Wall clock time and date at job start Mon Mar 30 2020 06:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38931 * 120.03923 * 2 1 4 4 N 1.39668 * 120.07340 * 359.95437 * 3 2 1 5 5 C 1.38894 * 119.85097 * 179.97438 * 3 2 1 6 6 C 1.38122 * 119.92662 * 0.02562 * 5 3 2 7 7 C 1.38261 * 120.07328 * 0.27337 * 6 5 3 8 8 C 1.38088 * 120.03730 * 179.97438 * 2 1 3 9 9 C 1.50692 * 119.96183 * 0.02562 * 8 2 1 10 10 N 1.46900 * 109.47160 * 286.75608 * 9 8 2 11 11 C 1.46900 * 110.99978 * 162.82520 * 10 9 8 12 12 C 1.50708 * 109.47248 * 196.00906 * 11 10 9 13 13 H 1.08007 * 119.99406 * 2.02455 * 12 11 10 14 14 C 1.37868 * 120.00121 * 182.02376 * 12 11 10 15 15 N 1.31515 * 120.00510 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00005 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47150 * 89.99723 * 16 14 12 18 18 H 1.48500 * 109.47213 * 210.00337 * 16 14 12 19 19 H 1.48499 * 109.46973 * 330.00173 * 16 14 12 20 20 C 1.46901 * 111.00140 * 286.77719 * 10 9 8 21 21 C 1.52995 * 117.49957 * 141.34894 * 20 10 9 22 22 C 1.53001 * 60.00142 * 252.51194 * 21 20 10 23 23 H 1.09007 * 109.47100 * 84.72638 * 1 2 3 24 24 H 1.08996 * 109.47334 * 204.72807 * 1 2 3 25 25 H 1.09002 * 109.47168 * 324.73308 * 1 2 3 26 26 H 0.97004 * 120.00317 * 180.02562 * 4 3 2 27 27 H 0.96994 * 120.00403 * 0.02562 * 4 3 2 28 28 H 1.08003 * 120.03824 * 179.97438 * 5 3 2 29 29 H 1.08005 * 119.96579 * 179.97438 * 6 5 3 30 30 H 1.08001 * 119.92876 * 179.70592 * 7 6 5 31 31 H 1.09001 * 109.47511 * 46.75524 * 9 8 2 32 32 H 1.09000 * 109.47164 * 166.75582 * 9 8 2 33 33 H 1.08997 * 109.47257 * 316.00987 * 11 10 9 34 34 H 1.08997 * 109.47564 * 76.00611 * 11 10 9 35 35 H 0.96996 * 120.00556 * 180.02562 * 15 14 12 36 36 H 1.09001 * 115.54866 * 287.05991 * 20 10 9 37 37 H 1.09011 * 117.49825 * 0.02562 * 21 20 10 38 38 H 1.08994 * 117.50197 * 145.02145 * 21 20 10 39 39 H 1.08993 * 117.49877 * 252.50660 * 22 21 20 40 40 H 1.09000 * 117.51353 * 107.48147 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2024 1.2027 0.0000 4 7 1.5064 2.4136 -0.0010 5 6 3.5913 1.1981 0.0005 6 6 4.2765 -0.0012 0.0005 7 6 3.5812 -1.1963 -0.0057 8 6 2.1981 -1.1954 0.0005 9 6 1.4447 -2.5004 0.0005 10 7 0.8535 -2.7246 1.3265 11 6 -0.2026 -3.7439 1.2666 12 6 -1.0411 -3.6727 2.5169 13 1 -0.8326 -2.9218 3.2647 14 6 -2.0741 -4.5659 2.7060 15 7 -2.3282 -5.4799 1.7951 16 14 -3.1130 -4.4780 4.2560 17 1 -4.2677 -3.5728 4.0273 18 1 -3.6082 -5.8357 4.5977 19 1 -2.2887 -3.9556 5.3753 20 6 1.8840 -3.0912 2.3072 21 6 1.7493 -2.5204 3.7203 22 6 2.8331 -1.9884 2.7804 23 1 -0.3634 0.0945 -1.0234 24 1 -0.3634 -0.9334 0.4299 25 1 -0.3633 0.8391 0.5934 26 1 1.9931 3.2528 -0.0013 27 1 0.5365 2.4156 -0.0013 28 1 4.1350 2.1313 0.0001 29 1 5.3565 -0.0055 0.0005 30 1 4.1194 -2.1327 -0.0105 31 1 0.6535 -2.4633 -0.7484 32 1 2.1294 -3.3153 -0.2345 33 1 -0.8327 -3.5635 0.3958 34 1 0.2503 -4.7323 1.1888 35 1 -3.0552 -6.1081 1.9279 36 1 2.2915 -4.0972 2.2071 37 1 0.8958 -1.8731 3.9225 38 1 2.0681 -3.1509 4.5503 39 1 3.8648 -2.2689 2.9921 40 1 2.6930 -0.9909 2.3639 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:08 Heat of formation + Delta-G solvation = 37.603850 kcal Electronic energy + Delta-G solvation = -19917.456644 eV Core-core repulsion = 17117.869781 eV Total energy + Delta-G solvation = -2799.586862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80024 -38.87502 -35.64508 -35.38286 -34.47831 -32.96917 -30.45964 -28.72892 -27.46362 -25.92917 -24.10833 -23.03394 -22.12686 -21.90215 -20.90919 -18.55271 -17.87752 -17.36147 -16.74198 -16.34974 -16.25154 -15.91177 -15.52285 -14.94872 -14.60174 -14.54630 -14.14629 -13.75814 -13.65471 -13.16011 -13.01746 -12.94516 -12.86781 -12.71463 -12.51919 -12.26105 -12.07050 -11.91860 -11.57504 -11.37396 -11.22137 -10.95099 -10.67433 -10.53879 -9.31700 -8.96913 -8.19720 -8.14107 -6.22211 0.65167 0.88476 1.41766 1.42465 1.53695 2.43057 2.99097 3.13274 3.16817 3.19217 3.38372 4.00983 4.15187 4.21245 4.30629 4.31756 4.43318 4.49516 4.62203 4.71892 4.80918 4.88914 4.91232 4.92317 4.98081 5.05573 5.12678 5.19880 5.24875 5.36807 5.47708 5.58273 5.61516 5.74116 5.82756 6.01221 6.10388 6.20054 6.46448 6.67549 6.75150 6.94284 7.12878 7.46506 8.96469 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025563 B = 0.005771 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.065101 B = 4850.314796 C = 5133.858795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.156 4.156 3 C 0.206 3.794 4 N -0.871 5.871 5 C -0.205 4.205 6 C -0.078 4.078 7 C -0.173 4.173 8 C -0.029 4.029 9 C 0.094 3.906 10 N -0.497 5.497 11 C 0.211 3.789 12 C -0.503 4.503 13 H 0.065 0.935 14 C 0.000 4.000 15 N -0.939 5.939 16 Si 0.962 3.038 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.010 3.990 21 C -0.162 4.162 22 C -0.139 4.139 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.406 0.594 27 H 0.400 0.600 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.115 0.885 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.003 0.997 34 H -0.040 1.040 35 H 0.261 0.739 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.955 14.220 -2.672 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.161 4.161 3 C 0.101 3.899 4 N -0.413 5.413 5 C -0.228 4.228 6 C -0.097 4.097 7 C -0.193 4.193 8 C -0.030 4.030 9 C -0.033 4.033 10 N -0.221 5.221 11 C 0.086 3.914 12 C -0.541 4.541 13 H 0.084 0.916 14 C -0.197 4.197 15 N -0.580 5.580 16 Si 0.788 3.212 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.099 4.099 21 C -0.199 4.199 22 C -0.176 4.176 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.236 0.764 27 H 0.230 0.770 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.133 0.867 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.021 0.979 34 H -0.022 1.022 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.625 14.482 -2.561 18.747 hybrid contribution -0.865 -1.138 0.224 1.447 sum 10.760 13.344 -2.336 17.300 Atomic orbital electron populations 1.20609 0.91901 1.03094 1.00896 1.19236 0.95759 0.91618 1.09493 1.17697 0.91727 0.86249 0.94220 1.42448 1.09282 1.04585 1.84938 1.20758 0.91613 0.99314 1.11113 1.21002 1.00264 0.91239 0.97187 1.20812 0.92727 0.98614 1.07166 1.19347 0.93639 0.92994 0.97008 1.20951 0.96770 0.94118 0.91474 1.61833 1.09878 1.45334 1.05042 1.19393 0.88711 0.86940 0.96403 1.21441 1.13424 1.14642 1.04639 0.91648 1.25836 0.98918 0.95064 0.99870 1.70087 1.31708 1.19752 1.36466 0.85483 0.78858 0.77162 0.79730 1.20033 1.21102 1.18947 1.22081 0.97321 0.95216 0.95325 1.22840 1.00756 1.03576 0.92759 1.23028 0.94766 0.98082 1.01750 0.92196 0.91822 0.91931 0.76447 0.77036 0.84399 0.84055 0.86705 0.91839 0.95172 0.97913 1.02180 0.92976 0.92259 0.90357 0.88692 0.87494 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.44 8.89 71.23 0.63 -2.80 16 2 C -0.16 -4.80 5.85 -19.74 -0.12 -4.91 16 3 C 0.21 5.19 6.73 38.22 0.26 5.45 16 4 N -0.87 -16.35 8.99 -51.37 -0.46 -16.81 16 5 C -0.21 -4.56 9.90 22.40 0.22 -4.33 16 6 C -0.08 -1.78 10.04 22.25 0.22 -1.55 16 7 C -0.17 -4.75 7.78 22.29 0.17 -4.57 16 8 C -0.03 -0.93 3.45 -19.88 -0.07 -0.99 16 9 C 0.09 3.60 4.24 85.55 0.36 3.96 16 10 N -0.50 -21.72 3.39 -880.07 -2.98 -24.71 16 11 C 0.21 11.39 4.74 85.56 0.41 11.80 16 12 C -0.50 -28.55 8.72 25.60 0.22 -28.32 16 13 H 0.07 3.66 6.35 -2.91 -0.02 3.64 16 14 C 0.00 0.01 5.46 84.65 0.46 0.47 16 15 N -0.94 -57.19 13.29 21.44 0.28 -56.91 16 16 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C 0.01 0.39 4.53 44.91 0.20 0.59 16 21 C -0.16 -6.00 9.58 30.59 0.29 -5.71 16 22 C -0.14 -4.47 8.41 30.59 0.26 -4.21 16 23 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 24 H 0.06 2.51 5.82 -2.39 -0.01 2.50 16 25 H 0.06 1.76 6.83 -2.39 -0.02 1.74 16 26 H 0.41 5.39 8.84 -92.70 -0.82 4.57 16 27 H 0.40 7.18 6.95 -92.71 -0.64 6.53 16 28 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 29 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.11 3.01 7.98 -2.91 -0.02 2.99 16 31 H 0.06 2.52 7.14 -2.39 -0.02 2.51 16 32 H 0.03 1.13 7.82 -2.39 -0.02 1.11 16 33 H 0.00 0.16 7.71 -2.39 -0.02 0.14 16 34 H -0.04 -2.34 8.05 -2.39 -0.02 -2.36 16 35 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.08 3.19 7.38 -2.38 -0.02 3.18 16 38 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.09 3.15 6.24 -2.39 -0.01 3.13 16 Total: -1.00 -65.10 318.96 1.98 -63.12 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.42 Total: 23.43 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 3.53 Total: -35.13 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -3.16 Total: -98.43 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -65.10 1.98 -63.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.723 kcal (2) G-P(sol) polarization free energy of solvation -65.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds