Wall clock time and date at job start Mon Mar 30 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47000 * 240.00414 * 2 1 3 5 5 H 1.08000 * 119.99219 * 240.00434 * 4 2 1 6 6 C 1.37872 * 120.00213 * 59.99861 * 4 2 1 7 7 N 1.31515 * 120.00075 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00082 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47245 * 59.99643 * 8 6 4 10 10 H 1.48500 * 109.47399 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47131 * 300.00045 * 8 6 4 12 12 O 1.42896 * 109.46978 * 119.99860 * 2 1 3 13 13 C 1.35898 * 116.99921 * 178.33804 * 12 2 1 14 14 C 1.38764 * 120.17334 * 355.82127 * 13 12 2 15 15 C 1.37835 * 119.71186 * 180.09739 * 14 13 12 16 16 C 1.38955 * 120.62652 * 359.97438 * 15 14 13 17 17 C 1.37708 * 119.76718 * 359.76762 * 16 15 14 18 18 C 1.38426 * 120.17232 * 175.79269 * 13 12 2 19 19 C 1.50639 * 122.55850 * 180.73655 * 17 16 15 20 20 C 1.52730 * 110.59839 * 341.99336 * 19 17 16 21 21 C 1.53329 * 108.38677 * 51.14203 * 20 19 17 22 22 C 1.50651 * 117.70448 * 179.43689 * 16 15 14 23 23 H 1.08997 * 109.47046 * 303.93167 * 1 2 3 24 24 H 1.09005 * 109.46720 * 63.92838 * 1 2 3 25 25 H 1.08997 * 109.47513 * 183.92578 * 1 2 3 26 26 H 1.08995 * 109.46944 * 173.16624 * 3 2 1 27 27 H 1.08996 * 109.47533 * 293.17064 * 3 2 1 28 28 H 1.09003 * 109.46917 * 53.16565 * 3 2 1 29 29 H 0.97002 * 120.00170 * 179.97438 * 7 6 4 30 30 H 1.07995 * 120.14340 * 0.12410 * 14 13 12 31 31 H 1.08003 * 119.68583 * 179.97438 * 15 14 13 32 32 H 1.07997 * 119.75159 * 0.06089 * 18 13 12 33 33 H 1.08993 * 109.25507 * 102.28422 * 19 17 16 34 34 H 1.09002 * 109.25555 * 221.70971 * 19 17 16 35 35 H 1.08995 * 109.68481 * 170.86474 * 20 19 17 36 36 H 1.08992 * 109.68357 * 291.42357 * 20 19 17 37 37 H 1.09001 * 109.67982 * 49.89197 * 21 20 19 38 38 H 1.09004 * 109.67615 * 170.43603 * 21 20 19 39 39 H 1.08998 * 109.25341 * 282.58676 * 22 16 15 40 40 H 1.09002 * 109.25051 * 42.01217 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8270 -0.4197 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 8 2.0064 -0.6736 1.1668 13 6 3.3531 -0.7931 1.3036 14 6 4.1985 -0.3512 0.2958 15 6 5.5629 -0.4789 0.4437 16 6 6.1005 -1.0457 1.5929 17 6 5.2637 -1.4801 2.5966 18 6 3.8889 -1.3558 2.4492 19 6 5.7788 -2.0886 3.8748 20 6 7.2254 -2.5484 3.7062 21 6 8.0383 -1.3850 3.1260 22 6 7.5997 -1.1648 1.6797 23 1 -0.3633 0.5736 0.8526 24 1 -0.3633 0.4517 -0.9232 25 1 -0.3634 -1.0252 0.0704 26 1 3.1231 1.4449 0.1223 27 1 1.7800 1.9199 -0.9447 28 1 1.5803 1.9904 0.8225 29 1 0.7087 1.1614 -3.4844 30 1 3.7892 0.0913 -0.6003 31 1 6.2205 -0.1352 -0.3412 32 1 3.2324 -1.7008 3.2343 33 1 5.7280 -1.3470 4.6719 34 1 5.1585 -2.9445 4.1410 35 1 7.6348 -2.8351 4.6749 36 1 7.2635 -3.3984 3.0250 37 1 7.8529 -0.4818 3.7074 38 1 9.1003 -1.6290 3.1546 39 1 7.9292 -2.0075 1.0720 40 1 8.0554 -0.2498 1.3014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041251605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:31 Heat of formation + Delta-G solvation = -30.695915 kcal Electronic energy + Delta-G solvation = -20011.975422 eV Core-core repulsion = 17177.134108 eV Total energy + Delta-G solvation = -2834.841313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80986 -38.13094 -34.97764 -33.66781 -32.01222 -30.45518 -29.23913 -27.79377 -25.91466 -25.42835 -23.07823 -22.31106 -21.50314 -20.20134 -18.61285 -17.23388 -15.58444 -15.44940 -15.34324 -14.76558 -14.16169 -13.81444 -13.73038 -13.65907 -12.94070 -12.83587 -12.63535 -12.41132 -12.04733 -11.71602 -11.61660 -11.25751 -11.07863 -11.00234 -10.78067 -10.70942 -10.64648 -10.46299 -10.38676 -10.23254 -10.18872 -9.58565 -9.52530 -8.85029 -8.49964 -7.99807 -7.02350 -6.20117 -4.29601 2.09424 2.22962 3.21742 3.26392 3.30607 4.24587 4.49863 4.53024 4.95375 4.98126 5.01155 5.07317 5.44509 5.49173 5.67486 5.73715 5.76933 5.79067 6.00304 6.03139 6.10369 6.16403 6.22920 6.40883 6.42331 6.48653 6.59191 6.63441 6.77675 6.81823 6.91065 7.06800 7.17996 7.28210 7.37411 7.41562 7.53027 7.65302 7.77093 7.98759 8.06435 8.49335 8.92039 9.35775 10.79823 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.026423 B = 0.006111 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.420446 B = 4580.599274 C = 5183.698484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.228 3.772 3 C -0.179 4.179 4 C -0.536 4.536 5 H 0.067 0.933 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.897 3.103 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.326 6.326 13 C 0.163 3.837 14 C -0.189 4.189 15 C -0.100 4.100 16 C -0.138 4.138 17 C -0.055 4.055 18 C -0.183 4.183 19 C -0.075 4.075 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.069 4.069 23 H 0.020 0.980 24 H 0.103 0.897 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.099 0.901 28 H 0.019 0.981 29 H 0.266 0.734 30 H 0.175 0.825 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.574 -2.423 7.993 12.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.192 3.808 3 C -0.236 4.236 4 C -0.573 4.573 5 H 0.085 0.915 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.240 6.240 13 C 0.116 3.884 14 C -0.206 4.206 15 C -0.119 4.119 16 C -0.138 4.138 17 C -0.055 4.055 18 C -0.201 4.201 19 C -0.112 4.112 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.106 4.106 23 H 0.039 0.961 24 H 0.121 0.879 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.117 0.883 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.191 0.809 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.297 -2.356 7.950 12.457 hybrid contribution 0.251 -0.357 -1.117 1.199 sum 9.548 -2.713 6.833 12.051 Atomic orbital electron populations 1.21757 0.94744 0.99837 1.01878 1.19610 0.92014 0.88654 0.80535 1.22636 0.99844 0.98500 1.02637 1.21573 1.32311 1.12964 0.90468 0.91451 1.24834 0.94667 0.94929 0.98980 1.69760 1.35791 1.22394 1.24058 0.86547 0.79439 0.79913 0.81661 1.20037 1.21031 1.19924 1.85965 1.17540 1.73596 1.46948 1.18818 0.84158 0.92657 0.92788 1.22519 0.93052 1.03447 1.01614 1.20978 0.95089 0.99266 0.96529 1.19270 0.94435 1.04667 0.95447 1.19079 0.92036 0.99190 0.95237 1.20288 0.94161 1.07765 0.97935 1.20378 0.95889 0.99842 0.95050 1.21519 0.95151 0.98255 1.00544 1.21524 0.98769 0.98730 0.96481 1.20294 0.92461 1.01329 0.96514 0.96134 0.87913 0.94531 0.93427 0.88251 0.96150 0.92364 0.80855 0.87160 0.86701 0.91240 0.91288 0.92065 0.91801 0.91878 0.92172 0.91755 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 8.67 37.16 0.32 -2.67 16 2 C 0.23 5.66 0.84 -91.77 -0.08 5.59 16 3 C -0.18 -4.25 8.05 37.16 0.30 -3.96 16 4 C -0.54 -13.96 5.43 -34.44 -0.19 -14.15 16 5 H 0.07 1.82 6.83 -52.49 -0.36 1.47 16 6 C 0.07 1.76 5.12 -17.82 -0.09 1.66 16 7 N -0.88 -22.87 9.30 55.43 0.52 -22.35 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 O -0.33 -7.99 9.78 -19.42 -0.19 -8.18 16 13 C 0.16 3.65 5.99 -39.32 -0.24 3.42 16 14 C -0.19 -4.12 6.29 -39.53 -0.25 -4.37 16 15 C -0.10 -1.90 9.60 -39.46 -0.38 -2.28 16 16 C -0.14 -2.35 5.74 -104.57 -0.60 -2.95 16 17 C -0.06 -0.95 5.74 -104.62 -0.60 -1.55 16 18 C -0.18 -3.57 9.55 -39.29 -0.38 -3.94 16 19 C -0.07 -0.99 5.67 -28.05 -0.16 -1.15 16 20 C -0.12 -1.32 5.98 -26.70 -0.16 -1.48 16 21 C -0.12 -1.33 5.98 -26.70 -0.16 -1.49 16 22 C -0.07 -0.92 5.67 -28.05 -0.16 -1.08 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.10 2.59 5.97 -51.93 -0.31 2.28 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 1.09 4.95 -51.93 -0.26 0.84 16 27 H 0.10 2.50 5.92 -51.93 -0.31 2.19 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.17 4.15 3.84 -52.49 -0.20 3.95 16 31 H 0.11 1.87 8.05 -52.48 -0.42 1.44 16 32 H 0.11 2.08 8.05 -52.49 -0.42 1.66 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 LS Contribution 305.61 15.07 4.61 4.61 Total: -1.00 -26.55 305.61 -8.96 -35.51 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.06 Total: 5.48 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -2.81 Total: -30.40 kcal Atomic # 7 Polarization: -22.87 SS G_CDS: 0.52 Total: -22.35 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.19 Total: -8.18 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.55 -8.96 -35.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041251605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.812 kcal (2) G-P(sol) polarization free energy of solvation -26.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds