5.98100 6.03244 6.11067 6.12371 6.31673 6.46620 6.48376 6.78463 6.87873 7.32135 7.41027 7.76635 8.01459 8.52492 8.99891 9.59898 11.09725 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.042466 B = 0.003440 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.187140 B = 8138.578797 C = 8534.692639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.055 4.055 4 H 0.077 0.923 5 C -0.146 4.146 6 C -0.055 4.055 7 C -0.130 4.130 8 C -0.068 4.068 9 C -0.165 4.165 10 C 0.388 3.612 11 O -0.456 6.456 12 C -0.148 4.148 13 C -0.005 4.005 14 C -0.524 4.524 15 H 0.073 0.927 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.262 1.262 22 C -0.064 4.064 23 C -0.134 4.134 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.022 0.978 37 H 0.017 0.983 38 H 0.263 0.737 39 H 0.131 0.869 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.904 3.004 3.354 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.073 4.073 4 H 0.096 0.904 5 C -0.203 4.203 6 C -0.056 4.056 7 C -0.148 4.148 8 C -0.086 4.086 9 C -0.166 4.166 10 C 0.266 3.734 11 O -0.331 6.331 12 C -0.185 4.185 13 C -0.042 4.042 14 C -0.562 4.562 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.542 5.542 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.083 4.083 23 C -0.152 4.152 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.149 0.851 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -25.433 3.258 3.797 25.921 hybrid contribution 0.538 0.327 0.635 0.894 sum -24.895 3.585 4.432 25.539 Atomic orbital electron populations 1.21832 0.95703 1.01692 1.01887 1.21596 0.95762 0.95527 1.02576 1.20242 0.90846 0.96991 0.99269 0.90416 1.21902 1.01259 1.00640 0.96512 1.20081 0.95299 0.95928 0.94250 1.20943 0.93448 1.00916 0.99462 1.21565 0.94715 0.95848 0.96466 1.20846 0.96020 1.02459 0.97269 1.23079 0.87855 0.76567 0.85909 1.90464 1.75484 1.35865 1.31324 1.21973 0.97922 1.00943 0.97707 1.19424 0.89970 0.97652 0.97203 1.21113 0.91137 1.35007 1.08919 0.90889 1.24987 0.97417 0.94855 0.96040 1.69911 1.05529 1.44014 1.34787 0.86800 0.78705 0.80959 0.83115 1.20229 1.21402 1.18622 1.21432 0.93339 0.95755 0.97740 1.20990 0.94470 1.01337 0.98398 0.92706 0.92792 0.92413 0.91560 0.91757 0.92243 0.92116 0.92503 0.85676 0.84556 0.89057 0.89026 0.95989 0.96436 0.92719 0.85140 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 37.15 0.36 -0.54 16 2 C -0.12 -0.83 5.14 -26.74 -0.14 -0.97 16 3 C -0.06 -0.42 2.56 -91.77 -0.23 -0.66 16 4 H 0.08 0.55 7.86 -51.93 -0.41 0.15 16 5 C -0.15 -1.02 8.76 37.16 0.33 -0.69 16 6 C -0.06 -0.56 4.79 -104.50 -0.50 -1.06 16 7 C -0.13 -1.38 8.73 -39.65 -0.35 -1.73 16 8 C -0.07 -0.86 9.47 -39.11 -0.37 -1.23 16 9 C -0.16 -2.48 5.87 -105.06 -0.62 -3.09 16 10 C 0.39 7.19 7.12 -30.69 -0.22 6.97 16 11 O -0.46 -9.84 15.98 5.58 0.09 -9.75 16 12 C -0.15 -2.91 4.25 -27.88 -0.12 -3.03 16 13 C -0.01 -0.13 3.33 -27.88 -0.09 -0.22 16 14 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 18 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 22 C -0.06 -0.88 9.60 -39.11 -0.38 -1.25 16 23 C -0.13 -1.48 9.65 -39.65 -0.38 -1.86 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.31 6.57 -51.92 -0.34 -0.03 16 27 H 0.07 0.47 7.54 -51.93 -0.39 0.08 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.06 0.41 7.39 -51.93 -0.38 0.03 16 30 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.13 1.07 7.13 -52.49 -0.37 0.70 16 33 H 0.14 1.58 7.05 -52.49 -0.37 1.21 16 34 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 35 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 36 H 0.02 0.57 7.16 -51.93 -0.37 0.20 16 37 H 0.02 0.45 7.53 -51.92 -0.39 0.06 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.13 1.78 7.65 -52.49 -0.40 1.38 16 40 H 0.12 1.08 7.94 -52.48 -0.42 0.66 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -32.71 327.64 -8.32 -41.03 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -6.31 Total: -3.98 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -3.14 Total: -22.84 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.77 Total: -27.37 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.71 -8.32 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041251540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.645 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds