Wall clock time and date at job start Mon Mar 30 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86810 * 119.99623 * 2 1 4 4 H 1.48495 * 109.47128 * 269.99382 * 3 2 1 5 5 H 1.48497 * 109.46994 * 29.99596 * 3 2 1 6 6 H 1.48504 * 109.46672 * 149.99572 * 3 2 1 7 7 C 1.37874 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99625 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99924 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46926 * 184.85162 * 9 7 2 11 11 C 1.46902 * 111.00114 * 285.58157 * 10 9 7 12 12 C 1.52996 * 109.47251 * 169.99878 * 11 10 9 13 13 C 1.50698 * 109.47331 * 180.02562 * 12 11 10 14 14 C 1.38282 * 119.92704 * 89.99779 * 13 12 11 15 15 C 1.38104 * 120.07497 * 179.97438 * 14 13 12 16 16 C 1.38906 * 119.92383 * 0.02562 * 15 14 13 17 17 N 1.39680 * 120.07234 * 179.97438 * 16 15 14 18 18 C 1.38906 * 119.85326 * 0.25174 * 16 15 14 19 19 C 1.38099 * 119.92402 * 359.49288 * 18 16 15 20 20 C 1.46900 * 110.99818 * 161.62954 * 10 9 7 21 21 C 1.53005 * 117.50059 * 10.45949 * 20 10 9 22 22 C 1.52998 * 117.50202 * 301.80063 * 20 10 9 23 23 H 0.97006 * 119.99977 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47338 * 64.85445 * 9 7 2 25 25 H 1.08999 * 109.47290 * 304.84816 * 9 7 2 26 26 H 1.09008 * 109.46748 * 50.00061 * 11 10 9 27 27 H 1.08998 * 109.47270 * 290.00629 * 11 10 9 28 28 H 1.09008 * 109.47095 * 60.00395 * 12 11 10 29 29 H 1.08998 * 109.47596 * 300.00551 * 12 11 10 30 30 H 1.07995 * 119.96100 * 359.96419 * 14 13 12 31 31 H 1.08000 * 120.03431 * 179.97438 * 15 14 13 32 32 H 0.96998 * 120.00140 * 359.97438 * 17 16 15 33 33 H 0.97000 * 119.99781 * 179.72649 * 17 16 15 34 34 H 1.08000 * 120.03769 * 179.72309 * 18 16 15 35 35 H 1.08008 * 119.96613 * 180.24624 * 19 18 16 36 36 H 1.09004 * 115.54950 * 156.12651 * 20 10 9 37 37 H 1.08999 * 117.49662 * 0.02562 * 21 20 10 38 38 H 1.09000 * 117.49516 * 145.02191 * 21 20 10 39 39 H 1.09001 * 117.50004 * 214.98688 * 22 20 10 40 40 H 1.09005 * 117.49537 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2014 -3.6131 0.1183 11 6 2.9189 -3.8289 -1.1453 12 6 4.0642 -4.8178 -0.9191 13 6 4.8006 -5.0387 -2.2152 14 6 5.8719 -4.2295 -2.5466 15 6 6.5492 -4.4296 -3.7333 16 6 6.1529 -5.4446 -4.5948 17 7 6.8355 -5.6494 -5.7961 18 6 5.0728 -6.2519 -4.2616 19 6 4.4032 -6.0498 -3.0708 20 6 1.5222 -4.8405 0.5543 21 6 -0.0077 -4.8353 0.5662 22 6 0.7685 -4.7964 1.8849 23 1 -0.4850 0.8401 -0.0004 24 1 0.6916 -2.5956 -0.9299 25 1 0.5606 -2.5200 0.8436 26 1 3.3224 -2.8806 -1.5005 27 1 2.2318 -4.2325 -1.8889 28 1 3.6606 -5.7661 -0.5639 29 1 4.7513 -4.4141 -0.1755 30 1 6.1790 -3.4401 -1.8766 31 1 7.3856 -3.7969 -3.9917 32 1 7.5869 -5.0822 -6.0298 33 1 6.5603 -6.3611 -6.3950 34 1 4.7594 -7.0392 -4.9312 35 1 3.5657 -6.6797 -2.8092 36 1 2.0202 -5.7731 0.2886 37 1 -0.5103 -3.9211 0.2501 38 1 -0.5162 -5.7644 0.3089 39 1 0.7703 -5.6999 2.4947 40 1 0.7769 -3.8566 2.4371 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042531006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:17 Heat of formation + Delta-G solvation = 50.187623 kcal Electronic energy + Delta-G solvation = -18936.972718 eV Core-core repulsion = 16137.931529 eV Total energy + Delta-G solvation = -2799.041189 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.35401 -38.04940 -35.22154 -33.52156 -32.50153 -30.72811 -30.50068 -27.44904 -25.70336 -22.73740 -22.69026 -22.49379 -21.62574 -20.58676 -18.68704 -17.03941 -16.85374 -16.63661 -15.50286 -15.10866 -14.73764 -14.43367 -13.99850 -13.59200 -13.41575 -13.23687 -12.91048 -12.74693 -12.32792 -11.94858 -11.71164 -11.21133 -10.92311 -10.91546 -10.80642 -10.68798 -10.66462 -10.37608 -10.14260 -9.95722 -9.74152 -9.49397 -9.06910 -8.76778 -8.37970 -7.35854 -7.03596 -5.98373 -3.99071 1.59656 1.75743 3.34729 3.40732 3.45325 3.83679 4.02525 4.42644 4.51488 4.93908 5.00059 5.12201 5.35558 5.37693 5.48419 5.58793 5.62763 5.66259 5.76126 5.84801 5.90257 6.01582 6.21331 6.23687 6.27906 6.30688 6.40245 6.56740 6.63378 6.70098 6.82139 6.84969 7.01988 7.05038 7.33950 7.38017 7.50792 7.69333 7.86407 8.16682 8.27551 8.60022 9.08336 9.64632 11.12273 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.005310 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.980464 B = 5271.697067 C = 6630.467148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.189 3.811 10 N -0.505 5.505 11 C 0.073 3.927 12 C -0.072 4.072 13 C -0.125 4.125 14 C -0.065 4.065 15 C -0.196 4.196 16 C 0.201 3.799 17 N -0.884 5.884 18 C -0.198 4.198 19 C -0.070 4.070 20 C 0.025 3.975 21 C -0.227 4.227 22 C -0.176 4.176 23 H 0.260 0.740 24 H -0.009 1.009 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.021 0.979 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.395 0.605 33 H 0.394 0.606 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.032 -12.723 -7.285 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.064 3.936 10 N -0.227 5.227 11 C -0.055 4.055 12 C -0.109 4.109 13 C -0.127 4.127 14 C -0.084 4.084 15 C -0.218 4.218 16 C 0.098 3.902 17 N -0.424 5.424 18 C -0.220 4.220 19 C -0.089 4.089 20 C -0.085 4.085 21 C -0.266 4.266 22 C -0.214 4.214 23 H 0.070 0.930 24 H 0.009 0.991 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.222 0.778 33 H 0.222 0.778 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.210 -12.432 -6.882 17.498 hybrid contribution -0.125 0.683 -1.001 1.219 sum 10.085 -11.749 -7.883 17.375 Atomic orbital electron populations 1.69956 1.06024 1.26680 1.51297 1.24969 0.94842 0.99214 0.95563 0.86527 0.79859 0.83228 0.77992 1.20800 1.21315 1.19764 1.21178 0.93540 0.89928 1.49596 0.91934 1.19847 0.90536 0.87133 0.96054 1.62010 1.28753 1.02998 1.28916 1.21940 0.94010 0.99056 0.90513 1.20589 0.97312 0.99561 0.93476 1.19764 0.97731 0.97292 0.97912 1.20873 0.94239 0.97700 0.95604 1.20547 1.03942 1.00855 0.96488 1.17753 0.91794 0.94071 0.86545 1.42413 1.38126 1.40503 1.21375 1.20498 0.98943 1.03094 0.99514 1.20789 0.98141 0.96916 0.93070 1.22673 0.90428 0.95027 1.00394 1.23578 0.97114 1.03034 1.02899 1.22982 1.04828 1.02588 0.90979 0.93000 0.99148 0.94254 0.89981 0.96047 0.91973 0.90674 0.85884 0.86629 0.77751 0.77815 0.86768 0.86421 0.87739 0.87589 0.90251 0.89738 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.50 -14.26 8.58 -34.44 -0.30 -14.56 16 8 H 0.06 1.76 7.58 -52.48 -0.40 1.36 16 9 C 0.19 4.93 3.38 -4.98 -0.02 4.92 16 10 N -0.50 -10.98 4.65 -228.08 -1.06 -12.04 16 11 C 0.07 1.42 4.77 -3.82 -0.02 1.40 16 12 C -0.07 -1.13 5.33 -27.89 -0.15 -1.28 16 13 C -0.12 -1.83 5.14 -104.59 -0.54 -2.36 16 14 C -0.07 -0.92 9.69 -39.61 -0.38 -1.31 16 15 C -0.20 -2.48 9.90 -39.38 -0.39 -2.87 16 16 C 0.20 2.40 6.75 -83.79 -0.57 1.83 16 17 N -0.88 -7.48 9.09 32.41 0.29 -7.19 16 18 C -0.20 -2.43 9.90 -39.39 -0.39 -2.82 16 19 C -0.07 -0.95 9.69 -39.61 -0.38 -1.33 16 20 C 0.03 0.46 5.83 -67.71 -0.39 0.07 16 21 C -0.23 -4.16 9.56 -26.69 -0.26 -4.42 16 22 C -0.18 -3.12 9.92 -26.70 -0.26 -3.39 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H -0.01 -0.26 7.82 -51.93 -0.41 -0.67 16 25 H 0.04 1.09 5.63 -51.93 -0.29 0.80 16 26 H 0.08 1.77 7.21 -51.92 -0.37 1.40 16 27 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.06 0.91 6.35 -51.92 -0.33 0.58 16 29 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 30 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.39 2.67 8.84 -40.82 -0.36 2.31 16 33 H 0.39 2.60 8.84 -40.82 -0.36 2.24 16 34 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.10 1.69 6.34 -51.93 -0.33 1.36 16 37 H 0.11 2.26 6.02 -51.93 -0.31 1.95 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 1.95 7.48 -51.93 -0.39 1.56 16 LS Contribution 326.91 15.07 4.93 4.93 Total: -1.00 -30.82 326.91 -10.33 -41.15 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.07 Total: 7.08 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -4.14 Total: -24.63 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.03 Total: -45.37 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.82 -10.33 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.339 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds