Wall clock time and date at job start Mon Mar 30 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47248 * 2 1 4 4 C 1.50698 * 109.47349 * 239.99560 * 2 1 3 5 5 H 1.07998 * 120.00257 * 239.99834 * 4 2 1 6 6 C 1.37875 * 119.99600 * 60.00193 * 4 2 1 7 7 N 1.31510 * 120.00397 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99701 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47201 * 89.99530 * 8 6 4 10 10 H 1.48505 * 109.47008 * 210.00099 * 8 6 4 11 11 H 1.48498 * 109.46947 * 329.99527 * 8 6 4 12 12 O 1.42905 * 109.46962 * 119.99622 * 2 1 3 13 13 C 1.35896 * 117.00134 * 63.62537 * 12 2 1 14 14 C 1.38482 * 119.78899 * 1.95125 * 13 12 2 15 15 C 1.38123 * 119.71556 * 180.02562 * 14 13 12 16 16 C 1.38004 * 119.83320 * 0.14250 * 15 14 13 17 17 C 1.38908 * 120.65822 * 359.97438 * 16 15 14 18 18 C 1.37611 * 119.72413 * 359.72856 * 17 16 15 19 19 C 1.50619 * 122.58616 * 180.80123 * 18 17 16 20 20 C 1.52728 * 110.59972 * 342.02012 * 19 18 17 21 21 C 1.53324 * 108.40649 * 51.07180 * 20 19 18 22 22 C 1.50640 * 117.73315 * 179.41363 * 17 16 15 23 23 H 1.09000 * 109.47592 * 306.23911 * 1 2 3 24 24 H 1.09003 * 109.47419 * 66.24006 * 1 2 3 25 25 H 1.09002 * 109.47239 * 186.23993 * 1 2 3 26 26 H 1.09000 * 109.47317 * 176.64269 * 3 2 1 27 27 H 1.09000 * 109.47057 * 296.64719 * 3 2 1 28 28 H 1.09007 * 109.47247 * 56.63718 * 3 2 1 29 29 H 0.96997 * 120.00093 * 180.02562 * 7 6 4 30 30 H 1.08002 * 120.14011 * 0.02562 * 14 13 12 31 31 H 1.07998 * 120.08862 * 179.86351 * 15 14 13 32 32 H 1.07997 * 119.67266 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.25201 * 102.30292 * 19 18 17 34 34 H 1.08995 * 109.25600 * 221.72765 * 19 18 17 35 35 H 1.08999 * 109.67457 * 291.34828 * 20 19 18 36 36 H 1.08997 * 109.68006 * 170.80266 * 20 19 18 37 37 H 1.09007 * 109.68299 * 170.48672 * 21 20 19 38 38 H 1.08995 * 109.68129 * 49.93776 * 21 20 19 39 39 H 1.09004 * 109.25411 * 282.49008 * 22 17 16 40 40 H 1.08993 * 109.25719 * 41.92317 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 1.3428 -2.1619 -4.4116 10 1 2.4867 -0.1416 -5.1122 11 1 3.6294 -1.7584 -3.7120 12 8 2.0062 -0.6736 1.1669 13 6 1.7048 -1.9935 1.2836 14 6 1.0016 -2.6305 0.2748 15 6 0.6955 -3.9719 0.3953 16 6 1.0893 -4.6677 1.5202 17 6 1.7927 -4.0325 2.5357 18 6 2.1053 -2.6976 2.4176 19 6 2.8802 -1.9497 3.4705 20 6 2.8597 -2.7104 4.7947 21 6 3.2877 -4.1583 4.5279 22 6 2.1780 -4.8515 3.7399 23 1 -0.3634 0.6075 0.8288 24 1 -0.3634 0.4141 -0.9406 25 1 -0.3634 -1.0216 0.1117 26 1 3.1283 1.4431 0.0602 27 1 1.7265 1.9387 -0.9185 28 1 1.6282 1.9735 0.8584 29 1 0.7082 1.1606 -3.4844 30 1 0.6938 -2.0806 -0.6023 31 1 0.1454 -4.4741 -0.3868 32 1 0.8482 -5.7164 1.6119 33 1 3.9123 -1.8306 3.1405 34 1 2.4338 -0.9658 3.6144 35 1 1.8522 -2.6962 5.2105 36 1 3.5532 -2.2459 5.4957 37 1 3.4437 -4.6755 5.4747 38 1 4.2104 -4.1674 3.9478 39 1 1.3064 -4.9783 4.3822 40 1 2.5275 -5.8304 3.4120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041251610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:33 Heat of formation + Delta-G solvation = -29.154455 kcal Electronic energy + Delta-G solvation = -20335.087995 eV Core-core repulsion = 17500.313525 eV Total energy + Delta-G solvation = -2834.774471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.89473 -37.82208 -35.18926 -33.84592 -31.46853 -30.28447 -29.52910 -27.83751 -25.75938 -25.39114 -23.23091 -22.25637 -21.51622 -19.79731 -18.65662 -17.24046 -15.76990 -15.51857 -14.96975 -14.69994 -14.34981 -13.83642 -13.70437 -13.52369 -12.99877 -12.81053 -12.52566 -12.12721 -11.90379 -11.69931 -11.55281 -11.26051 -11.00480 -10.99712 -10.71408 -10.67734 -10.63136 -10.54384 -10.40495 -10.18109 -10.13650 -9.60952 -9.45978 -8.86715 -8.50265 -7.85259 -7.03482 -6.20284 -4.29136 2.09483 2.27504 3.19604 3.27204 3.32476 4.24884 4.52124 4.54406 4.99981 5.04857 5.10658 5.12802 5.50750 5.60612 5.74509 5.81631 5.84116 5.87598 6.05450 6.07575 6.20822 6.29240 6.37174 6.41316 6.48766 6.55966 6.62473 6.67666 6.78870 6.87737 6.91047 7.10747 7.22867 7.28935 7.37805 7.41268 7.53821 7.66643 7.77168 7.99587 8.05732 8.49438 8.92382 9.35912 10.79740 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.006795 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.381089 B = 4119.704311 C = 4648.374200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.228 3.772 3 C -0.124 4.124 4 C -0.535 4.535 5 H 0.068 0.932 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 O -0.323 6.323 13 C 0.162 3.838 14 C -0.196 4.196 15 C -0.101 4.101 16 C -0.181 4.181 17 C -0.061 4.061 18 C -0.132 4.132 19 C -0.064 4.064 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.072 4.072 23 H 0.019 0.981 24 H 0.099 0.901 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.102 0.898 28 H 0.019 0.981 29 H 0.265 0.735 30 H 0.175 0.825 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 -6.844 9.232 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.192 3.808 3 C -0.182 4.182 4 C -0.572 4.572 5 H 0.086 0.914 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 O -0.236 6.236 13 C 0.115 3.885 14 C -0.214 4.214 15 C -0.119 4.119 16 C -0.199 4.199 17 C -0.062 4.062 18 C -0.132 4.132 19 C -0.101 4.101 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.109 4.109 23 H 0.038 0.962 24 H 0.117 0.883 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.120 0.880 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.192 0.808 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.938 -6.559 9.196 11.335 hybrid contribution 0.137 -0.533 -1.227 1.345 sum 1.075 -7.092 7.969 10.722 Atomic orbital electron populations 1.22628 0.98155 1.00289 1.02528 1.19600 0.90745 0.89858 0.80596 1.21750 0.99217 0.95433 1.01773 1.21618 1.32200 1.12947 0.90474 0.91360 1.24830 0.94727 0.94885 0.98984 1.69766 1.35940 1.22377 1.23939 0.86497 0.79596 0.79443 0.82103 1.20356 1.20953 1.19697 1.85947 1.72950 1.18361 1.46392 1.18892 0.92479 0.84589 0.92545 1.22523 1.01808 0.95582 1.01519 1.20883 0.99435 0.94556 0.97048 1.20784 1.04334 0.99170 0.95609 1.19126 0.98776 0.92503 0.95745 1.18830 1.05332 0.93149 0.95930 1.20139 0.99460 0.98240 0.92251 1.21542 1.01192 0.95440 0.97294 1.21532 0.98580 0.96070 0.99394 1.20365 0.98338 0.97669 0.94555 0.96169 0.88287 0.93448 0.94526 0.87970 0.96150 0.92433 0.80777 0.87104 0.87620 0.91567 0.90964 0.92032 0.92092 0.92170 0.91778 0.91339 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.23 8.06 37.15 0.30 -3.93 16 2 C 0.23 5.61 0.84 -91.78 -0.08 5.53 16 3 C -0.12 -2.95 8.66 37.16 0.32 -2.63 16 4 C -0.53 -13.90 5.41 -34.44 -0.19 -14.08 16 5 H 0.07 1.85 6.73 -52.49 -0.35 1.50 16 6 C 0.07 1.75 5.12 -17.82 -0.09 1.66 16 7 N -0.88 -22.85 9.31 55.43 0.52 -22.34 16 8 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 O -0.32 -7.70 8.81 -19.41 -0.17 -7.87 16 13 C 0.16 3.60 5.97 -39.07 -0.23 3.37 16 14 C -0.20 -4.31 6.26 -39.53 -0.25 -4.56 16 15 C -0.10 -1.92 10.04 -39.71 -0.40 -2.32 16 16 C -0.18 -3.12 9.60 -39.42 -0.38 -3.50 16 17 C -0.06 -1.06 5.74 -104.63 -0.60 -1.66 16 18 C -0.13 -2.54 5.75 -104.47 -0.60 -3.14 16 19 C -0.06 -1.07 5.28 -28.06 -0.15 -1.22 16 20 C -0.12 -1.54 5.98 -26.70 -0.16 -1.70 16 21 C -0.12 -1.45 5.98 -26.70 -0.16 -1.60 16 22 C -0.07 -0.96 5.67 -28.05 -0.16 -1.12 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.10 2.49 5.93 -51.93 -0.31 2.18 16 25 H 0.05 1.09 5.01 -51.93 -0.26 0.83 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.10 2.56 5.99 -51.93 -0.31 2.25 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.18 4.18 3.75 -52.49 -0.20 3.98 16 31 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.11 1.54 8.05 -52.49 -0.42 1.12 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.26 7.75 -51.93 -0.40 0.86 16 35 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.81 8.12 -51.93 -0.42 0.38 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -26.41 304.21 -8.94 -35.36 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.03 Total: 5.81 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: -2.82 Total: -30.91 kcal Atomic # 7 Polarization: -22.85 SS G_CDS: 0.52 Total: -22.34 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.17 Total: -7.87 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.41 -8.94 -35.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041251610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.203 kcal (2) G-P(sol) polarization free energy of solvation -26.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds