Wall clock time and date at job start Mon Mar 30 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47248 * 2 1 4 4 C 1.50698 * 109.47349 * 239.99560 * 2 1 3 5 5 H 1.07998 * 120.00257 * 239.99834 * 4 2 1 6 6 C 1.37875 * 119.99600 * 60.00193 * 4 2 1 7 7 N 1.31510 * 120.00397 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99701 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47201 * 89.99530 * 8 6 4 10 10 H 1.48505 * 109.47008 * 210.00099 * 8 6 4 11 11 H 1.48498 * 109.46947 * 329.99527 * 8 6 4 12 12 O 1.42905 * 109.46962 * 119.99622 * 2 1 3 13 13 C 1.35896 * 117.00134 * 63.62537 * 12 2 1 14 14 C 1.38482 * 119.78899 * 1.95125 * 13 12 2 15 15 C 1.38123 * 119.71556 * 180.02562 * 14 13 12 16 16 C 1.38004 * 119.83320 * 0.14250 * 15 14 13 17 17 C 1.38908 * 120.65822 * 359.97438 * 16 15 14 18 18 C 1.37611 * 119.72413 * 359.72856 * 17 16 15 19 19 C 1.50619 * 122.58616 * 180.80123 * 18 17 16 20 20 C 1.52728 * 110.59972 * 342.02012 * 19 18 17 21 21 C 1.53324 * 108.40649 * 51.07180 * 20 19 18 22 22 C 1.50640 * 117.73315 * 179.41363 * 17 16 15 23 23 H 1.09000 * 109.47592 * 306.23911 * 1 2 3 24 24 H 1.09003 * 109.47419 * 66.24006 * 1 2 3 25 25 H 1.09002 * 109.47239 * 186.23993 * 1 2 3 26 26 H 1.09000 * 109.47317 * 176.64269 * 3 2 1 27 27 H 1.09000 * 109.47057 * 296.64719 * 3 2 1 28 28 H 1.09007 * 109.47247 * 56.63718 * 3 2 1 29 29 H 0.96997 * 120.00093 * 180.02562 * 7 6 4 30 30 H 1.08002 * 120.14011 * 0.02562 * 14 13 12 31 31 H 1.07998 * 120.08862 * 179.86351 * 15 14 13 32 32 H 1.07997 * 119.67266 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.25201 * 102.30292 * 19 18 17 34 34 H 1.08995 * 109.25600 * 221.72765 * 19 18 17 35 35 H 1.08999 * 109.67457 * 291.34828 * 20 19 18 36 36 H 1.08997 * 109.68006 * 170.80266 * 20 19 18 37 37 H 1.09007 * 109.68299 * 170.48672 * 21 20 19 38 38 H 1.08995 * 109.68129 * 49.93776 * 21 20 19 39 39 H 1.09004 * 109.25411 * 282.49008 * 22 17 16 40 40 H 1.08993 * 109.25719 * 41.92317 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 1.3428 -2.1619 -4.4116 10 1 2.4867 -0.1416 -5.1122 11 1 3.6294 -1.7584 -3.7120 12 8 2.0062 -0.6736 1.1669 13 6 1.7048 -1.9935 1.2836 14 6 1.0016 -2.6305 0.2748 15 6 0.6955 -3.9719 0.3953 16 6 1.0893 -4.6677 1.5202 17 6 1.7927 -4.0325 2.5357 18 6 2.1053 -2.6976 2.4176 19 6 2.8802 -1.9497 3.4705 20 6 2.8597 -2.7104 4.7947 21 6 3.2877 -4.1583 4.5279 22 6 2.1780 -4.8515 3.7399 23 1 -0.3634 0.6075 0.8288 24 1 -0.3634 0.4141 -0.9406 25 1 -0.3634 -1.0216 0.1117 26 1 3.1283 1.4431 0.0602 27 1 1.7265 1.9387 -0.9185 28 1 1.6282 1.9735 0.8584 29 1 0.7082 1.1606 -3.4844 30 1 0.6938 -2.0806 -0.6023 31 1 0.1454 -4.4741 -0.3868 32 1 0.8482 -5.7164 1.6119 33 1 3.9123 -1.8306 3.1405 34 1 2.4338 -0.9658 3.6144 35 1 1.8522 -2.6962 5.2105 36 1 3.5532 -2.2459 5.4957 37 1 3.4437 -4.6755 5.4747 38 1 4.2104 -4.1674 3.9478 39 1 1.3064 -4.9783 4.3822 40 1 2.5275 -5.8304 3.4120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041251610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:33 Heat of formation + Delta-G solvation = -40.685692 kcal Electronic energy + Delta-G solvation = -20335.588027 eV Core-core repulsion = 17500.313525 eV Total energy + Delta-G solvation = -2835.274503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.43912 -39.36162 -36.51107 -35.71097 -33.01509 -31.93874 -30.93946 -29.30326 -27.62885 -27.34780 -24.46251 -23.66204 -23.00106 -21.45052 -20.01516 -19.01930 -17.38345 -17.30588 -16.41440 -16.25831 -15.87673 -15.50612 -15.16235 -14.68627 -14.46532 -14.38958 -14.06193 -13.58932 -13.47921 -13.24204 -13.15181 -12.98715 -12.83502 -12.55921 -12.46959 -12.38736 -12.24978 -12.11009 -11.84446 -11.68196 -11.42247 -11.25145 -10.92760 -10.75246 -10.46445 -9.30094 -8.65791 -8.16179 -6.30460 0.60913 0.76663 1.36650 1.39707 1.48705 2.35381 2.84998 3.00986 3.07607 3.86366 3.95311 4.11340 4.28515 4.34557 4.42441 4.56498 4.58672 4.65381 4.71776 4.77224 4.81045 4.84342 4.94517 5.00276 5.04938 5.07412 5.19752 5.20042 5.23655 5.30188 5.38834 5.47306 5.50691 5.52491 5.73422 5.81322 5.84784 5.89029 5.98918 6.12909 6.25004 6.56673 7.05985 7.37100 8.82295 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.006795 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.381089 B = 4119.704311 C = 4648.374200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.223 3.777 3 C -0.118 4.118 4 C -0.541 4.541 5 H 0.048 0.952 6 C 0.033 3.967 7 N -0.898 5.898 8 Si 0.949 3.051 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.279 1.279 12 O -0.337 6.337 13 C 0.126 3.874 14 C -0.221 4.221 15 C -0.109 4.109 16 C -0.173 4.173 17 C -0.060 4.060 18 C -0.143 4.143 19 C -0.064 4.064 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.072 4.072 23 H 0.026 0.974 24 H 0.083 0.917 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.088 0.912 28 H 0.034 0.966 29 H 0.268 0.732 30 H 0.148 0.852 31 H 0.129 0.871 32 H 0.143 0.857 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 -9.194 10.822 14.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.187 3.813 3 C -0.176 4.176 4 C -0.579 4.579 5 H 0.067 0.933 6 C -0.168 4.168 7 N -0.536 5.536 8 Si 0.775 3.225 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.204 1.204 12 O -0.252 6.252 13 C 0.080 3.920 14 C -0.239 4.239 15 C -0.128 4.128 16 C -0.191 4.191 17 C -0.060 4.060 18 C -0.144 4.144 19 C -0.101 4.101 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.109 4.109 23 H 0.045 0.955 24 H 0.101 0.899 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.107 0.893 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.165 0.835 31 H 0.147 0.853 32 H 0.161 0.839 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.190 -8.913 10.792 14.047 hybrid contribution 0.045 0.116 -1.657 1.661 sum 1.235 -8.796 9.136 12.742 Atomic orbital electron populations 1.22467 0.97919 1.00269 1.01736 1.19556 0.90998 0.90080 0.80685 1.21645 0.98914 0.95383 1.01649 1.21591 1.32170 1.12532 0.91572 0.93332 1.25378 0.94956 0.95524 1.00901 1.69844 1.36318 1.22939 1.24450 0.85690 0.78694 0.78653 0.79502 1.19858 1.20198 1.20410 1.85881 1.73693 1.19719 1.45929 1.19300 0.94381 0.84117 0.94225 1.22314 1.03546 0.96990 1.01038 1.21147 0.99557 0.93546 0.98506 1.21224 1.02704 1.00740 0.94419 1.19704 0.97173 0.91894 0.97208 1.19263 1.05279 0.94281 0.95531 1.20166 0.98271 0.97876 0.93836 1.21534 1.02149 0.95969 0.95232 1.21553 0.97738 0.95289 1.00732 1.20500 0.99546 0.97764 0.93068 0.95534 0.89890 0.93418 0.94933 0.89326 0.94712 0.92246 0.83499 0.85328 0.83935 0.92373 0.92690 0.91630 0.90063 0.88874 0.92510 0.89386 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -8.17 8.06 71.98 0.58 -7.59 16 2 C 0.22 11.38 0.84 -11.54 -0.01 11.37 16 3 C -0.12 -5.80 8.66 71.98 0.62 -5.17 16 4 C -0.54 -29.15 5.41 25.60 0.14 -29.01 16 5 H 0.05 2.75 6.73 -2.91 -0.02 2.74 16 6 C 0.03 1.74 5.12 84.65 0.43 2.17 16 7 N -0.90 -47.47 9.31 21.45 0.20 -47.27 16 8 Si 0.95 42.50 29.54 68.60 2.03 44.52 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 O -0.34 -16.76 8.81 -92.38 -0.81 -17.58 16 13 C 0.13 5.74 5.97 22.60 0.13 5.87 16 14 C -0.22 -9.93 6.26 22.30 0.14 -9.80 16 15 C -0.11 -4.08 10.04 22.19 0.22 -3.86 16 16 C -0.17 -5.50 9.60 22.37 0.21 -5.28 16 17 C -0.06 -1.91 5.74 -19.87 -0.11 -2.02 16 18 C -0.14 -5.45 5.75 -19.77 -0.11 -5.57 16 19 C -0.06 -2.12 5.28 29.73 0.16 -1.97 16 20 C -0.11 -2.62 5.98 30.61 0.18 -2.43 16 21 C -0.12 -2.35 5.98 30.61 0.18 -2.17 16 22 C -0.07 -1.59 5.67 29.74 0.17 -1.42 16 23 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.08 4.32 5.93 -2.39 -0.01 4.30 16 25 H 0.05 2.29 5.01 -2.39 -0.01 2.28 16 26 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 4.57 5.99 -2.39 -0.01 4.56 16 28 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 30 H 0.15 7.38 3.75 -2.91 -0.01 7.37 16 31 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.14 3.47 8.05 -2.91 -0.02 3.45 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.96 7.75 -2.39 -0.02 1.94 16 35 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 39 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.09 1.65 8.12 -2.39 -0.02 1.63 16 Total: -1.00 -58.50 304.21 5.37 -53.13 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 1.02 Total: 24.07 kcal Atomic # 6 Polarization: -59.82 SS G_CDS: 2.94 Total: -56.88 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.20 Total: -47.27 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.81 Total: -17.58 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -58.50 5.37 -53.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041251610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.444 kcal (2) G-P(sol) polarization free energy of solvation -58.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds