Wall clock time and date at job start Mon Mar 30 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86810 * 119.99623 * 2 1 4 4 H 1.48495 * 109.47128 * 269.99382 * 3 2 1 5 5 H 1.48497 * 109.46994 * 29.99596 * 3 2 1 6 6 H 1.48504 * 109.46672 * 149.99572 * 3 2 1 7 7 C 1.37874 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99625 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99924 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46926 * 184.85162 * 9 7 2 11 11 C 1.46902 * 111.00114 * 285.58157 * 10 9 7 12 12 C 1.52996 * 109.47251 * 169.99878 * 11 10 9 13 13 C 1.50698 * 109.47331 * 180.02562 * 12 11 10 14 14 C 1.38282 * 119.92704 * 89.99779 * 13 12 11 15 15 C 1.38104 * 120.07497 * 179.97438 * 14 13 12 16 16 C 1.38906 * 119.92383 * 0.02562 * 15 14 13 17 17 N 1.39680 * 120.07234 * 179.97438 * 16 15 14 18 18 C 1.38906 * 119.85326 * 0.25174 * 16 15 14 19 19 C 1.38099 * 119.92402 * 359.49288 * 18 16 15 20 20 C 1.46900 * 110.99818 * 161.62954 * 10 9 7 21 21 C 1.53005 * 117.50059 * 10.45949 * 20 10 9 22 22 C 1.52998 * 117.50202 * 301.80063 * 20 10 9 23 23 H 0.97006 * 119.99977 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47338 * 64.85445 * 9 7 2 25 25 H 1.08999 * 109.47290 * 304.84816 * 9 7 2 26 26 H 1.09008 * 109.46748 * 50.00061 * 11 10 9 27 27 H 1.08998 * 109.47270 * 290.00629 * 11 10 9 28 28 H 1.09008 * 109.47095 * 60.00395 * 12 11 10 29 29 H 1.08998 * 109.47596 * 300.00551 * 12 11 10 30 30 H 1.07995 * 119.96100 * 359.96419 * 14 13 12 31 31 H 1.08000 * 120.03431 * 179.97438 * 15 14 13 32 32 H 0.96998 * 120.00140 * 359.97438 * 17 16 15 33 33 H 0.97000 * 119.99781 * 179.72649 * 17 16 15 34 34 H 1.08000 * 120.03769 * 179.72309 * 18 16 15 35 35 H 1.08008 * 119.96613 * 180.24624 * 19 18 16 36 36 H 1.09004 * 115.54950 * 156.12651 * 20 10 9 37 37 H 1.08999 * 117.49662 * 0.02562 * 21 20 10 38 38 H 1.09000 * 117.49516 * 145.02191 * 21 20 10 39 39 H 1.09001 * 117.50004 * 214.98688 * 22 20 10 40 40 H 1.09005 * 117.49537 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2014 -3.6131 0.1183 11 6 2.9189 -3.8289 -1.1453 12 6 4.0642 -4.8178 -0.9191 13 6 4.8006 -5.0387 -2.2152 14 6 5.8719 -4.2295 -2.5466 15 6 6.5492 -4.4296 -3.7333 16 6 6.1529 -5.4446 -4.5948 17 7 6.8355 -5.6494 -5.7961 18 6 5.0728 -6.2519 -4.2616 19 6 4.4032 -6.0498 -3.0708 20 6 1.5222 -4.8405 0.5543 21 6 -0.0077 -4.8353 0.5662 22 6 0.7685 -4.7964 1.8849 23 1 -0.4850 0.8401 -0.0004 24 1 0.6916 -2.5956 -0.9299 25 1 0.5606 -2.5200 0.8436 26 1 3.3224 -2.8806 -1.5005 27 1 2.2318 -4.2325 -1.8889 28 1 3.6606 -5.7661 -0.5639 29 1 4.7513 -4.4141 -0.1755 30 1 6.1790 -3.4401 -1.8766 31 1 7.3856 -3.7969 -3.9917 32 1 7.5869 -5.0822 -6.0298 33 1 6.5603 -6.3611 -6.3950 34 1 4.7594 -7.0392 -4.9312 35 1 3.5657 -6.6797 -2.8092 36 1 2.0202 -5.7731 0.2886 37 1 -0.5103 -3.9211 0.2501 38 1 -0.5162 -5.7644 0.3089 39 1 0.7703 -5.6999 2.4947 40 1 0.7769 -3.8566 2.4371 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:16 Heat of formation + Delta-G solvation = 30.835136 kcal Electronic energy + Delta-G solvation = -18937.811905 eV Core-core repulsion = 16137.931529 eV Total energy + Delta-G solvation = -2799.880376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.40623 -39.59102 -36.28957 -35.26348 -34.26670 -31.91690 -31.69945 -29.13492 -27.25484 -24.59743 -23.94143 -23.64948 -23.11450 -21.72269 -20.33458 -18.70718 -17.93390 -17.66264 -17.08467 -16.75996 -16.27468 -15.94841 -15.24138 -14.88666 -14.71154 -14.29065 -14.24639 -14.04863 -13.95374 -13.60557 -13.38141 -12.96063 -12.66407 -12.49094 -12.30753 -12.18295 -12.07408 -11.82100 -11.74448 -11.42202 -11.21490 -11.06378 -10.97855 -10.58697 -9.75807 -8.80028 -8.25993 -8.18997 -6.28997 0.61085 0.74412 1.39666 1.41179 1.52934 2.40198 2.91125 3.03829 3.10507 3.12610 3.41501 3.99282 4.04112 4.12964 4.18413 4.24537 4.28564 4.35839 4.54662 4.64684 4.73849 4.80887 4.81469 4.84503 5.02576 5.09718 5.15233 5.18650 5.27619 5.34067 5.35678 5.38064 5.48755 5.61435 5.66785 5.96352 6.07241 6.10422 6.41632 6.67238 6.69305 6.86940 7.07456 7.40152 8.91323 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.005310 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.980464 B = 5271.697067 C = 6630.467148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.210 3.790 10 N -0.515 5.515 11 C 0.080 3.920 12 C -0.054 4.054 13 C -0.149 4.149 14 C -0.080 4.080 15 C -0.207 4.207 16 C 0.204 3.796 17 N -0.871 5.871 18 C -0.205 4.205 19 C -0.076 4.076 20 C 0.015 3.985 21 C -0.227 4.227 22 C -0.166 4.166 23 H 0.264 0.736 24 H -0.043 1.043 25 H 0.016 0.984 26 H 0.052 0.948 27 H 0.015 0.985 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.405 0.595 33 H 0.406 0.594 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.140 0.860 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.565 -14.126 -8.080 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.084 3.916 10 N -0.237 5.237 11 C -0.048 4.048 12 C -0.091 4.091 13 C -0.152 4.152 14 C -0.099 4.099 15 C -0.230 4.230 16 C 0.099 3.901 17 N -0.411 5.411 18 C -0.228 4.228 19 C -0.094 4.094 20 C -0.094 4.094 21 C -0.266 4.266 22 C -0.204 4.204 23 H 0.072 0.928 24 H -0.025 1.025 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.234 0.766 33 H 0.235 0.765 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.143 0.857 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.771 -13.860 -7.705 19.749 hybrid contribution -0.594 1.067 -0.834 1.479 sum 11.177 -12.793 -8.539 19.013 Atomic orbital electron populations 1.70086 1.07654 1.27784 1.51973 1.25880 0.95730 1.03053 0.94887 0.85425 0.78660 0.78429 0.78383 1.19907 1.20606 1.18904 1.21499 0.93552 0.91327 1.49732 0.92278 1.19415 0.90407 0.88572 0.93220 1.61926 1.28035 1.03606 1.30117 1.21883 0.94829 0.98742 0.89327 1.20370 0.95608 0.98789 0.94348 1.19696 0.98631 0.98821 0.98005 1.20984 0.94683 0.97786 0.96422 1.20745 1.04455 1.01567 0.96196 1.17900 0.91628 0.93361 0.87255 1.42397 1.37774 1.40697 1.20231 1.20777 0.98859 1.03691 0.99472 1.20977 0.98518 0.96623 0.93302 1.22932 0.90685 0.94710 1.01105 1.23493 0.96813 1.02745 1.03555 1.23026 1.03706 1.02935 0.90722 0.92755 1.02517 0.96641 0.92963 0.96639 0.90333 0.91359 0.86295 0.84998 0.76580 0.76469 0.84503 0.85260 0.84302 0.91626 0.86843 0.85668 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 2 C 0.00 0.13 5.46 84.65 0.46 0.60 16 3 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.52 -30.72 8.58 25.60 0.22 -30.50 16 8 H 0.06 3.43 7.58 -2.91 -0.02 3.41 16 9 C 0.21 11.54 3.38 85.55 0.29 11.83 16 10 N -0.52 -23.01 4.65 -875.51 -4.07 -27.08 16 11 C 0.08 3.21 4.77 86.30 0.41 3.62 16 12 C -0.05 -1.67 5.33 29.85 0.16 -1.51 16 13 C -0.15 -4.29 5.14 -19.84 -0.10 -4.39 16 14 C -0.08 -2.24 9.69 22.25 0.22 -2.02 16 15 C -0.21 -4.96 9.90 22.40 0.22 -4.74 16 16 C 0.20 4.40 6.75 38.21 0.26 4.66 16 17 N -0.87 -12.22 9.09 -51.37 -0.47 -12.69 16 18 C -0.21 -4.56 9.90 22.40 0.22 -4.34 16 19 C -0.08 -1.91 9.69 22.25 0.22 -1.70 16 20 C 0.02 0.55 5.83 44.92 0.26 0.81 16 21 C -0.23 -8.29 9.56 30.62 0.29 -8.00 16 22 C -0.17 -5.76 9.92 30.62 0.30 -5.46 16 23 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 24 H -0.04 -2.58 7.82 -2.39 -0.02 -2.60 16 25 H 0.02 0.92 5.63 -2.39 -0.01 0.90 16 26 H 0.05 2.37 7.21 -2.38 -0.02 2.35 16 27 H 0.02 0.62 8.12 -2.39 -0.02 0.61 16 28 H 0.08 2.15 6.35 -2.38 -0.02 2.14 16 29 H 0.07 2.20 8.08 -2.39 -0.02 2.18 16 30 H 0.12 3.28 8.06 -2.91 -0.02 3.25 16 31 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.40 4.30 8.84 -92.71 -0.82 3.48 16 33 H 0.41 4.06 8.84 -92.71 -0.82 3.24 16 34 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 36 H 0.14 4.11 6.34 -2.39 -0.02 4.10 16 37 H 0.07 2.95 6.02 -2.39 -0.01 2.94 16 38 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.07 2.76 7.48 -2.38 -0.02 2.75 16 Total: -1.00 -68.86 326.91 0.61 -68.25 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.59 Total: 22.38 kcal Atomic # 6 Polarization: -44.56 SS G_CDS: 3.43 Total: -41.13 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -4.25 Total: -97.06 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -68.86 0.61 -68.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.085 kcal (2) G-P(sol) polarization free energy of solvation -68.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds