Wall clock time and date at job start Mon Mar 30 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47000 * 240.00414 * 2 1 3 5 5 H 1.08000 * 119.99219 * 240.00434 * 4 2 1 6 6 C 1.37872 * 120.00213 * 59.99861 * 4 2 1 7 7 N 1.31515 * 120.00075 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00082 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47245 * 59.99643 * 8 6 4 10 10 H 1.48500 * 109.47399 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47131 * 300.00045 * 8 6 4 12 12 O 1.42896 * 109.46978 * 119.99860 * 2 1 3 13 13 C 1.35898 * 116.99921 * 178.33804 * 12 2 1 14 14 C 1.38764 * 120.17334 * 355.82127 * 13 12 2 15 15 C 1.37835 * 119.71186 * 180.09739 * 14 13 12 16 16 C 1.38955 * 120.62652 * 359.97438 * 15 14 13 17 17 C 1.37708 * 119.76718 * 359.76762 * 16 15 14 18 18 C 1.38426 * 120.17232 * 175.79269 * 13 12 2 19 19 C 1.50639 * 122.55850 * 180.73655 * 17 16 15 20 20 C 1.52730 * 110.59839 * 341.99336 * 19 17 16 21 21 C 1.53329 * 108.38677 * 51.14203 * 20 19 17 22 22 C 1.50651 * 117.70448 * 179.43689 * 16 15 14 23 23 H 1.08997 * 109.47046 * 303.93167 * 1 2 3 24 24 H 1.09005 * 109.46720 * 63.92838 * 1 2 3 25 25 H 1.08997 * 109.47513 * 183.92578 * 1 2 3 26 26 H 1.08995 * 109.46944 * 173.16624 * 3 2 1 27 27 H 1.08996 * 109.47533 * 293.17064 * 3 2 1 28 28 H 1.09003 * 109.46917 * 53.16565 * 3 2 1 29 29 H 0.97002 * 120.00170 * 179.97438 * 7 6 4 30 30 H 1.07995 * 120.14340 * 0.12410 * 14 13 12 31 31 H 1.08003 * 119.68583 * 179.97438 * 15 14 13 32 32 H 1.07997 * 119.75159 * 0.06089 * 18 13 12 33 33 H 1.08993 * 109.25507 * 102.28422 * 19 17 16 34 34 H 1.09002 * 109.25555 * 221.70971 * 19 17 16 35 35 H 1.08995 * 109.68481 * 170.86474 * 20 19 17 36 36 H 1.08992 * 109.68357 * 291.42357 * 20 19 17 37 37 H 1.09001 * 109.67982 * 49.89197 * 21 20 19 38 38 H 1.09004 * 109.67615 * 170.43603 * 21 20 19 39 39 H 1.08998 * 109.25341 * 282.58676 * 22 16 15 40 40 H 1.09002 * 109.25051 * 42.01217 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8270 -0.4197 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 8 2.0064 -0.6736 1.1668 13 6 3.3531 -0.7931 1.3036 14 6 4.1985 -0.3512 0.2958 15 6 5.5629 -0.4789 0.4437 16 6 6.1005 -1.0457 1.5929 17 6 5.2637 -1.4801 2.5966 18 6 3.8889 -1.3558 2.4492 19 6 5.7788 -2.0886 3.8748 20 6 7.2254 -2.5484 3.7062 21 6 8.0383 -1.3850 3.1260 22 6 7.5997 -1.1648 1.6797 23 1 -0.3633 0.5736 0.8526 24 1 -0.3633 0.4517 -0.9232 25 1 -0.3634 -1.0252 0.0704 26 1 3.1231 1.4449 0.1223 27 1 1.7800 1.9199 -0.9447 28 1 1.5803 1.9904 0.8225 29 1 0.7087 1.1614 -3.4844 30 1 3.7892 0.0913 -0.6003 31 1 6.2205 -0.1352 -0.3412 32 1 3.2324 -1.7008 3.2343 33 1 5.7280 -1.3470 4.6719 34 1 5.1585 -2.9445 4.1410 35 1 7.6348 -2.8351 4.6749 36 1 7.2635 -3.3984 3.0250 37 1 7.8529 -0.4818 3.7074 38 1 9.1003 -1.6290 3.1546 39 1 7.9292 -2.0075 1.0720 40 1 8.0554 -0.2498 1.3014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041251605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:30 Heat of formation + Delta-G solvation = -42.350572 kcal Electronic energy + Delta-G solvation = -20012.480806 eV Core-core repulsion = 17177.134108 eV Total energy + Delta-G solvation = -2835.346697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.34982 -39.63256 -36.37650 -35.45104 -33.34665 -32.29567 -30.61851 -29.14326 -27.77536 -27.41358 -24.26444 -23.68538 -22.94113 -21.79713 -20.03239 -18.99739 -17.39038 -17.02981 -16.72631 -16.30423 -15.66205 -15.49422 -15.15285 -14.64208 -14.53239 -14.36168 -14.10684 -13.81480 -13.44138 -13.33226 -13.20385 -12.92379 -12.85322 -12.64740 -12.53885 -12.44890 -12.19748 -11.99441 -11.75473 -11.66506 -11.38842 -11.19114 -11.04603 -10.71449 -10.46098 -9.48801 -8.62398 -8.15821 -6.30934 0.57884 0.72573 1.39066 1.40450 1.47908 2.35690 2.83268 2.98056 3.06923 3.89452 3.94765 4.12834 4.14250 4.35627 4.41496 4.56525 4.64066 4.65453 4.71068 4.74456 4.75980 4.83244 4.90273 4.99795 5.07789 5.11194 5.15982 5.20373 5.26325 5.29618 5.33791 5.39739 5.50203 5.53608 5.68581 5.74458 5.84227 5.89015 6.00723 6.12195 6.23137 6.55681 7.04423 7.36829 8.82421 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.026423 B = 0.006111 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.420446 B = 4580.599274 C = 5183.698484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.222 3.778 3 C -0.167 4.167 4 C -0.543 4.543 5 H 0.049 0.951 6 C 0.034 3.966 7 N -0.897 5.897 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.273 1.273 12 O -0.345 6.345 13 C 0.126 3.874 14 C -0.210 4.210 15 C -0.108 4.108 16 C -0.132 4.132 17 C -0.053 4.053 18 C -0.189 4.189 19 C -0.076 4.076 20 C -0.115 4.115 21 C -0.115 4.115 22 C -0.071 4.071 23 H 0.034 0.966 24 H 0.089 0.911 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.026 0.974 29 H 0.268 0.732 30 H 0.148 0.852 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.991 -3.216 9.176 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.186 3.814 3 C -0.224 4.224 4 C -0.580 4.580 5 H 0.067 0.933 6 C -0.167 4.167 7 N -0.535 5.535 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.198 1.198 12 O -0.260 6.260 13 C 0.080 3.920 14 C -0.228 4.228 15 C -0.126 4.126 16 C -0.132 4.132 17 C -0.053 4.053 18 C -0.207 4.207 19 C -0.113 4.113 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.108 4.108 23 H 0.053 0.947 24 H 0.108 0.892 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.165 0.835 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.722 -3.146 9.140 15.194 hybrid contribution -0.407 -0.131 -1.402 1.466 sum 11.316 -3.277 7.738 14.095 Atomic orbital electron populations 1.21659 0.94587 0.99648 1.01774 1.19593 0.92280 0.88964 0.80586 1.22475 0.99975 0.98089 1.01863 1.21552 1.32373 1.12585 0.91524 0.93310 1.25389 0.94875 0.95557 1.00918 1.69839 1.36143 1.22945 1.24555 0.85737 0.78892 0.78734 0.79133 1.20360 1.20126 1.19808 1.85890 1.19139 1.74294 1.46670 1.19157 0.83365 0.95047 0.94420 1.22278 0.94461 1.05059 1.00971 1.21244 0.94117 0.99273 0.97935 1.19769 0.96896 1.02400 0.94168 1.19602 0.90984 0.97891 0.96844 1.20591 0.95668 1.07288 0.97203 1.20497 0.97481 1.00288 0.92994 1.21544 0.93582 0.98030 1.02053 1.21545 1.00298 0.98792 0.94595 1.20407 0.89372 1.02336 0.98662 0.94697 0.89206 0.94926 0.93322 0.89807 0.95508 0.92206 0.83483 0.85563 0.85794 0.89842 0.90458 0.89312 0.92111 0.91851 0.89546 0.90771 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.67 71.98 0.62 -5.24 16 2 C 0.22 11.40 0.84 -11.54 -0.01 11.39 16 3 C -0.17 -8.18 8.05 71.98 0.58 -7.60 16 4 C -0.54 -29.24 5.43 25.60 0.14 -29.10 16 5 H 0.05 2.75 6.83 -2.91 -0.02 2.73 16 6 C 0.03 1.75 5.12 84.65 0.43 2.18 16 7 N -0.90 -47.33 9.30 21.45 0.20 -47.13 16 8 Si 0.95 42.28 29.54 68.60 2.03 44.31 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 O -0.34 -17.44 9.78 -92.40 -0.90 -18.35 16 13 C 0.13 5.79 5.99 22.44 0.13 5.93 16 14 C -0.21 -9.42 6.29 22.30 0.14 -9.28 16 15 C -0.11 -4.03 9.60 22.35 0.21 -3.82 16 16 C -0.13 -4.25 5.74 -19.83 -0.11 -4.37 16 17 C -0.05 -1.72 5.74 -19.87 -0.11 -1.83 16 18 C -0.19 -7.33 9.55 22.46 0.21 -7.11 16 19 C -0.08 -1.75 5.67 29.74 0.17 -1.59 16 20 C -0.11 -2.09 5.98 30.61 0.18 -1.91 16 21 C -0.11 -2.09 5.98 30.61 0.18 -1.90 16 22 C -0.07 -1.65 5.67 29.74 0.17 -1.48 16 23 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.09 4.64 5.97 -2.38 -0.01 4.62 16 25 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 2.33 4.95 -2.39 -0.01 2.32 16 27 H 0.08 4.35 5.92 -2.39 -0.01 4.34 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 30 H 0.15 7.37 3.84 -2.91 -0.01 7.36 16 31 H 0.13 4.18 8.05 -2.91 -0.02 4.16 16 32 H 0.12 4.44 8.05 -2.91 -0.02 4.42 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 37 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 38 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.62 8.12 -2.39 -0.02 1.60 16 Total: -1.00 -58.18 305.61 5.29 -52.90 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 1.02 Total: 24.01 kcal Atomic # 6 Polarization: -58.68 SS G_CDS: 2.95 Total: -55.74 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.20 Total: -47.13 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.90 Total: -18.35 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -58.18 5.29 -52.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041251605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.546 kcal (2) G-P(sol) polarization free energy of solvation -58.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds